Query gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 216 No_of_seqs 115 out of 1961 Neff 7.7 Searched_HMMs 23785 Date Tue May 31 19:59:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780649.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1yum_A 'probable nicotinate-nu 100.0 0 0 332.5 15.8 192 19-215 22-216 (242) 2 2h29_A Probable nicotinate-nuc 100.0 0 0 300.8 13.5 168 21-214 3-172 (189) 3 1kqn_A Nmnat, nicotinamide mon 100.0 0 0 299.9 12.1 185 15-215 3-240 (279) 4 1nup_A FKSG76; NAD biosynthesi 100.0 1.4E-45 0 283.4 12.5 179 21-214 7-218 (252) 5 3h05_A Uncharacterized protein 100.0 1.9E-41 1.4E-45 258.1 10.1 147 20-214 2-155 (177) 6 1k4m_A NAMN adenylyltransferas 100.0 2.7E-37 1.1E-41 234.2 16.7 191 22-215 5-198 (213) 7 1kam_A Deamido-NAD(+), nicotin 100.0 1.4E-35 6.1E-40 224.2 15.5 174 13-214 2-177 (194) 8 2qtr_A Nicotinate (nicotinamid 100.0 4.9E-34 2.1E-38 215.4 13.8 168 21-214 3-172 (189) 9 3nbk_A Phosphopantetheine aden 99.9 1.8E-26 7.7E-31 171.7 12.0 149 13-214 14-163 (177) 10 2qjo_A Bifunctional NMN adenyl 99.9 6.1E-23 2.6E-27 151.4 13.9 66 16-84 3-69 (341) 11 1ej2_A Nicotinamide mononucleo 99.9 5.6E-23 2.3E-27 151.6 12.5 142 22-214 5-148 (181) 12 1od6_A PPAT, phosphopantethein 99.9 2.4E-22 1E-26 148.0 13.6 143 20-214 1-145 (160) 13 1vlh_A Phosphopantetheine aden 99.9 2.9E-24 1.2E-28 159.0 3.0 146 16-214 9-155 (173) 14 1f9a_A Hypothetical protein MJ 99.9 7.5E-23 3.1E-27 150.9 9.6 140 20-214 1-142 (168) 15 3k9w_A Phosphopantetheine aden 99.9 5E-22 2.1E-26 146.2 13.4 143 17-214 2-148 (170) 16 1qjc_A Phosphopantetheine aden 99.9 7.7E-23 3.3E-27 150.8 9.0 142 20-214 1-144 (158) 17 3f3m_A Phosphopantetheine aden 99.9 2E-22 8.5E-27 148.4 11.1 142 20-214 3-146 (168) 18 1o6b_A Phosphopantetheine aden 99.9 3.4E-21 1.4E-25 141.3 12.6 59 20-83 2-60 (169) 19 3do8_A Phosphopantetheine aden 99.7 2.2E-19 9.1E-24 130.9 1.7 114 20-144 1-115 (148) 20 1lw7_A Transcriptional regulat 99.7 3.8E-18 1.6E-22 123.7 1.4 63 20-84 2-71 (365) 21 2qjt_B Nicotinamide-nucleotide 99.6 1.2E-15 5.2E-20 109.3 8.3 60 20-83 6-68 (352) 22 3gmi_A UPF0348 protein MJ0951; 99.5 4.9E-13 2.1E-17 94.3 13.4 182 19-214 51-247 (357) 23 2b7l_A Glycerol-3-phosphate cy 99.5 1.1E-13 4.6E-18 98.0 7.1 93 20-125 1-95 (132) 24 1coz_A Protein (glycerol-3-pho 99.4 9.8E-13 4.1E-17 92.5 7.1 93 20-125 1-95 (129) 25 3glv_A Lipopolysaccharide core 99.3 4.2E-12 1.8E-16 88.9 6.3 93 19-125 1-95 (143) 26 3elb_A Ethanolamine-phosphate 98.9 3.4E-09 1.4E-13 72.1 8.3 65 15-81 193-263 (341) 27 3hl4_A Choline-phosphate cytid 98.9 2.9E-09 1.2E-13 72.5 7.1 130 7-149 64-196 (236) 28 3elb_A Ethanolamine-phosphate 98.9 5.9E-09 2.5E-13 70.7 7.6 119 16-149 4-125 (341) 29 2x0k_A Riboflavin biosynthesis 98.5 1.5E-06 6.4E-11 56.8 12.0 113 12-128 9-129 (338) 30 1mrz_A Riboflavin kinase/FMN a 98.3 1.1E-05 4.4E-10 52.0 10.8 58 22-82 3-67 (293) 31 3op1_A Macrolide-efflux protei 98.1 1.1E-05 4.6E-10 51.9 7.4 99 19-125 21-132 (308) 32 1jhd_A Sulfate adenylyltransfe 97.8 0.00016 6.9E-09 45.1 9.6 163 21-211 194-374 (396) 33 1v47_A ATP sulfurylase; produc 97.7 0.00022 9.3E-09 44.4 8.7 163 21-211 157-332 (349) 34 1r6x_A ATP:sulfate adenylyltra 97.6 0.001 4.4E-08 40.5 11.5 156 24-211 191-370 (395) 35 1m8p_A Sulfate adenylyltransfe 97.4 0.0039 1.7E-07 37.1 12.1 162 21-211 192-372 (573) 36 2gks_A Bifunctional SAT/APS ki 97.4 0.00091 3.8E-08 40.8 8.4 163 21-211 165-348 (546) 37 1g8f_A Sulfate adenylyltransfe 97.4 0.003 1.3E-07 37.8 11.0 154 27-211 195-371 (511) 38 1x6v_B Bifunctional 3'-phospho 97.3 0.0054 2.3E-07 36.4 11.5 159 21-211 414-601 (630) 39 3cr8_A Sulfate adenylyltranfer 97.0 0.0099 4.2E-07 34.8 10.3 93 26-126 169-268 (552) 40 2x6q_A Trehalose-synthase TRET 84.1 2.1 8.8E-05 21.4 5.7 100 49-149 193-323 (416) 41 3k5i_A Phosphoribosyl-aminoimi 70.8 5.4 0.00023 19.1 4.6 45 8-59 13-58 (403) 42 2z04_A Phosphoribosylaminoimid 69.9 3 0.00013 20.5 3.1 37 20-63 2-39 (365) 43 3da8_A Probable 5'-phosphoribo 67.0 6.5 0.00027 18.6 7.0 99 8-128 2-103 (215) 44 2ejc_A Pantoate--beta-alanine 62.5 7.9 0.00033 18.1 4.8 60 18-81 20-85 (280) 45 3l4e_A Uncharacterized peptida 60.1 4.6 0.00019 19.5 2.5 99 20-135 2-100 (206) 46 1y42_X Tyrosyl-tRNA synthetase 59.3 8.4 0.00035 18.0 3.7 33 21-55 64-102 (392) 47 1jil_A Tyrrs, tyrosyl-tRNA syn 58.2 6 0.00025 18.8 2.8 34 21-55 32-70 (420) 48 1iho_A Pantoate--beta-alanine 58.1 9.5 0.0004 17.6 3.8 60 18-81 20-85 (283) 49 1h3f_A Tyrosyl-tRNA synthetase 57.7 9.1 0.00038 17.7 3.7 40 19-59 35-79 (432) 50 2w48_A Sorbitol operon regulat 54.7 9 0.00038 17.8 3.2 31 28-58 54-84 (315) 51 3guz_A Pantothenate synthetase 53.9 11 0.00047 17.2 3.7 60 18-81 20-85 (176) 52 2a33_A Hypothetical protein; s 53.7 11 0.00048 17.2 4.0 30 18-47 12-41 (215) 53 3ag6_A Pantothenate synthetase 52.0 11 0.00047 17.3 3.3 59 19-81 22-86 (283) 54 3mxt_A Pantothenate synthetase 50.9 8.7 0.00037 17.9 2.7 59 18-81 23-87 (285) 55 1t35_A Hypothetical protein YV 49.1 11 0.00046 17.3 3.0 28 21-48 3-30 (191) 56 1luc_A Bacterial luciferase; m 48.2 14 0.00058 16.7 4.0 35 20-54 1-41 (355) 57 3gjz_A Microcin immunity prote 48.0 14 0.00059 16.7 6.0 76 9-87 2-80 (336) 58 2o0m_A Transcriptional regulat 46.3 11 0.00046 17.3 2.6 32 28-59 86-117 (345) 59 3efb_A Probable SOR-operon reg 45.4 10 0.00044 17.4 2.4 33 28-60 5-37 (266) 60 1v8f_A Pantoate-beta-alanine l 43.7 16 0.00069 16.3 6.3 57 21-81 18-80 (276) 61 3n8h_A Pantothenate synthetase 43.1 17 0.0007 16.2 4.6 61 17-81 21-87 (264) 62 1fx0_B ATP synthase beta chain 42.9 8.1 0.00034 18.0 1.5 44 12-59 158-204 (498) 63 2qe7_A ATP synthase subunit al 40.9 7.2 0.0003 18.3 1.0 45 11-59 154-200 (502) 64 2jan_A Tyrosyl-tRNA synthetase 40.9 11 0.00044 17.4 1.8 33 21-55 32-70 (432) 65 2pid_A Tyrosyl-tRNA synthetase 39.6 15 0.00061 16.6 2.4 37 19-56 44-85 (356) 66 1sky_E F1-ATPase, F1-ATP synth 39.3 8.7 0.00036 17.9 1.2 21 13-33 145-165 (473) 67 3cov_A Pantothenate synthetase 39.0 19 0.00082 15.8 3.5 60 19-81 32-97 (301) 68 1z69_A COG2141, coenzyme F420- 37.6 20 0.00086 15.7 4.8 33 20-54 1-33 (327) 69 1weh_A Conserved hypothetical 37.3 21 0.00087 15.7 3.5 29 20-48 1-30 (171) 70 1f07_A Coenzyme F420-dependent 37.2 21 0.00087 15.7 4.4 33 20-54 1-33 (321) 71 3fsl_A Aromatic-amino-acid ami 37.2 21 0.00087 15.7 3.8 39 50-91 174-212 (397) 72 3foc_A Tryptophanyl-tRNA synth 36.9 21 0.00088 15.7 3.3 38 18-57 88-132 (451) 73 2ts1_A Tyrosyl-tRNA synthetase 35.7 14 0.0006 16.6 1.8 33 21-55 30-68 (419) 74 1xiy_A Peroxiredoxin, pfaop; a 35.6 22 0.00093 15.5 3.9 40 18-57 42-88 (182) 75 2ck3_D ATP synthase beta chain 35.5 9.4 0.00039 17.7 0.9 43 13-59 147-192 (482) 76 3c1a_A Putative oxidoreductase 34.6 17 0.00074 16.1 2.1 28 11-41 2-30 (315) 77 2r5f_A Transcriptional regulat 33.9 23 0.00099 15.4 3.1 27 34-60 7-33 (264) 78 3inn_A Pantothenate synthetase 33.6 24 0.001 15.3 6.2 59 19-81 42-106 (314) 79 2i7g_A Monooxygenase, AGR_C_41 29.7 28 0.0012 15.0 5.0 38 17-54 19-68 (376) 80 1d2f_A MALY protein; aminotran 29.7 28 0.0012 15.0 3.1 37 50-89 163-199 (390) 81 2ck3_A ATP synthase alpha chai 29.4 12 0.00051 17.0 0.6 20 12-31 155-174 (510) 82 3kv1_A Transcriptional repress 28.9 29 0.0012 14.9 3.0 30 27-58 2-31 (267) 83 1fx0_A ATP synthase alpha chai 28.2 12 0.00053 17.0 0.5 33 11-47 155-187 (507) 84 3l6d_A Putative oxidoreductase 28.2 21 0.00088 15.7 1.6 31 11-46 1-31 (306) 85 1jay_A Coenzyme F420H2:NADP+ o 28.1 20 0.00084 15.8 1.5 29 20-54 1-29 (212) 86 1ydh_A AT5G11950; structural g 27.9 30 0.0013 14.8 3.9 31 18-48 8-38 (216) 87 3e8x_A Putative NAD-dependent 26.5 24 0.00099 15.4 1.7 40 6-55 12-51 (236) 88 1jfl_A Aspartate racemase; alp 25.7 16 0.00069 16.3 0.7 32 114-148 115-146 (228) 89 2cyb_A Tyrosyl-tRNA synthetase 25.6 33 0.0014 14.5 3.2 35 21-57 32-71 (323) 90 3ew7_A LMO0794 protein; Q8Y8U8 25.5 24 0.001 15.3 1.5 30 20-55 1-30 (221) 91 1kjq_A GART 2, phosphoribosylg 24.7 34 0.0014 14.4 5.0 48 11-64 3-50 (391) 92 2r9v_A ATP synthase subunit al 24.1 15 0.00062 16.5 0.2 44 12-59 168-213 (515) 93 2x5f_A Aspartate_tyrosine_phen 24.0 35 0.0015 14.3 4.6 32 48-82 188-219 (430) 94 1c7n_A Cystalysin; transferase 23.2 37 0.0015 14.3 3.8 35 50-87 165-199 (399) 95 2dpy_A FLII, flagellum-specifi 22.9 37 0.0016 14.2 4.9 45 12-60 150-194 (438) 96 3gqb_B V-type ATP synthase bet 22.6 15 0.00064 16.5 0.1 35 8-46 136-170 (464) 97 3fj2_A Monooxygenase-like prot 22.5 38 0.0016 14.2 2.5 27 101-127 29-55 (186) 98 2inb_A Hypothetical protein; Z 22.4 38 0.0016 14.2 3.7 59 89-149 70-130 (140) 99 3ez1_A Aminotransferase MOCR f 21.7 39 0.0017 14.1 3.2 32 51-85 175-206 (423) 100 1iir_A Glycosyltransferase GTF 20.9 41 0.0017 14.0 3.6 31 20-56 1-35 (415) 101 1bw0_A TAT, protein (tyrosine 20.7 41 0.0017 13.9 2.2 34 50-86 178-211 (416) No 1 >1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Probab=100.00 E-value=0 Score=332.50 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=165.0 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHHH Q ss_conf 8789982778971338999999999986299889999758998755566889999999986310-475321342553100 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYLN 97 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~~ 97 (216) +||||||||||||||.