HHsearch alignment for GI: 254780649 and conserved domain: cd02172

>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.94  E-value=1.1e-08  Score=70.55  Aligned_cols=95  Identities=20%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CC-CCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             9987899827789713389999999999862998899997589987-55-566889999999986310475321342553
Q gi|254780649|r   17 EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV-KN-YNLSSSLEKRISLSQSLIKNPRIRITAFEA   94 (216)
Q Consensus        17 ~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~-K~-~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~   94 (216)
T Consensus         1 ~~gkkiv~~~G~FDl~H~GHi~~l~~Ak~~g--d~LiVgv~sD~~i~k~k~~Pi~~~~eR~~il~sl~~VD~Vii~~~~-   77 (143)
T cd02172           1 AEGKKVVLTHGCFDLLHAGHVRHLLAARSLG--DILVVGLTSDRSVLKGPGRPIFPEDLRAEVLAALECVDYVVLFDEP-   77 (143)
T ss_pred             CCCCEEEEECCEECCCCHHHHHHHHHHHHCC--CEEEEEEECCHHHHCCCCCCEECHHHHHHHHHCCCCCCEEEECCCC-
T ss_conf             9889899992733778999999999999749--9899999689889668998744599999998453766689978999-


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf             1000328999999720136784389616881
Q gi|254780649|r   95 YLNHTETFHTILQVKKHNKSVNFVWIMGADN  125 (216)
Q Consensus        95 ~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~  125 (216)
T Consensus        78 -----~~~~~---i~~~kpd---i~v~G~Dy   97 (143)
T cd02172          78 -----TAEEL---IDALQPD---IYVKGGDY   97 (143)
T ss_pred             -----CHHHH---HHHHCCE---EEEECCCC
T ss_conf             -----97899---9871986---99989864