RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus
Liberibacter asiaticus str. psy62]
(335 letters)
>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 536 bits (1384), Expect = e-153
Identities = 184/335 (54%), Positives = 247/335 (73%), Gaps = 2/335 (0%)
Query: 2 KFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRY 61
KF+DEAK+Y+++GDGG G +SFRREKFI FGGPDGG GGRGG V ++A NLNTLIDFRY
Sbjct: 1 KFIDEAKIYVKAGDGGNGCVSFRREKFIPFGGPDGGDGGRGGSVILEADENLNTLIDFRY 60
Query: 62 QQHFKAQHGEKGMKRNRSGAKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGG 121
++HFKA++GE GM RNR+G G+D+VL VPVGTQ+++ D LI DL + GQR ++A GG
Sbjct: 61 KRHFKAENGENGMGRNRTGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGG 120
Query: 122 NGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTR 181
GG GNAHFKSSTN+AP YA PG G+E+ + L+LKL+AD+G++GLPNAGKST +++V+
Sbjct: 121 KGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSA 180
Query: 182 AKPKIADYPFTTLYPNLGIVK-EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240
AKPKIADYPFTTL+PNLG+V+ + YK F++ADIPG+I+ A +GAG+G RFLKH ERT +L
Sbjct: 181 AKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLL 240
Query: 241 LHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC 300
LH+V + Y+ I +EL Y+ EL K I+ L++ID +D + K+ L
Sbjct: 241 LHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAA 300
Query: 301 GQVP-FEFSSITGHGIPQILECLHDKIFSIRGENE 334
P F S++TG G+ ++L L + + R E E
Sbjct: 301 LGGPVFLISAVTGEGLDELLRALWELLEEARREEE 335
>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal.
Length = 329
Score = 491 bits (1267), Expect = e-139
Identities = 174/328 (53%), Positives = 242/328 (73%), Gaps = 4/328 (1%)
Query: 3 FLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQ 62
F+DEAK+++++GDGG G +SFRREK++ GGPDGG GGRGG V ++A NLNTL+DFRYQ
Sbjct: 1 FVDEAKIFVKAGDGGNGCVSFRREKYVPKGGPDGGDGGRGGSVILEADENLNTLLDFRYQ 60
Query: 63 QHFKAQHGEKGMKRNRSGAKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGN 122
+HFKA++GE GM +NR+G GED+V+ VPVGT V++ D L+ DL + GQR ++A GG
Sbjct: 61 RHFKAENGENGMGKNRTGKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGR 120
Query: 123 GGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182
GG GNAHFKSSTN+AP +A PG G+E+ + L+LKL+AD+G++GLPNAGKST +++V+ A
Sbjct: 121 GGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA 180
Query: 183 KPKIADYPFTTLYPNLGIVK-EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241
KPKIADYPFTTL PNLG+V+ + + F++ADIPG+I+ A +GAG+G RFLKH ERT VLL
Sbjct: 181 KPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLL 240
Query: 242 HIVSA---LEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT 298
H++ + Y+ I +EL Y+ EL +K IV L++ID +D + LA EL
Sbjct: 241 HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK 300
Query: 299 QCGQVPFEFSSITGHGIPQILECLHDKI 326
G+ F S++TG G+ ++L L + +
Sbjct: 301 ALGKPVFPISALTGEGLDELLYALAELL 328
>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 451 bits (1162), Expect = e-127
Identities = 154/340 (45%), Positives = 228/340 (67%), Gaps = 6/340 (1%)
Query: 1 MKFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFR 60
MKF+DEAK+ + +GDGG G +SFRREK+I GGPDGG GG GGDV+++A NLNTLID+R
Sbjct: 1 MKFVDEAKIRVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVYLEADENLNTLIDYR 60
Query: 61 YQQHFKAQHGEKGMKRNRSGAKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPG 120
+++HF+A+ G+ G R+ +G +G+D+ + VPVGT+V + D +I DL + GQR+++A G
Sbjct: 61 FERHFRAERGQNGQGRDCTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKG 120
Query: 121 GNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVT 180
G G GN FKSS N+AP PG G+E+ + L+LKL+AD+G++GLPNAGKSTF+ +V+
Sbjct: 121 GWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVS 180