||+.+++.|.+.+++|+|||+|+++||+|+.. .+++++|++||++++ +.+++.|+++|.+.+ T Consensus 22 ~kkIgifgGSFdP~H~GHl~i~~~a~~~~~~d~V~~~p~~~n~~K~~~-~~~~~~Rl~m~~~a~~~~~~i~vs~~E~~~~ 100 (242) T 1yum_A 22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETP-QVSAAQRLAMVERAVAGVERLTVDPRELQRD 100 (242) T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGGGSCT-TCCHHHHHHHHHHHHTTCTTEEECCGGGGSS T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 986999675857150999999999999819998999983979887876-5588999999877765156058502433478 Q ss_pred -HHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHH Q ss_conf -032899999972013-678438961688135777776199999758989993899871432158999986325881233 Q gi|254780649|r 98 -HTETFHTILQVKKHN-KSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLS 175 (216) Q Consensus 98 -~syT~dtL~~lk~~~-p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (216) ++||+|||.++++++ |+.+++||||+|+|.+|++|++|++|++.++|+|++|+|+......+............. T Consensus 101 ~~~~t~dtL~~l~~~~~~~~~~~~iiG~D~l~~i~~W~~~~~il~~~~ilV~~R~~~~~~~~~~~~~~~~~~~~~~~--- 177 (242) T 1yum_A 101 KPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADP--- 177 (242) T ss_dssp SSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTGGGSTTGGGSTTTCEEEEEECSSSCCCCCGGGHHHHHHHBCSCG--- T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCH--- T ss_conf 87309999999876414675179974653064336776899996268589996898642005789999998731268--- Q ss_pred HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 4542058980999807468868899999998796851116 Q gi|254780649|r 176 HILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLG 215 (216) Q Consensus 176 ~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L~ 215 (216) .......+.|.+++.+.++||||+||+++++|+++++|- T Consensus 178 -~~~~~~~~~i~~~~~~~~dISST~IR~~i~~g~~i~~lv 216 (242) T 1yum_A 178 -QALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLV 216 (242) T ss_dssp -GGCCSSSCCEEEEECCCCSCCHHHHHHHHHTTCCCBTTB T ss_pred -HHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHC T ss_conf -887376885899689974416999999998599913708 No 2 >2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Probab=100.00 E-value=0 Score=300.77 Aligned_cols=168 Identities=23% Similarity=0.370 Sum_probs=152.7 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHH-H Q ss_conf 899827789713389999999999862998899997589987555668899999999863104-75321342553100-0 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITAFEAYLN-H 98 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~~E~~~~-~ 98 (216) |||||||||||||.||+.+++.|.+.+++|+|+|+|++.||+|.+...+++++|++||+++++ .+++.|+++|...+ . T Consensus 3 kI~lfgGsFdP~h~GH~~i~~~a~~~~~~d~v~~~~s~~~p~K~~~~~~s~~~R~~m~~~~~~~~~~~~v~~~e~~~~~~ 82 (189) T 2h29_A 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQ 82 (189) T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHHCSB T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHCCCCC T ss_conf 69996327683779999999999998099959999705787534335589999999997522211432010022205765 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH Q ss_conf 32899999972013678438961688135777776199999758989993899871432158999986325881233454 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216) +||++||.+++++||+.+++|+||+|++.+|++|++|++|++.++++|++|+++..+. T Consensus 83 ~~t~~tl~~l~~~~p~~~~~~i~G~D~~~~l~~w~~~e~l~~~~~~~v~~R~~~~~~~---------------------- 140 (189) T 2h29_A 83 SYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNV---------------------- 140 (189) T ss_dssp CCHHHHHHHHHHHSTTEEEEEEEEHHHHTTGGGSTTHHHHHHHCEEEEECCSSSCCCC---------------------- T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC---------------------- T ss_conf 3014788998876888546987156166565326269999964877776688754012---------------------- Q ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 205898099980746886889999999879685111 Q gi|254780649|r 179 CTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 179 ~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ...+.+++.+..+||||+||+++++|+++++| T Consensus 141 ----~~~~~~~~~~~~~ISST~IR~~i~~g~~i~~l 172 (189) T 2h29_A 141 ----ENAMIAIQIPRVDISSTMIRQRVSEGKSIQVL 172 (189) T ss_dssp ----CTTSEEECCCCBCCCHHHHHHHHHTTCCCBTT T ss_pred ----CCCCHHCCCCCCEECHHHHHHHHHCCCCCHHH T ss_conf ----34210025876646789999999849990252 No 3 >1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Probab=100.00 E-value=0 Score=299.94 Aligned_cols=185 Identities=18% Similarity=0.161 Sum_probs=148.4 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCC Q ss_conf 789987899827789713389999999999862------998899997589987555668899999999863104-7532 Q gi|254780649|r 15 KVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL------NLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRI 87 (216) Q Consensus 15 ~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l------~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i 87 (216) .+.+...|+||||||||||+||+.+|+.|++.+ .+++++++|++.+|+|+ ..++++||++||++|++ .+++ T Consensus 3 ~~~k~~~vll~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~l~~~~~~P~~~~~~K~--~~~s~~~Rl~Ml~lA~~~~~~~ 80 (279) T 1kqn_A 3 NSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKK--GLIPAYHRVIMAELATKNSKWV 80 (279) T ss_dssp ---CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCT--TCCCHHHHHHHHHHHTTTCSSE T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCE T ss_conf 86675489996245373429999999999999734256041579980589987688--8999999999999998446867 Q ss_pred CCCHHHHHHH-HHHHHHHHHHHHCCC----------------------------------------CCCCEEEECCCCCH Q ss_conf 1342553100-032899999972013----------------------------------------67843896168813 Q gi|254780649|r 88 RITAFEAYLN-HTETFHTILQVKKHN----------------------------------------KSVNFVWIMGADNI 126 (216) Q Consensus 88 ~v~~~E~~~~-~syT~dtL~~lk~~~----------------------------------------p~~~l~fiiG~D~l 126 (216) .|+++|..++ ++||++||+++++.| |+.+|+||||+|+| T Consensus 81 ~v~~~E~~~~~~syt~~tL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l 160 (279) T 1kqn_A 81 EVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLL 160 (279) T ss_dssp EECCTGGGCSSCCCHHHHHHHHHHHHTC--------------------------------------CCCEEEEEEEHHHH T ss_pred EECHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCHH T ss_conf 97216861788861899999999984212210012554223333223443222012110123345888418999862536 Q ss_pred HHHHHHHHH-----HHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHH Q ss_conf 577777619-----999975898999389987143215899998632588123345420589809998074688688999 Q gi|254780649|r 127 KSFHQWHHW-----KRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAI 201 (216) Q Consensus 127 ~~l~~W~~~-----~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~I 201 (216) .+|.+|+.| ++|++.++|+|++|+|+........ ...+.....+.+++.+.+.++||||+| T Consensus 161 ~~~~~~~~wk~~~~e~il~~~~liV~~R~g~~~~~~~~~--------------~~~l~~~~~~i~~i~~~~~~dISST~I 226 (279) T 1kqn_A 161 ESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYE--------------SDVLWKHRSNIHVVNEWIANDISSTKI 226 (279) T ss_dssp HHTTSTTTSCHHHHHHHHHHTCEEEEESCHHHHHHHHHT--------------CHHHHHTGGGEEEEECCSCCCCCHHHH T ss_pred HHCCCCCCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHH--------------HHHHHHCCCCEEEECCCCCCCCCHHHH T ss_conf 454244666521799997008589996899986874200--------------888864549879976888667189999 Q ss_pred HHHHHCCCCCCCCC Q ss_conf 99998796851116 Q gi|254780649|r 202 RKKIIEQDNTRTLG 215 (216) Q Consensus 202 R~~l~~~~~i~~L~ 215 (216) |++|++|+++++|- T Consensus 227 R~~l~~g~~i~~lv 240 (279) T 1kqn_A 227 RRALRRGQSIRYLV 240 (279) T ss_dssp HHHHHTTCCCBTTB T ss_pred HHHHHCCCCCHHHC T ss_conf 99998699932638 No 4 >1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Probab=100.00 E-value=1.4e-45 Score=283.35 Aligned_cols=179 Identities=20% Similarity=0.278 Sum_probs=145.8 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE----EECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHH Q ss_conf 8998277897133899999999998629988999----9758998755566889999999986310-4753213425531 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW----IITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAY 95 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~----ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~ 95 (216) .