HHsearch alignment for GI: 254780648 and conserved domain: cd04156

>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79  E-value=2.7e-19  Score=136.83  Aligned_cols=148  Identities=20%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             12442167775303541014540121211000000102----66329-86899822642124731167751234433333
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTER  236 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer  236 (335)
T Consensus         2 ivilG~~~~GKTsil~r~~~~~~-------~~~~pTig~~~~~~~~~~~~~l~iwD~~G~----e~~~~~~~~---y~~~   67 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHAEL-------VTTIPTVGFNVEMLQLEKHLSLTVWDVGGQ----EKMRTVWKC---YLEN   67 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCEEEEEEEECCEEEEEEEECCCC----CCCCHHHHH---HHCC
T ss_conf             99999999999999999956987-------775776150389999899899999978986----247415887---7456


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-----HHHHHHHCCCCEEEEECCC
Q ss_conf             57887520222211013466678998777667505988999974658998899999-----9999986299489998887
Q gi|254780648|r  237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-----KNELATQCGQVPFEFSSIT  311 (335)
Q Consensus       237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-----~~~l~~~~~~~vi~ISA~t  311 (335)
T Consensus        68 a~~iI~V~D~td~~~~~~~~~~~~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAkt  146 (160)
T cd04156          68 TDGLVYVVDSSDEARLDESQKELKHILK-NEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVT  146 (160)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             7789999856867887879999999986-635378749999986336566799999999869999853999999866884


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             8899999999999
Q gi|254780648|r  312 GHGIPQILECLHD  324 (335)
Q Consensus       312 g~GI~eL~~~I~e  324 (335)
T Consensus       147 Gegi~e~f~~la~  159 (160)
T cd04156         147 GEGLAEAFRKLAS  159 (160)
T ss_pred             CCCHHHHHHHHHC
T ss_conf             9599999999857