HHsearch alignment for GI: 254780648 and conserved domain: cd04174

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.31  E-value=1.1e-11  Score=90.72  Aligned_cols=149  Identities=18%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE-----EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf             12442167775303541014540121211000000102-----6632986--899822642124731167751234433-
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG-----IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH-  233 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG-----vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh-  233 (335)
T Consensus        16 iVlVGD~~VGKTsLl~~~~~~~-----F~-~~y~pTv~~~~~~~i~v~~~~v~L~lWDTAGq-----E~----y~~lr~~   80 (232)
T cd04174          16 LVLVGDVQCGKTAMLQVLAKDC-----YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGS-----PY----YDNVRPL   80 (232)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC-----CC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCCC-----CC----CCHHHHH
T ss_conf             9999989989999999997398-----99-98588368888999999999999999838997-----01----0036799


Q ss_pred             -HHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHH------------HHHHHHHH
Q ss_conf             -333578875202222110134-66678998777667505988999974658998-8999------------99999998
Q gi|254780648|r  234 -TERTHVLLHIVSALEENVQAA-YQCILDELSAYNSELRKKIEIVGLSQIDTVDS-DTLA------------RKKNELAT  298 (335)
Q Consensus       234 -Ier~~vLl~VVD~s~~d~~~~-~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~-e~~~------------~~~~~l~~  298 (335)
T Consensus        81 yY~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~~p~---~piiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~Ak  157 (232)
T cd04174          81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPS---TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK  157 (232)
T ss_pred             HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             7406878999996898799998999999999986899---9789998760215475778899756888757999999999


Q ss_pred             HCCCC-EEEEECCCCC-CHHHHHHHHHHHHHH
Q ss_conf             62994-8999888788-999999999999985
Q gi|254780648|r  299 QCGQV-PFEFSSITGH-GIPQILECLHDKIFS  328 (335)
Q Consensus       299 ~~~~~-vi~ISA~tg~-GI~eL~~~I~e~L~~  328 (335)
T Consensus       158 ~iga~~Y~E~SA~tge~~v~~vF~~a~~~~~~  189 (232)
T cd04174         158 QLGAEVYLECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             74997899875686662599999999999985