|+||||||||||.||+.+++.|.+.++++++++ ++++.++.|.+...+++++|++||++|+ +++++.|+++|.. T Consensus 7 ~vlv~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~~~~~k~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~ 86 (252) T 1nup_A 7 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESE 86 (252) T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHHH T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHH T ss_conf 79997055787589999999999998674665567777875888987678889999999999999860577242216664 Q ss_pred HH-HHHHHHHHHHHHCCC---------------------CCCCEEEECCCCCHHHHHHHHHH-----HHHHHHCCEEEEE Q ss_conf 00-032899999972013---------------------67843896168813577777619-----9999758989993 Q gi|254780649|r 96 LN-HTETFHTILQVKKHN---------------------KSVNFVWIMGADNIKSFHQWHHW-----KRIVTTVPIAIID 148 (216) Q Consensus 96 ~~-~syT~dtL~~lk~~~---------------------p~~~l~fiiG~D~l~~l~~W~~~-----~~ll~~~~iiV~~ 148 (216) ++ .+||++||.++++.| |+.+++||||+|+|.+|++|++| ++|++.++++|++ T Consensus 87 ~~~~s~Ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~l~~wk~~~~~~~e~il~~~~liv~~ 166 (252) T 1nup_A 87 QAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVG 166 (252) T ss_dssp SSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEEC T ss_pred CCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHCCEEEEC T ss_conf 37980299999999998243343212210011110146876527888563687655203642215699999859999976 Q ss_pred CCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE-ECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 89987143215899998632588123345420589809998-0746886889999999879685111 Q gi|254780649|r 149 RFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFI-HDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 149 R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) |+|+......... ..+.... ..++++ +....+||||+||+++++|+++++| T Consensus 167 R~~~~~~~~~~~~--------------~~~~~~~-~~i~~~~~~~~~~ISST~IR~~i~~g~~i~~l 218 (252) T 1nup_A 167 RVSHDPKGYIAES--------------PILRMHQ-HNIHLAKEPVQNEISATYIRRALGQGQSVKYL 218 (252) T ss_dssp CTTCCHHHHHHHC--------------HHHHHTG-GGEEEECCCSCCCCCHHHHHHHHHTTCCCBTT T ss_pred CCCCCHHHHHHHH--------------HHHHCCC-CCEEEECCCCCCCCCHHHHHHHHHCCCCCHHH T ss_conf 8986667777666--------------7764067-87899768875668799999999859993263 No 5 >3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus} Probab=100.00 E-value=1.9e-41 Score=258.11 Aligned_cols=147 Identities=21% Similarity=0.311 Sum_probs=129.9 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC---CCCCCCCHHHHHH Q ss_conf 7899827789713389999999999862998899997589987555668899999999863104---7532134255310 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK---NPRIRITAFEAYL 96 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~---~~~i~v~~~E~~~ 96 (216) .|||||||||||||+||+.+++.+. .+|+|+++|++.||.|+ ..+++++|++||+++++ .+++.++++|... T Consensus 2 kkI~ifgGsFdP~h~GHl~i~~~~~---~~d~viv~p~~~~~~k~--~~~~~~~R~~m~~~a~~~~~~~~v~v~~~e~~~ 76 (177) T 3h05_A 2 KKIAIFGSAFNPPSLGHKSVIESLS---HFDLVLLEPSIAHAWGK--NMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQAL 76 (177) T ss_dssp CEEEEEEECCSSCCHHHHHHHTTCT---TSSEEEEEECC---------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHH T ss_pred CEEEEECCCCCHHHHHHHHHHHHHH---HCCEEEEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHC T ss_conf 5799966545541299999999997---26969998202576567--878999999999999987312682675444322 Q ss_pred H-HH---HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCH Q ss_conf 0-03---2899999972013678438961688135777776199999758989993899871432158999986325881 Q gi|254780649|r 97 N-HT---ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDE 172 (216) Q Consensus 97 ~-~s---yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~ 172 (216) . ++ +|+++|+++++.||+.+|+|+||+|++.+|++|++|++|++.+.++|++|. T Consensus 77 ~~~~~s~~t~~~l~~l~~~~~~~~~~~iiG~D~~~~~~~W~~~~~i~~~~~~~~~pr~---------------------- 134 (177) T 3h05_A 77 YQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERWTVMACPEK---------------------- 134 (177) T ss_dssp C----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHHSEEEECCCS---------------------- T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCHHHHHHHCCEEEECCC---------------------- T ss_conf 6553312378999988741885031776324067674764278999850867984587---------------------- Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 233454205898099980746886889999999879685111 Q gi|254780649|r 173 SLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) .+||||+||++++.|+++++| T Consensus 135 ---------------------~~ISST~IR~~l~~g~~i~~~ 155 (177) T 3h05_A 135 ---------------------VKIRSTDIRNALIEGKDISTY 155 (177) T ss_dssp ---------------------SCCCHHHHHHHHHHTCCCTTT T ss_pred ---------------------CCCCHHHHHHHHHCCCCHHHH T ss_conf ---------------------784999999999859994697 No 6 >1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Probab=100.00 E-value=2.7e-37 Score=234.24 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=152.2 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCHHHHHHHH-H Q ss_conf 998277897133899999999998629988999975899875556688999999998631-04753213425531000-3 Q gi|254780649|r 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL-IKNPRIRITAFEAYLNH-T 99 (216) Q Consensus 22 IgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~-~~~~~i~v~~~E~~~~~-s 99 (216) +|||||||||||+||+.|++.|++.+++|+|+++|++.++.|... .....+|..|+..+ .....+.++..|..... . T Consensus 5 ~ai~gGSFNP~h~gHl~~~~~a~~~~~~d~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213) T 1k4m_A 5 QALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQP-EANSVQRKHMLELAIADKPLFTLDERELKRNAPS 83 (213) T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSCCC-SSCHHHHHHHHHHHHTTCTTEEECCHHHHCSSCC T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEHHCCCCCC T ss_conf 799705608264999999999999809999999994888533455-6209999999866664234420110001146775 Q ss_pred HHHH-HHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH Q ss_conf 2899-999972013678438961688135777776199999758989993899871432158999986325881233454 Q gi|254780649|r 100 ETFH-TILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 (216) Q Consensus 100 yT~d-tL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216) ++.. +....+..+|+..++|++|+|++..+.+|+.|++++..++|+|+.|+|+................... ....+ T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 161 (213) T 1k4m_A 84 YTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTH--NPEDL 161 (213) T ss_dssp CHHHHHHHHHHHHCTTSCEEEEEEHHHHHHGGGSTTHHHHHHHCEEEEECCTTCCSSCSSHHHHHHHHHHBCS--CTTHH T ss_pred CEEEHHHHHHHHCCCCCEEEECCCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH--HHHHH T ss_conf 1000166666312777448841573001001015539998378739999379963666789999999863000--02343 Q ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 2058980999807468868899999998796851116 Q gi|254780649|r 179 CTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLG 215 (216) Q Consensus 179 ~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L~ 215 (216) .....+.+++.+.+..+||||+||+++++|+++++|. T Consensus 162 ~~~~~~~~~~~~~~~~~ISST~IR~~l~~~~~i~~lv 198 (213) T 1k4m_A 162 HLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLL 198 (213) T ss_dssp HHSSSCCEEEECCCCCCCCHHHHHHHHHTTCCCTTTS T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCHHHC T ss_conf 1277864999269878709999999998499921508 No 7 >1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Probab=100.00 E-value=1.4e-35 Score=224.24 Aligned_cols=174 Identities=26% Similarity=0.462 Sum_probs=150.0 Q ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCH Q ss_conf 6778998789982778971338999999999986299889999758998755566889999999986310-475321342 Q gi|254780649|r 13 MPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITA 91 (216) Q Consensus 13 ~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~ 91 (216) || +.+.|||||||||||||+||+.|++.|++.+++++|++++++.++.+.........+|..|+.+.. +...+.