HHsearch alignment for GI: 254780648 and conserved domain: cd04177
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=1.2e-14 Score=108.64 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=105.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
T Consensus 4 ivlvGd~~VGKTsli~rf~~~~f-~~~y~-pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~----~~~~~~~---~~~~a~ 74 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVF-IESYD-PTIEDSYRKQVEIDGRQCDLEILDTAGTEQ----FTAMREL---YIKSGQ 74 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEECCEEEEEEEEECCCCCC----CCCCHHH---HHCCCC
T ss_conf 99989999779999999961938-98658-833315999999999999999982788623----3345154---512686
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCC-CCEEEEECCCCCCHH
Q ss_conf 887520222211013466678998777667505988999974658998899-999999998629-948999888788999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCG-QVPFEFSSITGHGIP 316 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~-~~vi~ISA~tg~GI~ 316 (335)
T Consensus 75 ~~ilvydvt~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~DL~~~r~v~~~e~~~~a~~~~~~~~~E~SAk~~~nV~ 153 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 67985368988899999999999998517-88874898873146121376899999999997499779996248784689
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999854
Q gi|254780648|r 317 QILECLHDKIFSI 329 (335)
Q Consensus 317 eL~~~I~e~L~~~ 329 (335)
T Consensus 154 e~F~~l~~~il~~ 166 (168)
T cd04177 154 EVFIDLVRQIICV 166 (168)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998