HHsearch alignment for GI: 254780648 and conserved domain: cd04176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.59 E-value=5.7e-15 Score=110.60 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=105.6
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH--HHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443--3333
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK--HTER 236 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr--hIer 236 (335)
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f-~~~y~pT-i~~~~~k~i~~~~~~~~l~iwDtaG~e~---------~~~~~~~~~~~ 72 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTF-IEKYDPT-IEDFYRKEIEVDSSPSVLEILDTAGTEQ---------FASMRDLYIKN 72 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCC-CCCEEEEEEEECCEEEEEEEEECCCCHH---------HHHHHHHHHCC
T ss_conf 99989999789999999970989-9755885-2331679999888999999998988542---------56788998557
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 57887520222211013466678998777667505988999974658998899-99999999862994899988878899
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI 315 (335)
T Consensus 73 a~~~ilvydit~~~Sf~~l~~~~~~i~~~~-~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd04176 73 GQGFIVVYSLVNQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 865689712798899999999999999973-8999639997431340012769999999999985998999856878177
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780648|r 316 PQILECLHDKI 326 (335)
Q Consensus 316 ~eL~~~I~e~L 326 (335)
T Consensus 152 ~~~F~~l~~~i 162 (163)
T cd04176 152 NELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999953