+++ T Consensus 2 ~~--~~~kkIaifgGSFdP~H~GH~~ii~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (194) T 1kam_A 2 MP--GGSKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLEL 79 (194) T ss_dssp ------CCEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC---------CHHHHHHHHHHHHTTCTTEEECC T ss_pred CC--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 78--9997799956475848799999999999985997899996356663334205799999998766422776420004 Q ss_pred HHHHH-HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCC Q ss_conf 55310-00328999999720136784389616881357777761999997589899938998714321589999863258 Q gi|254780649|r 92 FEAYL-NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARL 170 (216) Q Consensus 92 ~E~~~-~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~ 170 (216) +|... +++||++++.++++.+|...+.+++|+|.+..+.+|..|++++..+.++|+.|++..... T Consensus 80 ~e~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 145 (194) T 1kam_A 80 VEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVET-------------- 145 (194) T ss_dssp GGGSTTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCCC-------------- T ss_pred HHHHCCCCEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------- T ss_conf 787646863645567789986488640000116678887624049999997157754375433000-------------- Q ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 81233454205898099980746886889999999879685111 Q gi|254780649|r 171 DESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) .....+.+....+||||+||+++++|+++++| T Consensus 146 ------------~~~~~~~~~~~~~ISST~IR~~i~~~~~~~~~ 177 (194) T 1kam_A 146 ------------PYPLLFADVPEFEVSSTMIRERFKSKKPTDYL 177 (194) T ss_dssp ------------SSCCEEEECCCBCCCHHHHHHHHHHTCCCTTT T ss_pred ------------CCCEEECCCCCCCCCHHHHHHHHHCCCCCHHH T ss_conf ------------10100145655656679999999839990374 No 8 >2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Probab=100.00 E-value=4.9e-34 Score=215.40 Aligned_cols=168 Identities=25% Similarity=0.438 Sum_probs=144.3 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHH-HH Q ss_conf 899827789713389999999999862998899997589987555668899999999863104-7532134255310-00 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITAFEAYL-NH 98 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~~E~~~-~~ 98 (216) |||||||||||||+||+.|++.|++.+++++|+++|++.++.+..........|..++..... .....++.++... ++ T Consensus 3 ki~if~GsFdP~h~GHl~i~~~a~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189) T 2qtr_A 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGP 82 (189) T ss_dssp EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGSCSC T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCC T ss_conf 69996647671749999999999998499989999624566332211558999999998765045530220023323687 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH Q ss_conf 32899999972013678438961688135777776199999758989993899871432158999986325881233454 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216) +||++|+.++++.+|+..++|++|+|.+..+..|+++++++..+++.+.+|++..... T Consensus 83 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 140 (189) T 2qtr_A 83 SYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRT---------------------- 140 (189) T ss_dssp CCHHHHHHHHHHHCTTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCTTCCCCC---------------------- T ss_pred EEEHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC---------------------- T ss_conf 0217889999987777550322020577788799999999864341000375422123---------------------- Q ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 205898099980746886889999999879685111 Q gi|254780649|r 179 CTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 179 ~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) .....+.+....+||||+||+++++|+++++| T Consensus 141 ----~~~~~~~~~~~~~ISST~IR~~~~~~~~~~~~ 172 (189) T 2qtr_A 141 ----PYPITTVEIPEFAVSSSLLRERYKEKKTCKYL 172 (189) T ss_dssp ----SSCCEEECCCCCCCCHHHHHHHHHTTCCCTTT T ss_pred ----CCCEEECCCCCCCCCHHHHHHHHHCCCCCHHH T ss_conf ----32035404666740799999999839990250 No 9 >3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A Probab=99.94 E-value=1.8e-26 Score=171.72 Aligned_cols=149 Identities=13% Similarity=0.044 Sum_probs=103.0 Q ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCH Q ss_conf 677899878998277897133899999999998629988999975899875556688999999998631047-5321342 Q gi|254780649|r 13 MPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN-PRIRITA 91 (216) Q Consensus 13 ~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~-~~i~v~~ 91 (216) |=+-+.-||||||||||||||+||+.+|+.|++.+ |+||++|+..+++|.... ..+.+..+...+... ....... T Consensus 14 ~~~~~~~mriai~~GsFdPiH~GHl~i~~~a~~~~--D~viv~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (177) T 3nbk_A 14 LVPRGSHMTGAVCPGSFDPVTLGHVDIFERAAAQF--DEVVVAILVNPAKTGMFD--LDERIAMVKESTTHLPNLRVQVG 89 (177) T ss_dssp ------CCCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCTTSCCSSC--HHHHHHHHHHHCTTCTTEEEEEC T ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEEECCCCCCCCCCC--HHHHHHHHHHHHHHCCCCCCCCC T ss_conf 55589986699968677988789999999999869--989998345787666557--99999999876540245422333 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCC Q ss_conf 55310003289999997201367843896168813577777619999975898999389987143215899998632588 Q gi|254780649|r 92 FEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLD 171 (216) Q Consensus 92 ~E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~ 171 (216) .....+.. ...........++.+.|....+..|+..+++.+...+++..|++ T Consensus 90 ------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~-------------------- 141 (177) T 3nbk_A 90 ------HGLVVDFV--RSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPR-------------------- 141 (177) T ss_dssp ------CSCHHHHH--HHTTCCEEEEEECTTCCHHHHHHHHHHHHHHHCCEEEEEECCGG-------------------- T ss_pred ------CCHHHHHH--HHCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-------------------- T ss_conf ------21025566--53487087521021411554626999999728977799965887-------------------- Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 1233454205898099980746886889999999879685111 Q gi|254780649|r 172 ESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ..+||||+||+++++|++|++| T Consensus 142 ---------------------~~~ISST~IRe~i~~g~~i~~l 163 (177) T 3nbk_A 142 ---------------------YSFVSSSLAKEVAMLGGDVSEL 163 (177) T ss_dssp ---------------------GSSCCHHHHHHHHHTTCCCGGG T ss_pred ---------------------CCCCCHHHHHHHHHCCCCHHHH T ss_conf ---------------------7753359999999849986795 No 10 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Probab=99.90 E-value=6.1e-23 Score=151.40 Aligned_cols=66 Identities=18% Similarity=0.376 Sum_probs=52.9 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 89987899827789713389999999999862998899997-5899875556688999999998631047 Q gi|254780649|r 16 VEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWII-TPFNSVKNYNLSSSLEKRISLSQSLIKN 84 (216) Q Consensus 16 ~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ip-s~~~p~K~~~~~~~~~~R~~m~~~~~~~ 84 (216) .+..++||||||||||+|+||+.+++.|.+++ |+|++++ +..++++. ....++++|++|++.++.+ T Consensus 3 ~~~~~~igl~~GtFdP~H~GHl~li~~a~~~~--d~viV~v~s~~~~~~~-~npfs~~eR~~Mi~~a~~~ 69 (341) T 2qjo_A 3 MQTKYQYGIYIGRFQPFHLGHLRTLNLALEKA--EQVIIILGSHRVAADT-RNPWRSPERMAMIEACLSP 69 (341) T ss_dssp CSSSEEEEEEEECCTTCCHHHHHHHHHHHHHE--EEEEEEEEEETCCCCS-SSCSCHHHHHHHHHTTSCH T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEECCCCCCCCC-CCCCCHHHHHHHHHHHHHH T ss_conf 77721389998664877789999999999779--9899998168668888-8998999999999998777 No 11 >1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Probab=99.90 E-value=5.6e-23 Score=151.64 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=99.4 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHH-HH Q ss_conf 99827789713389999999999862998899997589987555668899999999863104-75321342553100-03 Q gi|254780649|r 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITAFEAYLN-HT 99 (216) Q Consensus 22 IgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~~E~~~~-~s 99 (216) +|||||||||+|+||+.+++.|.+.+ |+++++++..++++.+....++++|.+|++.++. .....+..++.... .. T Consensus 5 ~gl~~G~FdP~H~GH~~l~~~a~~~~--~~v~v~i~~~~~~~~~~~~~~~~~r~~~i~~~l~~~~~~~~~~~~~~~~~~~ 82 (181) T 1ej2_A 5 RGLLVGRMQPFHRGHLQVIKSILEEV--DELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIE 82 (181) T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCS T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH T ss_conf 99998646989999999999999977--9988998336667775544309999999998676548863545650565224 Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHH Q ss_conf 28999999720136784389616881357777761999997589899938998714321589999863258812334542 Q gi|254780649|r 100 ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILC 179 (216) Q Consensus 100 yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (216) ++..