HHsearch alignment for GI: 254780648 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=98.56 E-value=6.3e-07 Score=61.80 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=88.2
Q ss_pred ECEEEEECCCCCCCEEEEEECCCCCH------HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 01124421677753035410145401------212110000001026632986899822642124731167751234433
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAKPK------IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak~k------Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
T Consensus 36 lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvve-tT~~~~~Y-~hp~~pnV~lwDLPG~gt~~f~----~~~Yl~~ 109 (375)
T pfam05049 36 LKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVVE-TTMKRTPY-SHPHFPNVVLWDLPGLGATNFT----VETYLEE 109 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE-ECCCCCCC-CCCCCCCEEEECCCCCCCCCCC----HHHHHHH
T ss_conf 4799854899867899998747898777768768766-32675567-8999998079628999989989----8999987
Q ss_pred H--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC------------CHHHHH-HHH----H
Q ss_conf 3--33578875202222110134666789987776675059889999746589------------988999-999----9
Q gi|254780648|r 234 T--ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV------------DSDTLA-RKK----N 294 (335)
Q Consensus 234 I--er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~------------~~e~~~-~~~----~ 294 (335)
T Consensus 110 ~~f~~yDfFii--iss~r-f~~n~v~LAk~i~~-----mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~IR~~c~~ 181 (375)
T pfam05049 110 MKFSEYDFFII--ISSER-FSLNDVKLAKAIQR-----MGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQNIQDNCRN 181 (375)
T ss_pred CCCCCCCEEEE--EECCC-CCHHHHHHHHHHHH-----HCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 48564778999--96775-43201899999998-----389479998623676065762589999989999999999999
Q ss_pred HHHHHC--CCCEEEEECC--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999862--9948999888--788999999999999985452
Q gi|254780648|r 295 ELATQC--GQVPFEFSSI--TGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 295 ~l~~~~--~~~vi~ISA~--tg~GI~eL~~~I~e~L~~~r~ 331 (335)
T Consensus 182 ~L~k~gv~eP~VFLvSnfdl~~yDFp~L~~TL~~eLP~hKR 222 (375)
T pfam05049 182 NLQKEGVKEPPIFLVSNLDPSHYDFPKLRDTLLKDLPIIKR 222 (375)
T ss_pred HHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99875888997899817881326818999999987368678