Query: 181 RAKPKIADYPFTTLYPNLGIVKEGY-KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239
AKPK+ADYPFTTL PNLG+V+ + F++ADIPG+I+ A +GAG+G RFLKH ER V
Sbjct: 181 AAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240
Query: 240 LLHIVSAL---EENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNEL 296
LLH++ + + I++EL Y+ +L +K + ++ID +D + + +
Sbjct: 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAI 300
Query: 297 ATQCG-QVP-FEFSSITGHGIPQILECLHDKIFSIRGENE 334
G + P + S+ +G G+ ++ L I E
Sbjct: 301 VEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEA 340
>gnl|CDD|183415 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 430 bits (1109), Expect = e-121
Identities = 151/334 (45%), Positives = 226/334 (67%), Gaps = 9/334 (2%)
Query: 2 KFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFRY 61
F+D+AK+Y+++GDGG G +SFRREK++ GGPDGG GG+GG V A L TL+DFRY
Sbjct: 1 MFIDQAKIYVKAGDGGDGMVSFRREKYVPKGGPDGGDGGKGGSVIFVADEGLRTLLDFRY 60
Query: 62 QQHFKAQHGEKGMKRNRSGAKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGG 121
++HFKA++GE GM +N G GED+++ VPVGT V + + +I DL + GQ +++A GG
Sbjct: 61 KRHFKAENGENGMGKNMHGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGG 120
Query: 122 NGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVTR 181
GG GNAHF +STNQAP A G G+E+ + L+LKL+AD+G++G PN GKST L+ V+
Sbjct: 121 RGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSN 180
Query: 182 AKPKIADYPFTTLYPNLGIVK-EGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240
AKPKIA+Y FTTL PNLG+V+ + + F++ADIPG+I+ A +G G+G +FL+H ERT V+
Sbjct: 181 AKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVI 240
Query: 241 LHIV--SALE-ENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS-DTLARKKNEL 296
+H++ S E + Y+ I EL YN L ++ +IV +++D ++ + L K +L
Sbjct: 241 VHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKL 300
Query: 297 ATQCGQVPFEFSSITGHGIPQILECLHDKIFSIR 330
+ F S++TG G+ ++L + + +
Sbjct: 301 GPK----VFPISALTGQGLDELLYAVAELLEETP 330
>gnl|CDD|183414 PRK12296, obgE, GTPase CgtA; Reviewed.
Length = 500
Score = 320 bits (823), Expect = 3e-88
Identities = 143/329 (43%), Positives = 202/329 (61%), Gaps = 18/329 (5%)
Query: 1 MKFLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATSNLNTLIDFR 60
+F+D +++++GDGG G S REKF GGPDGG+GGRGG V + + TL+DF
Sbjct: 2 PRFVDRVVLHVKAGDGGNGCASVHREKFKPLGGPDGGNGGRGGSVVLVVDPQVTTLLDFH 61
Query: 61 YQQHFKAQHGEKGMKRNRSGAKGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPG 120
++ H KA +G+ GM NR GA GED+VL VP GT V +EDG ++ DL G R + A G
Sbjct: 62 FRPHRKATNGKPGMGDNRDGAAGEDLVLPVPDGTVVLDEDG-EVLADLVGAGTRFVAAAG 120
Query: 121 GNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAGKSTFLASVT 180
G GG GNA S +AP +A G G+E+ + L+LK +AD+G++G P+AGKS+ +++++
Sbjct: 121 GRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALS 180
Query: 181 RAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVL 240
AKPKIADYPFTTL PNLG+V+ G F +AD+PG+I A +G G+G FL+H ER VL
Sbjct: 181 AAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVL 240
Query: 241 LHIV--SALE------------ENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS 286
+H+V + LE E AAY LD +L ++ +V L++ID D+
Sbjct: 241 VHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGL-GDLAERPRLVVLNKIDVPDA 299
Query: 287 DTLAR-KKNELATQCGQVPFEFSSITGHG 314
LA + EL + V FE S+ + G
Sbjct: 300 RELAEFVRPELEARGWPV-FEVSAASREG 327
>gnl|CDD|181982 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
Length = 396
Score = 86.0 bits (214), Expect = 1e-17
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 26/110 (23%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI--------------------- 200
IG++G PN GKSTF + T A +IA+YPFTT+ PN+G+
Sbjct: 4 IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNG 63
