HHsearch alignment for GI: 254780648 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.70 E-value=5.3e-08 Score=68.32 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=81.9
Q ss_pred EEEEECCCCCCCEEEEEEC-CCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCC---CCCCCCCCCCHHHHHHH-HH
Q ss_conf 1244216777530354101-45401212110000001026632-9868998226421---24731167751234433-33
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT-RAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGI---IKNAHQGAGIGDRFLKH-TE 235 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls-~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGl---IegA~~~~glG~~FLrh-Ie 235 (335)
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~-----~~-~e~if~ 75 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLT-----RQ-KEHIFS 75 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCC-----CC-HHHHHH
T ss_conf 787568999877769998679982141202577776778774168736899976983535441200-----22-354764
Q ss_pred HHHHHHHHCCCCCCCHHHHHH---HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 357887520222211013466---67899877766750598899997465899889999999999
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQ---CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELA 297 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~---~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~ 297 (335)
T Consensus 76 ~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~---~v~vfiHK~D~l~~d~r~~~~~~~~ 137 (230)
T pfam04670 76 NVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNA---KVFVLIHKMDLLSEDERKEIFEDRK 137 (230)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---EEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 4788999996888609999999999999999839998---8999996035888667899999999