HHsearch alignment for GI: 254780648 and conserved domain: cd04176

>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.59  E-value=5.7e-15  Score=110.60  Aligned_cols=153  Identities=12%  Similarity=0.123  Sum_probs=105.6

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf             124421677753035410145401212110000001-02663298--689982264212473116775123443--3333
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER  236 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer  236 (335)
T Consensus         4 ivllGd~~VGKTsli~r~~~~~f-~~~y~pT-i~~~~~k~i~~~~~~~~l~iwDtaG~e~---------~~~~~~~~~~~   72 (163)
T cd04176           4 VVVLGSGGVGKSALTVQFVSGTF-IEKYDPT-IEDFYRKEIEVDSSPSVLEILDTAGTEQ---------FASMRDLYIKN   72 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-CCCEEEEEEEECCEEEEEEEEECCCCHH---------HHHHHHHHHCC
T ss_conf             99989999789999999970989-9755885-2331679999888999999998988542---------56788998557


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             57887520222211013466678998777667505988999974658998899-99999999862994899988878899
Q gi|254780648|r  237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGI  315 (335)
Q Consensus       237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI  315 (335)
T Consensus        73 a~~~ilvydit~~~Sf~~l~~~~~~i~~~~-~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV  151 (163)
T cd04176          73 GQGFIVVYSLVNQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV  151 (163)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             865689712798899999999999999973-8999639997431340012769999999999985998999856878177


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780648|r  316 PQILECLHDKI  326 (335)
Q Consensus       316 ~eL~~~I~e~L  326 (335)
T Consensus       152 ~~~F~~l~~~i  162 (163)
T cd04176         152 NELFAEIVRQM  162 (163)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999953