Query: 201 -VKEGYKEFI---LADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSA 246
+G + FI L D+ G++ AH+G G+G++FL + L+H+V A
Sbjct: 64 KCIDGTR-FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDA 112
>gnl|CDD|181981 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 85.5 bits (213), Expect = 2e-17
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 22/110 (20%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVK----------EGYK----- 206
GI+GLPN GKST ++T+A + A+YPF T+ PN+G+V E K
Sbjct: 5 CGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64
Query: 207 ----EFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALE-ENV 251
EF+ DI G++K A +G G+G++FL + ++H+V E +N+
Sbjct: 65 PATIEFV--DIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDNI 112
>gnl|CDD|185530 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 76.9 bits (190), Expect = 6e-15
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIV-----------------KEG 204
+GI+GLPN GKST ++ + + ++PF T+ PN V
Sbjct: 24 MGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIV 83
Query: 205 YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALE-ENVQAAYQCI--LDE 261
+ + DI G++K A +G G+G+ FL H + H+V A E E++ I + +
Sbjct: 84 PAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRD 143
Query: 262 LSAYNSELRKK-IEIV 276
L +SEL K +E V
Sbjct: 144 LEIISSELILKDLEFV 159
>gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional.
Length = 426
Score = 54.3 bits (131), Expect = 5e-08
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGYKEFILADIPGII 217
+ + ++G NAGKST +T A+ AD F TL P L I E +LAD G I
Sbjct: 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFI 256
Query: 218 KN-AHQGAGIGDRFLKHTERTHVLLHIVSA----LEENVQAAYQCILDELSAYNSELRKK 272
++ H L+ T + +LLH+V A ++EN++A +L+E+ A+
Sbjct: 257 RHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNT-VLEEIDAH------- 308
Query: 273 IEIVGL---SQIDTVDSDTLARKKNELATQCGQVPFE--FSSITGHGIPQILECLHDKI 326
EI L ++ID +D ++E P S+ TG GIP + + L +++
Sbjct: 309 -EIPTLLVMNKIDMLDDFEPRIDRDE-----ENKPIRVWLSAQTGAGIPLLFQALTERL 361
>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF. This predicted
GTP-binding protein is found in a single copy in every
complete bacterial genome, and is found in Eukaryotes. A
more distantly related protein, separated from this
model, is found in the archaea. It is known to bind GTP
and double-stranded nucleic acid. It is suggested to
belong to a nucleoprotein complex and act as a
translation factor.
Length = 368
Score = 52.5 bits (126), Expect = 2e-07
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 163 GIIGLPNAGKSTFLASVTRA-KPKIADYPFTTLYPNLGIV-----------------KEG 204
GI+GLPN GKST A+ T + A+ PFTT+ PN G+V K
Sbjct: 6 GIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVP 65
Query: 205 YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSALEE 249
DI G++ A +G G+G++FL + ++ H+V E+
Sbjct: 66 PTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFED 110
>gnl|CDD|178854 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 47.7 bits (115), Expect = 4e-06
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 162 IGIIGLPNAGKSTFLASVTRAK-----PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216
+ I+G PN GKST L ++ K PK P TT + GIV E + I D PGI
Sbjct: 8 VAIVGRPNVGKSTLLNALVGQKISIVSPK----PQTTRHRIRGIVTEDDAQIIFVDTPGI 63
Query: 217 IKNAHQGAGIGDRFLKHTERT----HVLLHIVSALEENVQAAYQCILDELSAYNSELRKK 272
K + K + ++L +V A E+ + + IL++L
Sbjct: 64 HKPKRA---LNRAMNKAAWSSLKDVDLVLFVVDADEK-IGPGDEFILEKLKKVK----TP 115
Query: 273 IEIVGLSQIDTV-DSDTLARKKNELATQCGQVPFE----FSSITGHGIPQILECL 322
+ I+ L++ID V D + L EL+ + F S++ G + ++L+ +
Sbjct: 116 V-ILVLNKIDLVKDKEELLPLLEELS---ELMDFAEIVPISALKGDNVDELLDVI 166
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein.
