HHsearch alignment for GI: 254780648 and conserved domain: cd04173

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.27  E-value=3.3e-11  Score=87.75  Aligned_cols=152  Identities=15%  Similarity=0.169  Sum_probs=99.3

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC-EEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH--HHH
Q ss_conf             1244216777530354101454012121100000010-26632986--899822642124731167751234433--333
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH--TER  236 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l-Gvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh--Ier  236 (335)
T Consensus         4 iVlvGD~~VGKTsLl~~f~~~~F-~~~y~-pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~---------y~~lr~~yyr~   72 (222)
T cd04173           4 IVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFENYTASFEIDKRRIELNMWDTSGSSY---------YDNVRPLAYPD   72 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCEEEEEEEEEEECCEEEEEEEECCCCCCH---------HHHHHHHHCCC
T ss_conf             99989899898999999963999-99847-845877899999999999999976888503---------45567875036


Q ss_pred             HHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHH------------HHHHHHHHCCC
Q ss_conf             5788752022221101346-6678998777667505988999974658998-89999------------99999986299
Q gi|254780648|r  237 THVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDS-DTLAR------------KKNELATQCGQ  302 (335)
Q Consensus       237 ~~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~-e~~~~------------~~~~l~~~~~~  302 (335)
T Consensus        73 a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~---~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga  149 (222)
T cd04173          73 SDAVLICFDISRPETLDSVLKKWQGETQEFCPN---AKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA  149 (222)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf             989999983897788999999999999985899---97899958742456878899998557888789999999997699


Q ss_pred             -CEEEEECCCCC-CHHHHHHHHHHHHH
Q ss_conf             -48999888788-99999999999998
Q gi|254780648|r  303 -VPFEFSSITGH-GIPQILECLHDKIF  327 (335)
Q Consensus       303 -~vi~ISA~tg~-GI~eL~~~I~e~L~  327 (335)
T Consensus       150 ~~y~EcSAk~~~n~V~evF~~a~~~~~  176 (222)
T cd04173         150 VSYVECSSRSSERSVRDVFHVATVASL  176 (222)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             889988848687498999999999998