HHsearch alignment for GI: 254780648 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=2.7e-19 Score=136.83 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=101.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEEC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329-86899822642124731167751234433333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEG-YKEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~-~~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
T Consensus 2 ivilG~~~~GKTsil~r~~~~~~-------~~~~pTig~~~~~~~~~~~~~l~iwD~~G~----e~~~~~~~~---y~~~ 67 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAEL-------VTTIPTVGFNVEMLQLEKHLSLTVWDVGGQ----EKMRTVWKC---YLEN 67 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCEEEEEEEECCEEEEEEEECCCC----CCCCHHHHH---HHCC
T ss_conf 99999999999999999956987-------775776150389999899899999978986----247415887---7456
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-----HHHHHHHCCCCEEEEECCC
Q ss_conf 57887520222211013466678998777667505988999974658998899999-----9999986299489998887
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK-----KNELATQCGQVPFEFSSIT 311 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~-----~~~l~~~~~~~vi~ISA~t 311 (335)
T Consensus 68 a~~iI~V~D~td~~~~~~~~~~~~~~l~-~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAkt 146 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILK-NEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVT 146 (160)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 7789999856867887879999999986-635378749999986336566799999999869999853999999866884
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8899999999999
Q gi|254780648|r 312 GHGIPQILECLHD 324 (335)
Q Consensus 312 g~GI~eL~~~I~e 324 (335)
T Consensus 147 Gegi~e~f~~la~ 159 (160)
T cd04156 147 GEGLAEAFRKLAS 159 (160)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9599999999857