Length = 270
Score = 47.8 bits (114), Expect = 4e-06
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220
+ I+G PN GKST L + K I + TT GI G + I D PG +
Sbjct: 3 VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK 62
Query: 221 H 221
H
Sbjct: 63 H 63
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model
recognizes a large number of small GTP-binding proteins
and related domains in larger proteins. Note that the
alpha chains of heterotrimeric G proteins are larger
proteins in which the NKXD motif is separated from the
GxxxxGK[ST] motif (P-loop) by a long insert and are not
easily detected by this model.
Length = 161
Score = 45.4 bits (108), Expect = 2e-05
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKN 219
I I+G PN GKST L + K P TT +++E K +F L D G
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED- 62
Query: 220 AHQGAGIGDRFLKHTERTHVLLHIVSAL---EENVQAAYQCILDELSAYNSELRKKIEIV 276
I + + E + + IV + EE ++ + I+ E I +V
Sbjct: 63 ---YRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-----ESNVPIILV 114
Query: 277 GLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGI 315
G ++ID D+ A G+ S+ TG I
Sbjct: 115 G-NKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNI 152
>gnl|CDD|163162 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like).
Length = 351
Score = 45.2 bits (108), Expect = 3e-05
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL-GIVKEGYKEFILADIPGIIKNA 220
+ ++G NAGKST ++T A AD F TL P + E +L D G I
Sbjct: 192 VALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI--- 248
Query: 221 HQGAGIGDRFLKHT---------ERTH---VLLHIVSALEENVQ---AAYQCILDELSAY 265
R L H E +LLH+V A + + + A + +L+EL A
Sbjct: 249 --------RDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA- 299
Query: 266 NSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILE 320
+V ++ID +D + R + V S+ TG G+ +LE
Sbjct: 300 ---EDIPQLLV-YNKIDLLDEPRIERLEEGYP---EAVF--VSAKTGEGLDLLLE 345
>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability.
Length = 429
Score = 41.7 bits (99), Expect = 3e-04
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIA-DYPFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220
I IIG PN GKST + ++ + I D TT + K+++L D GI +
Sbjct: 175 IAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKG 234
Query: 221 HQGAGIGDRF-----LKHTERTHVLLHIVSALEENVQAAYQCILDE-LSAYNSELRKKIE 274
G+ +++ LK ER V+L ++ A E + D ++ E K
Sbjct: 235 KVTEGV-EKYSVLRTLKAIERADVVLLVLDATEGITE------QDLRIAGLILE-AGKAL 286
Query: 275 IVGLSQIDTV-DSDTLARKKNELATQ---CGQVPFEF-SSITGHGIPQILE 320
++ +++ D V D T K EL + P F S++TG G+ ++L+
Sbjct: 287 VIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLD 337
Score = 35.1 bits (82), Expect = 0.023
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220
+ I+G PN GKST +T + I +D P T G + G +EFIL D GI ++
Sbjct: 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD 61
Query: 221 HQGAGIGDRFLKHTER----THVLLHIVSA 246
G+ + + E V+L +V
Sbjct: 62 D---GLDKQIREQAEIAIEEADVILFVVDG 88
>gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 38.2 bits (90), Expect = 0.003
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 146 LGQEKIIWLKLKLIADIG----IIGLPNAGKSTF---LASVTRAKPKIADYPFTTLYPNL 198
L +EK K K + IIG+PN GKST LA + K + P T
Sbjct: 104 LLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG--KKIAKTGNRPGVT--KAQ 159
Query: 199 GIVKEGYKEFILADIPGII 217
+K G K L D PGI+
Sbjct: 160 QWIKLG-KGLELLDTPGIL 177
>gnl|CDD|161878 TIGR00437, feoB, ferrous iron transporter FeoB. FeoB (773 amino
acids in E. coli), a cytoplasmic membrane protein
required for iron(II) update, is encoded in an operon
with FeoA (75 amino acids), which is also required, and
is regulated by Fur. There appear to be two copies in
Archaeoglobus fulgidus and Clostridium acetobutylicum.