+...++..++...+++ .| |..+.++.+..++-+...+. T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~---------------------------- 124 (181) T 1ej2_A 83 CNALWVGHIKMLTPPFDRVY-SG---------NPLVQRLFSEDGYEVTAPPL---------------------------- 124 (181) T ss_dssp CHHHHHHHHHHHSCCCSEEE-CC---------CHHHHHHHHHTTCCEECCCC---------------------------- T ss_pred HHHHHHHHHHHHCCCEEEEE-CC---------HHHHHHHHHHCCCEEEECCC---------------------------- T ss_conf 67889999987435326998-65---------69999988706984773364---------------------------- Q ss_pred HCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 05898099980746886889999999879685111 Q gi|254780649|r 180 TTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 180 ~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) .....||||+||++|.+|+++++| T Consensus 125 -----------~~~~~ISST~IR~~i~~g~~~~~l 148 (181) T 1ej2_A 125 -----------FYRDRYSGTEVRRRMLDDGDWRSL 148 (181) T ss_dssp -----------SSTTTSSHHHHHHHHHHTCCCGGG T ss_pred -----------CCCCCCCHHHHHHHHHCCCCHHHH T ss_conf -----------234667769999999859984797 No 12 >1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Probab=99.89 E-value=2.4e-22 Score=147.96 Aligned_cols=143 Identities=16% Similarity=0.222 Sum_probs=85.5 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCHHHHHHHH Q ss_conf 78998277897133899999999998629988999975899875556688999999998631-04753213425531000 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL-IKNPRIRITAFEAYLNH 98 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~-~~~~~i~v~~~E~~~~~ 98 (216) ||| ||||||||+|+||+.+++.|.+.+ |+|+++|+..++.|.. ...+..+|..++..+ .......+..+|..... T Consensus 1 M~i-ifgGsFdP~H~GHl~ii~~a~~~~--d~v~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (160) T 1od6_A 1 MHV-VYPGSFDPLTNGHLDVIQRASRLF--EKVTVAVLENPSKRGQ-YLFSAEERLAIIREATAHLANVEAATFSGLLVD 76 (160) T ss_dssp CEE-EEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECC-----C-CSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHH T ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHC--CEEEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 969-950257976899999999999879--9999952677775566-653689999999987753023333441001232 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH Q ss_conf 32899999972013678438961688135777776199999758989993899871432158999986325881233454 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216) ..+. .+.........+.+.......|..+......- T Consensus 77 ---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 112 (160) T 1od6_A 77 ---FVRR-----VGAQAIVKGLRAVSDYEYELQMAHLNRQLYPG------------------------------------ 112 (160) T ss_dssp ---HHHH-----TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTT------------------------------------ T ss_pred ---CCEE-----CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC------------------------------------ T ss_conf ---1000-----14157886246779998750199999985789------------------------------------ Q ss_pred HHCCCCEE-EEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 20589809-9980746886889999999879685111 Q gi|254780649|r 179 CTTSPPSW-LFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 179 ~~~~~~~~-~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ...+ .+.+....+||||.||+++++|+|+++| T Consensus 113 ----~~~i~~~~~~~~~~ISST~IRe~i~~g~~i~~l 145 (160) T 1od6_A 113 ----LETLFILAATRYSFVSSTMVKEIARYGGDVSKL 145 (160) T ss_dssp ----CEEEEEECCGGGTTCCHHHHHHHHHTTCCCTTT T ss_pred ----CCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHH T ss_conf ----888986458887753679999999849993586 No 13 >1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural genomics, JCSG, protein structure initiative, PSI; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Probab=99.89 E-value=2.9e-24 Score=159.02 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=85.1 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHH Q ss_conf 89987899827789713389999999999862998899997589987555668899999999863104-75321342553 Q gi|254780649|r 16 VEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITAFEA 94 (216) Q Consensus 16 ~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~~E~ 94 (216) .-..|| |||||||||||+||+.+|+.|.+.+ |+|+++|+..++.+ ...+..+|.+|++.... ...+.....+. T Consensus 9 ~~~~Mk-aifgGsFdPiH~GHl~i~~~a~~~~--D~viv~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (173) T 1vlh_A 9 HHHHMK-AVYPGSFDPITLGHVDIIKRALSIF--DELVVLVTENPRKK---CMFTLEERKKLIEEVLSDLDGVKVDVHHG 82 (173) T ss_dssp ----CE-EEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEECCTTCC---CSSCHHHHHHHHHHHTTTCTTEEEEEECS T ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEECCCCCCC---CCCCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 446426-9962347877799999999999869--99999503555678---77878899999986310221011001112 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHH Q ss_conf 10003289999997201367843896168813577777619999975898999389987143215899998632588123 Q gi|254780649|r 95 YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESL 174 (216) Q Consensus 95 ~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (216) ... .+.+. .. ... .....+ .|..+........+....|++.. T Consensus 83 ~~~-~~~~~----~~----~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~e--------------------- 124 (173) T 1vlh_A 83 LLV-DYLKK----HG----IKV--LVRGLR------AVTDYEYELQMALANKKLYSDLE--------------------- 124 (173) T ss_dssp CHH-HHHHH----HT----CCE--EEEEEC------TTSCHHHHHHHHHHHHHHSTTCE--------------------- T ss_pred CCH-HHHHH----HC----HHH--EEEECC------CCHHHHHHHHHHHHHHHHCCCCC--------------------- T ss_conf 101-47764----04----555--155136------73047888779999998679996--------------------- Q ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 3454205898099980746886889999999879685111 Q gi|254780649|r 175 SHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ..+.+.+....+||||+||+++++|+++++| T Consensus 125 ---------~i~l~~~~~~~~ISST~IR~~i~~g~~i~~l 155 (173) T 1vlh_A 125 ---------TVFLIASEKFSFISSSLVKEVALYGGDVTEW 155 (173) T ss_dssp ---------EEEEECCGGGTTCCHHHHHHHHHTTCCCTTT T ss_pred ---------EEEECCCCCCCEECHHHHHHHHHCCCCHHHH T ss_conf ---------7730057676404599999999849995684 No 14 >1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Probab=99.88 E-value=7.5e-23 Score=150.91 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=91.1 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCHHHHHHHH Q ss_conf 789982778971338999999999986299889999758998755566889999999986310475-3213425531000 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNP-RIRITAFEAYLNH 98 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~-~i~v~~~E~~~~~ 98 (216) || |+|||||||+|+||+.+++.|.+.+ |+|+++++..++.+.+....++++|.+|++.++.+. ...+...+... T Consensus 1 Mk-gi~~GsFdP~H~GH~~li~~a~~~~--d~v~v~~~~~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~-- 75 (168) T 1f9a_A 1 LR-GFIIGRFQPFHKGHLEVIKKIAEEV--DEIIIGIGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDI-- 75 (168) T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCC-- T ss_pred CE-EEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-- T ss_conf 96-8995245989999999999999978--974898047860136788889999999999998767960898404664-- Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHH Q ss_conf 328999999720136784389616881-3577777619999975898999389987143215899998632588123345 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADN-IKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHI 177 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~-l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (216) .+...+..++++..++..+.+ |.|. ...+..|. ++-|..-+ T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~v~~~~--------------------------- 117 (168) T 1f9a_A 76 EFNSIWVSYVESLTPPFDIVY--SGNPLVRVLFEER---------GYEVKRPE--------------------------- 117 (168) T ss_dssp SCGGGHHHHHHHHSCCCSEEE--CCCHHHHHHHHHT---------TCEEECCC--------------------------- T ss_pred CHHHHHHHHHHHHCCCEEEEE--CCCHHHHHHHHCC---------CCEEEEEC--------------------------- T ss_conf 207789999987258679998--7709999887648---------98699832--------------------------- Q ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 4205898099980746886889999999879685111 Q gi|254780649|r 178 LCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 178 ~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ......