HHsearch alignment for GI: 254780649 and conserved domain: cd02172
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.94 E-value=1.1e-08 Score=70.55 Aligned_cols=95 Identities=20% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CC-CCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9987899827789713389999999999862998899997589987-55-566889999999986310475321342553
Q gi|254780649|r 17 EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV-KN-YNLSSSLEKRISLSQSLIKNPRIRITAFEA 94 (216)
Q Consensus 17 ~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~-K~-~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~ 94 (216)
T Consensus 1 ~~gkkiv~~~G~FDl~H~GHi~~l~~Ak~~g--d~LiVgv~sD~~i~k~k~~Pi~~~~eR~~il~sl~~VD~Vii~~~~- 77 (143)
T cd02172 1 AEGKKVVLTHGCFDLLHAGHVRHLLAARSLG--DILVVGLTSDRSVLKGPGRPIFPEDLRAEVLAALECVDYVVLFDEP- 77 (143)
T ss_pred CCCCEEEEECCEECCCCHHHHHHHHHHHHCC--CEEEEEEECCHHHHCCCCCCEECHHHHHHHHHCCCCCCEEEECCCC-
T ss_conf 9889899992733778999999999999749--9899999689889668998744599999998453766689978999-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 1000328999999720136784389616881
Q gi|254780649|r 95 YLNHTETFHTILQVKKHNKSVNFVWIMGADN 125 (216)
Q Consensus 95 ~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~ 125 (216)
T Consensus 78 -----~~~~~---i~~~kpd---i~v~G~Dy 97 (143)
T cd02172 78 -----TAEEL---IDALQPD---IYVKGGDY 97 (143)
T ss_pred -----CHHHH---HHHHCCE---EEEECCCC
T ss_conf -----97899---9871986---99989864