Length = 591
Score = 36.6 bits (85), Expect = 0.008
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 166 GLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIK-NAHQGA 224
G PN GKST ++T A + ++P T+ G + ++ + D+PGI
Sbjct: 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE 60
Query: 225 GIGDRFLKHTERTHVLLHIVSA--LEEN 250
R E+ +++++V A LE N
Sbjct: 61 EEVARDYLLNEKPDLVVNVVDASNLERN 88
>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 36.6 bits (86), Expect = 0.010
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 47/184 (25%)
Query: 162 IGIIGLPNAGKSTFL--------------ASVTR-AKPKIADYPFTTLYPNLGIVKEGYK 206
I IIG PN GKS+ + A TR + I D PF ++G +
Sbjct: 176 IAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDS---I-DTPFE---------RDG-Q 221
Query: 207 EFILADIPGIIKNAHQGAGIGDRF-----LKHTERTHVLLHIVSALEENVQAAYQCILDE 261
++ L D GI + G+ +++ LK ER V+L ++ A E + D
Sbjct: 222 KYTLIDTAGIRRKGKVTEGV-EKYSVIRTLKAIERADVVLLVIDATEGITE------QDL 274
Query: 262 -LSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELAT---QCGQVPFEF-SSITGHGIP 316
++ E + + ++ +++ D VD T+ K EL P F S++TG G+
Sbjct: 275 RIAGLALEAGRAL-VIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVD 333
Query: 317 QILE 320
++LE
Sbjct: 334 KLLE 337
Score = 31.9 bits (74), Expect = 0.21
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 156 LKLIADIGIIGLPNAGKSTFLASVTRAKPKI-ADYPFTT---LYPNLGIVKEGYKEFILA 211
++A I+G PN GKST +T + I AD P T +Y G + +EFIL
Sbjct: 1 KPVVA---IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY---GEAEWLGREFILI 54
Query: 212 DIPGI 216
D GI
Sbjct: 55 DTGGI 59
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 33.7 bits (78), Expect = 0.059
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPG 215
+I +G N GKST + +T K ++ P T PN + +FIL D+PG
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN----HYDWGDFILTDLPG 61
>gnl|CDD|132636 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli.
Length = 360
Score = 33.4 bits (77), Expect = 0.094
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN--LGIVK-EGYKEFILADIPGII 217
D+ ++G+ N GKS+ + + + D T+ +P L +++ L D PGII
Sbjct: 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGII 215
Query: 218 KNAHQGAG-IGDRFLK 232
N+HQ A + + LK
Sbjct: 216 -NSHQMAHYLDKKDLK 230
>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members.
Length = 276
Score = 33.3 bits (77), Expect = 0.099
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 164 IIGLPNAGKSTF---LASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGII 217
I+G+PN GKST LA + K+ + P T +K L D PGI+
Sbjct: 123 IVGIPNVGKSTLINRLAG--KKVAKVGNRPGVT--KGQQWIKLS-DGLELLDTPGIL 174
>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional.
