HHsearch alignment for GI: 254780648 and conserved domain: smart00176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=9e-15 Score=109.38 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=106.5
Q ss_pred EECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 421677753035410145401212110000001026------63298--6899822642124731167751234433333
Q gi|254780648|r 165 IGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTER 236 (335)
Q Consensus 165 VG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer 236 (335)
T Consensus 1 vGD~gVGKTsli~R~~~~~F~------~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE----~f~sl~~~---yyr~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----KFGGLRDG---YYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCC------CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCCHH---HCCC
T ss_conf 989887899999999409999------9978871489899999989989999999898870----00110265---5057
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 57887520222211013466678998777667505988999974658998899999999998629948999888788999
Q gi|254780648|r 237 THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 237 ~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
T Consensus 68 a~~~IlvfDvt~~~SF~~l~~W~~~l~~~~~---~ipiiLvGNK~DL~~r~V~-~e~~~~a~~~~~~y~EtSAKt~~Nv~ 143 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKDRKVK-AKSITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCCCC-HHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 8788999635877899989999999998579---9988999988757404365-99999999879978983004696979
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998545
Q gi|254780648|r 317 QILECLHDKIFSIR 330 (335)
Q Consensus 317 eL~~~I~e~L~~~r 330 (335)
T Consensus 144 e~F~~Lar~L~~~~ 157 (200)
T smart00176 144 KPFLWLARKLIGDP 157 (200)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999983899