HHsearch alignment for GI: 254780648 and conserved domain: cd04167

>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.94  E-value=6.6e-09  Score=73.82  Aligned_cols=149  Identities=15%  Similarity=0.195  Sum_probs=81.0

Q ss_pred             CEEEEECCCCCCCEEEEEECC-CC--C---HHHH----H---H------HCCCEEC-CEEEE----ECCEEEEEECCCCC
Q ss_conf             112442167775303541014-54--0---1212----1---1------0000001-02663----29868998226421
Q gi|254780648|r  161 DIGIIGLPNAGKSTFLASVTR-AK--P---KIAD----Y---P------FTTLYPN-LGIVK----EGYKEFILADIPGI  216 (335)
Q Consensus       161 DVglVG~PNaGKSTLln~ls~-ak--~---kIa~----y---p------FTT~~P~-lGvv~----~~~~~~~i~D~PGl  216 (335)
T Consensus         2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf             59998278989899999999973445554044421135751646654203558614599998256675057877889872


Q ss_pred             CCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC------CCH
Q ss_conf             247311677512344333----3357887520222211013466678998777667505988999974658------998
Q gi|254780648|r  217 IKNAHQGAGIGDRFLKHT----ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDT------VDS  286 (335)
Q Consensus       217 IegA~~~~glG~~FLrhI----er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl------~~~  286 (335)
T Consensus        82 ~-----------dF~~ev~~al~~~DgailVVDa~eGv-~~qT~~~l~~a~~-----~~l~~ilviNKiDRLi~el~l~p  144 (213)
T cd04167          82 V-----------NFMDEVAAALRLSDGVVLVVDVVEGV-TSNTERLIRHAIL-----EGLPIVLVINKIDRLILELKLPP  144 (213)
T ss_pred             H-----------HHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHH-----CCCCEEEEEECCCCCHHHCCCCH
T ss_conf             4-----------17999998886377679999878887-5779999999998-----69998999988234314406998


Q ss_pred             HHHH----HHHHHHH---HHC-----------CCCEEEEECCCCC--------CHHHHHHHHHHHH
Q ss_conf             8999----9999999---862-----------9948999888788--------9999999999999
Q gi|254780648|r  287 DTLA----RKKNELA---TQC-----------GQVPFEFSSITGH--------GIPQILECLHDKI  326 (335)
Q Consensus       287 e~~~----~~~~~l~---~~~-----------~~~vi~ISA~tg~--------GI~eL~~~I~e~L  326 (335)
T Consensus       145 ~day~~~~~ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~i  210 (213)
T cd04167         145 NDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf             999998999999999999970787351656887969999700052123623211689999999638