Length = 339
Score = 32.8 bits (74), Expect = 0.13
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 162 IGIIGLPNAGKSTFLASVTRAK-----PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216
+ IIG PN+GKST L + K PK+ TT GI+ + IL D PGI
Sbjct: 55 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ----TTRSIITGIITLKDTQVILYDTPGI 110
Query: 217 I--KNAHQGAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIE 274
K + + A + + VLL I+ +L+ + ILD+L + N +
Sbjct: 111 FEPKGSLEKAMVRCAWSSLHSADLVLL-IIDSLKSFDDITHN-ILDKLRSLNI-----VP 163
Query: 275 IVGLSQIDTVDSDTLARKKNELA-TQCGQVPFEFSSITGHGIPQILECLHDK 325
I L++ID ++S L K L + F S+++G I +LE + K
Sbjct: 164 IFLLNKID-IESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSK 214
>gnl|CDD|161885 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer.
Length = 442
Score = 32.5 bits (74), Expect = 0.17
Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 155 KLKLIAD---IGIIGLPNAGKSTFL-ASVTRAKPKIADYPFTTL-YPNLGIVKEGYKEFI 209
KL+ + D + I+G PN GKS+ L A + + + ++D TT G
Sbjct: 196 KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL-IK 254
Query: 210 LADIPGIIKNAHQGAGIG-DRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSE 268
L D GI ++A +G ++ K ++ ++++++ A + + D L ++
Sbjct: 255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKD------DFLIIDLNK 308
Query: 269 LRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKI 326
+K I+ L++ID L E + S I +++ L KI
Sbjct: 309 SKKPF-ILVLNKID------LKINSLEFFVSSKVLNSSNLSAKQLKIKALVDLLTQKI 359
>gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 31.6 bits (72), Expect = 0.26
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216
IG+IG PN+GK+T +T A+ ++ ++ T+ G + L D+PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 31.3 bits (71), Expect = 0.33
Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIA-DYPFTTLYPNLGIVKEGYKEFILADIPGIIKNA 220
+ ++G PN GKS+ L +T + + D TT P IV+ ++++ D GI +
Sbjct: 453 VALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQ 512
Query: 221 HQGAG----IGDRFLKHTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKI 273
H+ G R ER+ + L + A + E +D A
Sbjct: 513 HKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRAL-------- 564
Query: 274 EIVGLSQIDTVDSDTLARKKNELATQCGQVPF----EFSSITGHGIPQI 318
++ ++ D +D R + T+ +V + S+ TG ++
Sbjct: 565 -VLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRL 612
>gnl|CDD|181855 PRK09435, PRK09435, membrane ATPase/protein kinase; Provisional.
Length = 332
Score = 30.2 bits (69), Expect = 0.83
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 162 IGIIGLPNAGKSTFL 176
IGI G+P GKSTF+
Sbjct: 59 IGITGVPGVGKSTFI 73
>gnl|CDD|152431 pfam11996, DUF3491, Protein of unknown function (DUF3491). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 286 to 3225 amino acids in length.
This protein is found associated with pfam04488. This
protein is found associated with pfam04488.
Length = 934
Score = 30.1 bits (68), Expect = 0.85
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 10 YIRSGDG-GAGGISFRREKFIE-FGGPDGGSGGRGGDVWIQATSNLNTLIDFRYQQHFKA 67
Y+R G G GA + F+ FIE + + + S+ + I+ Y+ H +
Sbjct: 624 YVREGTGIGAIRLVFKN-FFIESMDTISEKTLEKEAKPIL--ASDPHRFINPSYRNHLEL 680
Query: 68 QHGEK 72
GE
Sbjct: 681 FLGEG 685
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 29.6 bits (67), Expect = 1.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 162 IGIIGLPNAGKSTFLASVTR 181
+ IIG AGKST L + R
Sbjct: 31 VAIIGPSGAGKSTLLRCINR 50
>gnl|CDD|179996 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 29.3 bits (67), Expect = 1.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 164 IIGLPNAGKSTFL 176
I G PN GKS+ L
Sbjct: 220 IAGRPNVGKSSLL 232
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. Mutations have
also been found that do not phosphorylate the
periplasmic binding proteins, yet still allow transport.
