HHsearch alignment for GI: 254780648 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.94 E-value=6.6e-09 Score=73.82 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=81.0
Q ss_pred CEEEEECCCCCCCEEEEEECC-CC--C---HHHH----H---H------HCCCEEC-CEEEE----ECCEEEEEECCCCC
Q ss_conf 112442167775303541014-54--0---1212----1---1------0000001-02663----29868998226421
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTR-AK--P---KIAD----Y---P------FTTLYPN-LGIVK----EGYKEFILADIPGI 216 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~-ak--~---kIa~----y---p------FTT~~P~-lGvv~----~~~~~~~i~D~PGl 216 (335)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred CCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC------CCH
Q ss_conf 247311677512344333----3357887520222211013466678998777667505988999974658------998
Q gi|254780648|r 217 IKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT------VDS 286 (335)
Q Consensus 217 IegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl------~~~ 286 (335)
T Consensus 82 ~-----------dF~~ev~~al~~~DgailVVDa~eGv-~~qT~~~l~~a~~-----~~l~~ilviNKiDRLi~el~l~p 144 (213)
T cd04167 82 V-----------NFMDEVAAALRLSDGVVLVVDVVEGV-TSNTERLIRHAIL-----EGLPIVLVINKIDRLILELKLPP 144 (213)
T ss_pred H-----------HHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHH-----CCCCEEEEEECCCCCHHHCCCCH
T ss_conf 4-----------17999998886377679999878887-5779999999998-----69998999988234314406998
Q ss_pred HHHH----HHHHHHH---HHC-----------CCCEEEEECCCCC--------CHHHHHHHHHHHH
Q ss_conf 8999----9999999---862-----------9948999888788--------9999999999999
Q gi|254780648|r 287 DTLA----RKKNELA---TQC-----------GQVPFEFSSITGH--------GIPQILECLHDKI 326 (335)
Q Consensus 287 e~~~----~~~~~l~---~~~-----------~~~vi~ISA~tg~--------GI~eL~~~I~e~L 326 (335)
T Consensus 145 ~day~~~~~ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~i 210 (213)
T cd04167 145 NDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf 999998999999999999970787351656887969999700052123623211689999999638