||||+||+++++|++++++ T Consensus 118 ------------~~~~~~ISST~IR~~i~~g~~~~~~ 142 (168) T 1f9a_A 118 ------------MFNRKEYSGTEIRRRMLNGEKWEHL 142 (168) T ss_dssp ------------CCSTTTSSHHHHHHHHHHTCCCGGG T ss_pred ------------CCCCCCCCHHHHHHHHHCCCCHHHH T ss_conf ------------4466676679999999859986795 No 15 >3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A* Probab=99.88 E-value=5e-22 Score=146.16 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=83.3 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCCCCCCCCHHHHH Q ss_conf 998789982778971338999999999986299889999758998755566889999999986-3104753213425531 Q gi|254780649|r 17 EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ-SLIKNPRIRITAFEAY 95 (216) Q Consensus 17 ~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~-~~~~~~~i~v~~~E~~ 95 (216) +..||||||||||||||+||+.+++.|.+.+ |+|++++++.++.+... ..+.+..+.. .+.....+.+...+.. T Consensus 2 ~~~M~IaifgGsFdP~H~GHl~ii~~a~~~~--D~v~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~ 76 (170) T 3k9w_A 2 PGSMVVAVYPGTFDPLTRGHEDLVRRASSIF--DTLVVGVADSRAKKPFF---SLEERLKIANEVLGHYPNVKVMGFTGL 76 (170) T ss_dssp -CCCCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECCGGGCCSS---CHHHHHHHHHHHHTTCTTEEEEEESSC T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCC---CHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 9873899958567988899999999999978--93427245554432235---699999999876520234443200344 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC---CEEEEECCCCCHHHHCCHHHHHHHHCCCCH Q ss_conf 00032899999972013678438961688135777776199999758---989993899871432158999986325881 Q gi|254780649|r 96 LNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTV---PIAIIDRFDVTFNYISSPMAKTFEYARLDE 172 (216) Q Consensus 96 ~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~---~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~ 172 (216) .... .............+.+.......+..+....... .+++. T Consensus 77 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------------- 122 (170) T 3k9w_A 77 LKDF---------VRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMT------------------------- 122 (170) T ss_dssp HHHH---------HHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEEC------------------------- T ss_pred CCCC---------CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEC------------------------- T ss_conf 5320---------001352367772224137888878888778755575428830------------------------- Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 233454205898099980746886889999999879685111 Q gi|254780649|r 173 SLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) .+....+||||+||+++++|+++++| T Consensus 123 ----------------~~~~~~~ISST~IR~~i~~~~~i~~l 148 (170) T 3k9w_A 123 ----------------PSDQYQFISGTIVREIAQLGGDVSKF 148 (170) T ss_dssp ----------------CCGGGTTCCHHHHHHHHHTTCCCTTT T ss_pred ----------------CCCCCCCCCHHHHHHHHHCCCCHHHH T ss_conf ----------------67787632879999999849993583 No 16 >1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Probab=99.88 E-value=7.7e-23 Score=150.82 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=79.6 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHHHH Q ss_conf 789982778971338999999999986299889999758998755566889999999986310-4753213425531000 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYLNH 98 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~~~ 98 (216) .|||||||||||||+||+.+|+.|.+.+ |+++++|++.+++|... ..+.|..++..+. ...+..+...+... . T Consensus 1 ~K~aifgGsFdPiH~GHl~ia~~a~~~~--d~~~v~~~~~~~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (158) T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMF--DHVILAIAASPSKKPMF---TLEERVALAQQATAHLGNVEVVGFSDLM-A 74 (158) T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEESCCSSCCSS---CHHHHHHHHHHHTTTCTTEEEEEECSCH-H T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC---CHHHHHHHHHHHHHHHCCCCCCCHHHHH-H T ss_conf 9689980077988799999999999977--96679850553345557---7788899999974200254544201333-3 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH Q ss_conf 32899999972013678438961688135777776199999758989993899871432158999986325881233454 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216) .++.. ........+..+...+..+..+....... T Consensus 75 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 108 (158) T 1qjc_A 75 NFARN----------QHATVLIRGLRAVADFEYEMQLAHMNRHL------------------------------------ 108 (158) T ss_dssp HHHHH----------TTCCEEEEECCTTCCHHHHHHHHHHHHHH------------------------------------ T ss_pred HHHCC----------CCEEEEEECCCCCHHHHHHHHHHHHHHHH------------------------------------ T ss_conf 23003----------45289986022312678887899999875------------------------------------ Q ss_pred HHCCCCEEEEE-ECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 20589809998-0746886889999999879685111 Q gi|254780649|r 179 CTTSPPSWLFI-HDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 179 ~~~~~~~~~~i-~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ......+.++ ..+..+||||+||+++++|+++++| T Consensus 109 -~~~~~~~~~~~~~~~~~ISST~IR~~i~~g~~i~~l 144 (158) T 1qjc_A 109 -MPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHF 144 (158) T ss_dssp -CTTSEEEEECCCGGGTTCCHHHHHHHHHTTCCCGGG T ss_pred -CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHH T ss_conf -667653897479887615789999999859994595 No 17 >3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A biosynthetic pathway, coenzyme A biosynthesis, cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} Probab=99.88 E-value=2e-22 Score=148.43 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=83.8 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHHHH Q ss_conf 789982778971338999999999986299889999758998755566889999999986310-4753213425531000 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYLNH 98 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~~~ 98 (216) .+||||||||||||+||+.+++.|.+.+ |++++++++.+..+ ...++..|.+|.+.+. ..+++.|++.+.. T Consensus 3 ~~IgifgGsFdPiH~GHl~i~~~a~~~~--d~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 74 (168) T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRF--DEIHVCVLKNSKKE---GTFSLEERMDLIEQSVKHLPNVKVHQFSGL--- 74 (168) T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGS--SEEEEEECC--------CCSCHHHHHHHHHHHTTTCTTEEEEECCSC--- T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHC--CCCEECCCCCCCCC---CCCCHHHHHHHHHHHHCCCCCEEEEECCCC--- T ss_conf 6489975146887799999999999868--95415334786555---557898999999986445797699842665--- Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH Q ss_conf 32899999972013678438961688135777776199999758989993899871432158999986325881233454 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216) +++... +.............+.+.....|..+...... T Consensus 75 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 112 (168) T 3f3m_A 75 --LVDYCE---QVGAKTIIRGLRAVSDFEYELRLTSMNKKLNN------------------------------------- 112 (168) T ss_dssp --HHHHHH---HHTCCEEEEEECTTCCHHHHHHHHHHHHHHCT------------------------------------- T ss_pred --CCHHHH---HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC------------------------------------- T ss_conf --402255---52543100132351378888889999887576------------------------------------- Q ss_pred HHCCCCEEEE-EECCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 2058980999-80746886889999999879685111 Q gi|254780649|r 179 CTTSPPSWLF-IHDRHHIISSTAIRKKIIEQDNTRTL 214 (216) Q Consensus 179 ~~~~~~~~~~-i~~~~~~ISST~IR~~l~~~~~i~~L 214 (216) ....+++ ......+||||+||+++++|+++++| T Consensus 113 ---~~~~i~~~~~~~~~~ISST~IRe~i~~g~~i~~~ 146 (168) T 3f3m_A 113 ---EIETLYMMSSTNYSFISSSIVKEVAAYRADISEF 146 (168) T ss_dssp ---TSEEEEEECCTTTTTCCHHHHHHHHHTTCCCTTT T ss_pred ---CCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHH T ss_conf ---7647840467677602589999999849995696 No 18 >1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Probab=99.86 E-value=3.4e-21 Score=141.31 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=49.6 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 7899827789713389999999999862998899997589987555668899999999863104 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK 83 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~ 83 (216) .+||||||||||||+||+.+++.|++.+ |+|+++|+..++.+. ..+.+.|..