HHsearch alignment for GI: 254780648 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=4.9e-19 Score=135.23 Aligned_cols=148 Identities=23% Similarity=0.223 Sum_probs=102.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE----EEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102----66329868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG----IVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG----vv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 2 ililGLd~aGKTTil~~l~~~~~-------~~~~PT~G~~~~~~~~~~~~l~~~DlgG~----~~~R~lW---~~Y~~~~ 67 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP-------KKVAPTVGFTPTKLRLDKYEVCIFDLGGG----ANFRGIW---VNYYAEA 67 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCC-------CCCCCCCCCCEEEEEECCEEEEEEECCCC----HHHHHHH---HHHCCCC
T ss_conf 89990089988999999828998-------76508777317999989999999989987----7888999---9873477
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH--HH-----CCCCEEEEECC
Q ss_conf 788752022221101346667899877766750598899997465899889999999999--86-----29948999888
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA--TQ-----CGQVPFEFSSI 310 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~--~~-----~~~~vi~ISA~ 310 (335)
T Consensus 68 ~gIIfVVDssD~~rl~eak~~L~~lL-~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~ 146 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELL-QHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAI 146 (167)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH-CCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEE
T ss_conf 65799985575889999999999996-58877899599998865761589999999881974240899863799957644
Q ss_pred CCCC------HHHHHHHHHH
Q ss_conf 7889------9999999999
Q gi|254780648|r 311 TGHG------IPQILECLHD 324 (335)
Q Consensus 311 tg~G------I~eL~~~I~e 324 (335)
T Consensus 147 tG~G~~~~~~l~eGl~WL~~ 166 (167)
T cd04161 147 EGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCCCCCCCHHHHHHHHHC
T ss_conf 48887876631549989864