The ATPase activity of this protein seems to be
necessary, however.
Length = 300
Score = 29.0 bits (65), Expect = 1.7
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 19/68 (27%)
Query: 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAH 221
+GI G P AGKST L ++ + + + G K ++A P
Sbjct: 37 VGITGTPGAGKSTLLEALG-----------------MELRRRGLKVAVIAVDPSSPFTG- 78
Query: 222 QGAGIGDR 229
G+ +GDR
Sbjct: 79 -GSILGDR 85
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 160 ADIGIIGLPNAGKSTFL 176
A IG++GL AGKST L
Sbjct: 32 AKIGVLGLNGAGKSTLL 48
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 28.5 bits (65), Expect = 2.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 160 ADIGIIGLPNAGKSTFL 176
A IG++GL AGKST L
Sbjct: 34 AKIGVLGLNGAGKSTLL 50
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 28.1 bits (63), Expect = 3.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 275 IVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKI 326
++ L++ D V + ++ L Q G P S TG G+ +LE L +KI
Sbjct: 124 VLCLNKADLVSPTEQQQWQDRLQ-QWGYQPLFISVETGIGLEALLEQLRNKI 174
>gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1 and Miro-2), are atypical Rho GTPases. They have
a unique domain organisation, with tandem GTP-binding
domains and two EF hand domains (pfam00036), that may
bind calcium. They are also larger than classical small
GTPases. It has been proposed that they are involved in
mitochondrial homeostasis and apoptosis.
Length = 118
Score = 27.8 bits (62), Expect = 3.9
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 162 IGIIGLPNAGKSTFLASV---TRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIK 218
+ +IG +GKS+ L+ + + TL + V + + D G +
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREE 61
Query: 219 NAHQ 222
+
Sbjct: 62 LKFE 65
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 27.4 bits (62), Expect = 5.3
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 162 IGIIGLPN-AGKSTFLASVT 180
+ I+G PN AGKST L +++
Sbjct: 31 VAILG-PNGAGKSTLLRALS 49
>gnl|CDD|181450 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 27.4 bits (61), Expect = 5.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 101 GISLICDLDQEGQ 113
G++LICDL +E +
Sbjct: 575 GVALICDLSEEIE 587
>gnl|CDD|180792 PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.
Length = 409
Score = 27.3 bits (61), Expect = 6.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 115 IILAPGGNGGFGNAHFKSSTNQAPYYA-----NPG--ILGQE 149
I +APG N G+A F+++ AP YA NPG IL E
Sbjct: 313 IGIAPGANINDGHAIFEATHGTAPKYAGLDKVNPGSVILSAE 354
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 26.5 bits (59), Expect = 9.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 164 IIGLPNAGKSTFLA 177
+IG P +GK+T L
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA.
Length = 431
Score = 26.7 bits (59), Expect = 9.3
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 25/113 (22%)
Query: 83 GEDVVL---------TVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSS 133
GE++V+ T+P+ Q GI ++ + ++ Q+ NA
Sbjct: 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ------------NAELNGI 339
Query: 134 TNQAPYYANPGILGQEKIIWLKLKLIADIGIIGLPNAG-KSTFLASVTRAKPK 185
N + A G L I D+ ++ P G + L ++ KP+
Sbjct: 340 AN-VEFLA--GTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELKPE 389
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 26.7 bits (59), Expect = 9.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 262 LSAYNSELRKKIEIVGLSQIDTVDSDTL--ARKKNELATQCGQVPF----EFSSITGHGI 315
L+ Y EL+ I ++GL Q+ D + AR+ TQ PF +F+ + G +
Sbjct: 361 LAQYE-ELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQ----PFFTTEQFTGMKGKTV 415
Query: 316 P 316
Sbjct: 416 S 416
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.140 0.412
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,634,211
Number of extensions: 372426
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 58
Length of query: 335
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 241
Effective length of database: 3,963,321
Effective search space: 955160361
Effective search space used: 955160361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)