|++.... T Consensus 2 ~~IgifgGsFdPiH~GHl~l~~~a~~~~--D~v~v~~~~~~~~~~---~~~~~~~~~~~~~~~~ 60 (169) T 1o6b_A 2 ASIAVCPGSFDPVTYGHLDIIKRGAHIF--EQVYVCVLNNSSKKP---LFSVEERCELLREVTK 60 (169) T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCCSSCC---SSCHHHHHHHHHHHHT T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEECCCCCCCCCC---CCCHHHHHHHHHHHHH T ss_conf 8289982256857799999999999879--986871234556677---7898999999999862 No 19 >3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Probab=99.74 E-value=2.2e-19 Score=130.94 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=81.0 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHH Q ss_conf 7899827789713389999999999862998899997589987555668899999999863104-753213425531000 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITAFEAYLNH 98 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~~E~~~~~ 98 (216) |||++ ||||||+|.||+.+++.|++.++.+.|+++++..++.++.....+.++|.+|++.... .+.+.+...+..... T Consensus 1 MkV~l-gG~FD~~H~GH~~ll~~A~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (148) T 3do8_A 1 MKVAL-GGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPY 79 (148) T ss_dssp CCEEE-EECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTT T ss_pred CEEEE-ECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 98999-36738848899999999998489729970278456520000000057899999976442467421110011034 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCE Q ss_conf 3289999997201367843896168813577777619999975898 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPI 144 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~i 144 (216) .. ..+. + .-++++|.|...+.+.|.+....-....+ T Consensus 80 ~~-------~~~~--~-~~~~v~g~d~~~~~~~~~~~~~~~~~~~~ 115 (148) T 3do8_A 80 GK-------TLDV--D-FEYLVVSPETYEMALKINQKREELGKRKI 115 (148) T ss_dssp TT-------TTTS--C-CSEEEECTTTHHHHHHHHHHHHHHTCCCC T ss_pred HH-------HHHC--C-CCEEEECCEEECCHHHHHHHHHHCCCCCC T ss_conf 45-------6535--8-86777766785567888547987188763 No 20 >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Probab=99.68 E-value=3.8e-18 Score=123.74 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=51.5 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 78998277897133899999999998629988999975899-------875556688999999998631047 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN-------SVKNYNLSSSLEKRISLSQSLIKN 84 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~-------p~K~~~~~~~~~~R~~m~~~~~~~ 84 (216) -||||+||+|||+|.||+.+++.|.+.+ |+++++++..+ +.+......+.++|++|++.+..+ T Consensus 2 Kkigv~iG~FDpvH~GH~~li~~A~~~~--d~l~vvi~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~ 71 (365) T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKY 71 (365) T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTST T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 7389998726987889999999999967--986899985798653346554546689999999999984777 No 21 >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Probab=99.62 E-value=1.2e-15 Score=109.27 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=47.9 Q ss_pred C-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE-C-CCCCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 7-899827789713389999999999862998899997-5-89987555668899999999863104 Q gi|254780649|r 20 M-KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWII-T-PFNSVKNYNLSSSLEKRISLSQSLIK 83 (216) Q Consensus 20 m-kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ip-s-~~~p~K~~~~~~~~~~R~~m~~~~~~ 83 (216) | ++|||+|+|+|+|+||+.+++.|.+.+ |+|++++ | ..++-+ ....++++|.+|++.++. T Consensus 6 ~~~~~v~~GrFqP~H~GH~~~i~~a~~~~--d~viv~vgs~~~~~~~--~nPft~~eR~~mi~~~l~ 68 (352) T 2qjt_B 6 MYDISVFIGRFQPFHKGHLHNIIIALQNS--KKVIINIGSCFNTPNI--KNPFSFEQRKQMIESDLQ 68 (352) T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHSE--EEEEEEEEEESCCCCS--SSCSCHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHH T ss_conf 56689999635998778999999998559--9699999469988887--899899999999999988 No 22 >3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661} Probab=99.50 E-value=4.9e-13 Score=94.27 Aligned_cols=182 Identities=11% Similarity=-0.070 Sum_probs=93.6 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 87899827789713389999999999862998899997589987--5556688999999998631047532134255310 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV--KNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYL 96 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~--K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~ 96 (216) .+||+-.-|.|||+|+||+.+++++++ -|.++.|+|+.... +..+...+..+|++|+..+..+--++........ T Consensus 51 ~~ki~~i~~EyNPFHnGHlylie~ak~---~d~iI~VmSgnfvQ~~RGepai~~k~~Ra~mAl~~GaDlViELP~~~~~~ 127 (357) T 3gmi_A 51 KDKIVCDFTEYNPLHKGHKYALEKGKE---HGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRAGADIVVEGPPMGIMG 127 (357) T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHT---SSEEEEEECCTTSBCTTSSBCSSCHHHHHHHHHHHTCSEEEECCCGGGSC T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEEC T ss_conf 682899987328986789999999985---59989996898655566774439999999999982888464367536744 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEE-----ECC-CCC----HHHHCCHHHHHHH Q ss_conf 003289999997201367843896168813577777619999975898999-----389-987----1432158999986 Q gi|254780649|r 97 NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAII-----DRF-DVT----FNYISSPMAKTFE 166 (216) Q Consensus 97 ~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~-----~R~-g~~----~~~~~~~~~~~~~ 166 (216) ...|..-.+.-+..... ..++|....+... +.--+.+....++... ... +.. ....+..++.... T Consensus 128 sa~Fa~~aV~ll~~lg~-d~l~FG~e~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~iL~~~~i 202 (357) T 3gmi_A 128 SGQYMRCLIKMFYSLGA-EIIPRGYIPEKTM----EKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQ 202 (357) T ss_dssp HHHHHHHHHHHHHHHTC-CEEEEEECCCHHH----HHHHHHHHTTCCEEEETTEEEETTTCCEEESCCCGGGHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCC-CEEECCCCCHHHH----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 27889889888887297-5220158882799----999999985077376899998865207788887558999755526 Q ss_pred HCCCCHHHHHHHHHCCCCEEEEEECC-CCCCCHHHHHHHHHCCC--CCCCC Q ss_conf 32588123345420589809998074-68868899999998796--85111 Q gi|254780649|r 167 YARLDESLSHILCTTSPPSWLFIHDR-HHIISSTAIRKKIIEQD--NTRTL 214 (216) Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~ISST~IR~~l~~~~--~i~~L 214 (216) .. .. ............+... ...+|||.||++|++|+ +++++ T Consensus 203 ~~-----~~-i~R~~~~~~~~~i~~~~~~~~SAT~IR~~i~~g~~e~i~~~ 247 (357) T 3gmi_A 203 MI-----YK-LNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNM 247 (357) T ss_dssp HH-----HH-HHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGTGGG T ss_pred CE-----EE-HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 54-----41-11211568863123665451169999999985887799873 No 23 >2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Probab=99.45 E-value=1.1e-13 Score=98.03 Aligned_cols=93 Identities=22% Similarity=0.186 Sum_probs=61.8 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 789982778971338999999999986299889999758998--755566889999999986310475321342553100 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNS--VKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLN 97 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p--~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~~ 97 (216) ||..+.+|+|||+|.||+.+.+.|.+.. |.+++..+..+. .|++....+.++|.++++++-.-+.+.+.+. T Consensus 1 MK~V~~~G~FD~lH~GHi~~l~~Ak~~g--d~liV~v~~D~~~~~~k~~p~~~~~~R~~~l~~l~~Vd~v~~~~~----- 73 (132) T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMG--DYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKG----- 73 (132) T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTS--SEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHTBTTCCEEEEECC----- T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHC--CEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEECC----- T ss_conf 9399992267889989999999999729--999999816556553148885608999877400577889998045----- Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 0328999999720136784389616881 Q gi|254780649|r 98 HTETFHTILQVKKHNKSVNFVWIMGADN 125 (216) Q Consensus 98 ~syT~dtL~~lk~~~p~~~l~fiiG~D~ 125 (216) ..++.+.+ ++..|+ +++.|.