HHsearch alignment for GI: 254780648 and conserved domain: smart00177

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78  E-value=4.4e-19  Score=135.52  Aligned_cols=153  Identities=20%  Similarity=0.199  Sum_probs=103.4

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL  241 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl  241 (335)
T Consensus        16 ililG~~~~GKTsil~~l~~~~~~-~~~--pTvg~~~~~~~~~~~~l~iwD~~Gq----e~~r~l~~~---Yy~~a~~iI   85 (175)
T smart00177       16 ILMVGLDAAGKTTILYKLKLGESV-TTI--PTIGFNVETVTYKNISFTVWDVGGQ----DKIRPLWRH---YYTNTQGLI   85 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCC-CCC--CCCCCEEEEEEECCEEEEEEECCCC----CCCCHHHHH---HCCCCCEEE
T ss_conf             999988999989999999659977-757--9788107999989899999989998----545536777---557761899


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCH
Q ss_conf             520222211013466678998777--66750598899997465899889999999999----862994899988878899
Q gi|254780648|r  242 HIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSITGHGI  315 (335)
Q Consensus       242 ~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~tg~GI  315 (335)
T Consensus        86 fVvD~sd~~~~~~~---~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~GI  162 (175)
T smart00177       86 FVVDSNDRDRIDEA---REELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGL  162 (175)
T ss_pred             EEEECCCHHHHHHH---HHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCCH
T ss_conf             99866877899999---999999963153169869999845667678899999999686654079759998268789698


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999998
Q gi|254780648|r  316 PQILECLHDKIF  327 (335)
Q Consensus       316 ~eL~~~I~e~L~  327 (335)
T Consensus       163 ~e~f~wL~~~ik  174 (175)
T smart00177      163 YEGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999844