|. T Consensus 74 ~~~~~~~i---~~~~~d---~~v~G~d~ 95 (132) T 2b7l_A 74 WGQKEDDV---EKFDVD---VFVMGHDW 95 (132) T ss_dssp GGGHHHHH---HHTTCC---EEEECGGG T ss_pred CCCHHHHH---HHHCCC---EEEECCCC T ss_conf 22469999---972997---99985886 No 24 >1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Probab=99.37 E-value=9.8e-13 Score=92.53 Aligned_cols=93 Identities=25% Similarity=0.235 Sum_probs=61.1 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 7899827789713389999999999862998899997589987--55566889999999986310475321342553100 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV--KNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLN 97 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~--K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~~ 97 (216) ||..+.+|+|||+|.||+.+.+.|.+.. |++++..+..+.. +++....+.++|.++++++-.-..+.+.+ + T Consensus 1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~g--d~liV~v~~D~~~~~~k~~pi~~~~eR~~~l~~l~~Vd~v~~~~-----~ 73 (129) T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEK-----N 73 (129) T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEEC-----C T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHC--CEEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC-----C T ss_conf 9399993454879989999999999729--98999970671020589988789999999986525878899737-----8 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 0328999999720136784389616881 Q gi|254780649|r 98 HTETFHTILQVKKHNKSVNFVWIMGADN 125 (216) Q Consensus 98 ~syT~dtL~~lk~~~p~~~l~fiiG~D~ 125 (216) ..++.+. +++..|+ +++.|.|. T Consensus 74 ~~~~~~~---i~~~~~d---~~v~g~d~ 95 (129) T 1coz_A 74 WEQKKQD---IIDHNID---VFVMGDDW 95 (129) T ss_dssp STTHHHH---HHHTTCS---EEEEEGGG T ss_pred CCCCHHH---HHHCCCC---EEEECCCC T ss_conf 5537888---8523996---99987874 No 25 >3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Probab=99.28 E-value=4.2e-12 Score=88.89 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=51.4 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 878998277897133899999999998629988999975899--875556688999999998631047532134255310 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN--SVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYL 96 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~--p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~ 96 (216) ||+-.+.+|+|||+|.||+.+.+.|.+.. +.+.......+ +.+........+.|..++........+... T Consensus 1 ~M~rV~~~G~FD~~H~GH~~ll~~Ak~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (143) T 3glv_A 1 GMIRVMATGVFDILHLGHIHYLKESKKLG--DELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILG------ 72 (143) T ss_dssp CCCEEEEEECCSSCCHHHHHHHHHHHTTS--SEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEEC------ T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE------ T ss_conf 97899998578999899999999998709--8223222357400023322006899999862245540489974------ Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 00328999999720136784389616881 Q gi|254780649|r 97 NHTETFHTILQVKKHNKSVNFVWIMGADN 125 (216) Q Consensus 97 ~~syT~dtL~~lk~~~p~~~l~fiiG~D~ 125 (216) ......+.+..+ .++ +++.|.|- T Consensus 73 ~~~~~~~~~~~~---~~~---~~v~G~D~ 95 (143) T 3glv_A 73 HEGDMMKTVIEV---KPD---IITLGYDQ 95 (143) T ss_dssp CTTCHHHHHHHH---CCS---EEEECTTC T ss_pred CCHHHHHHHHHH---CCC---EEEECCCC T ss_conf 114677899996---999---89977875 No 26 >3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Probab=98.93 E-value=3.4e-09 Score=72.13 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=33.1 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE--CCCC---CCCCC-CCCCCHHHHHHHHHHH Q ss_conf 789987899827789713389999999999862998899997--5899---87555-6688999999998631 Q gi|254780649|r 15 KVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWII--TPFN---SVKNY-NLSSSLEKRISLSQSL 81 (216) Q Consensus 15 ~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ip--s~~~---p~K~~-~~~~~~~~R~~m~~~~ 81 (216) ...+++||+.-.|+||++|.||+.+.+.|.+.. |+.++++ .... ..|.+ ....+.++|..+++++ T Consensus 193 ~~~~~~kivyv~G~FDl~H~GHi~~L~~Ak~~g--d~~~LIVgv~sD~~v~~~Kg~~~Pi~~~~eR~~~v~~~ 263 (341) T 3elb_A 193 EPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLA--ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLAC 263 (341) T ss_dssp CCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTS--SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTB T ss_pred CCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHC T ss_conf 889898499993335256625999999999729--98626999966488996349999989999999999703 No 27 >3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Probab=98.90 E-value=2.9e-09 Score=72.55 Aligned_cols=130 Identities=16% Similarity=0.059 Sum_probs=72.7 Q ss_pred HHHEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC---CCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 232021677899878998277897133899999999998629988999975899---87555668899999999863104 Q gi|254780649|r 7 LQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN---SVKNYNLSSSLEKRISLSQSLIK 83 (216) Q Consensus 7 ~~~~~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~---p~K~~~~~~~~~~R~~m~~~~~~ 83 (216) +.-..+-++.++++|| .=-|+||++|.||+.+.+.|.+.+.-+.+++.++... ..|.. ...+.++|..++..+.. T Consensus 64 ~~~~~~~~~~~~~~rV-yv~G~FDLfH~GHi~lL~~AK~l~~gd~LIVGV~sDe~i~k~Kg~-pi~~~~eR~~~l~~~r~ 141 (236) T 3hl4_A 64 MEEACRGTPCERPVRV-YADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGF-TVMNENERYDAVQHCRY 141 (236) T ss_dssp HHHHHHCCCTTSCEEE-EEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCC-CSSCHHHHHHHHHTBTT T ss_pred HHHHHHCCCCCCCEEE-EEECEECCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCC-CCCCHHHHHHHHHHCCC T ss_conf 9998526887899599-994515888989999999996059989899997778999856999-99999999998652145 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEC Q ss_conf 753213425531000328999999720136784389616881357777761999997589899938 Q gi|254780649|r 84 NPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDR 149 (216) Q Consensus 84 ~~~i~v~~~E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R 149 (216) -..+.+.+ +..++.+.+ ++..++ +++.|.|..........++.+-+...++.++| T Consensus 142 VD~VI~~~-----p~~~~~~~l---~~~~~d---~vv~gdd~~~~~~~~~~~~~~k~~g~~~~i~r 196 (236) T 3hl4_A 142 VDEVVRNA-----PWTLTPEFL---AEHRID---FVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQR 196 (236) T ss_dssp CSEEESSC-----CSSCCHHHH---HHTTCC---EEEEESSCCCCSSCSCTTHHHHHTTCEEEECC T ss_pred CCCCCCCC-----CCCCCHHHH---HHHCCC---EEEECCCCCCCCCCHHHHHHHHHCCEEEEECC T ss_conf 53522489-----855629999---872997---89868964427771559999873899999789 No 28 >3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Probab=98.86 E-value=5.9e-09 Score=70.74 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=65.3 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC---CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 899878998277897133899999999998629988999975899---87555668899999999863104753213425 Q gi|254780649|r 16 VEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN---SVKNYNLSSSLEKRISLSQSLIKNPRIRITAF 92 (216) Q Consensus 16 ~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~---p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~ 92 (216) .++++|| .-.|+||++|.||+.+.+.|.+.. |++++.++... ..|. ....+.++|++|++++---..+.+.. T Consensus 4 ~~~~~rV-~~~G~FDl~H~GH~~~l~~Ak~~g--d~LiVgv~sD~~i~~~Kg-~Pv~~~~eR~~~v~~~k~VD~Vi~~~- 78 (341) T 3elb_A 4 GRRAVRV-WCDGCYDMVHYGHSNQLRQARAMG--DYLIVGVHTDEEIAKHKG-PPVFTQEERYKMVQAIKWVDEVVPAA- 78 (341) T ss_dssp CCCCCEE-EEEECCCSCCHHHHHHHHHHHHTS--SEEEEEECCHHHHHHHSS-CCSSCHHHHHHHHHHBTTCCEEEETC- T ss_pred CCCCEEE-EEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHCCC-CCCCCHHHHHHHHHCCCCCCEEEECC- T ss_conf 9886699-993135778989999999999739--989999835699985599-99899999999997356887899668- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEC Q ss_conf 531000328999999720136784389616881357777761999997589899938 Q gi|254780649|r 93 EAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDR 149 (216) Q Consensus 93 E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R 149 (216) +...+.+. +++..|+ +++.|.|.-.+......++++-....+.+++| T Consensus 79 ----~~~~~~~~---l~~~~~d---~vv~GdD~~~~~~~~~~~~~~k~~g~~~~~~r 125 (341) T 3elb_A 79 ----PYVTTLET---LDKYNCD---FCVHGNDITLTVDGRDTYEEVKQAGRYRECKR 125 (341) T ss_dssp ----CSSCCHHH---HHHTTCS---EEEECSCCCBCTTSCBTTHHHHHTTCEEECCC T ss_pred ----CCCCHHHH---HHHHCCC---EEEECCCCCCCCCCHHHHHHHHCCCEEEEECC T ss_conf ----86257999---9986999---99988816567774127799980998998147 No 29 >2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-binding, multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Probab=98.55 E-value=1.5e-06 Score=56.84 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=60.2 Q ss_pred ECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCC-----CCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 16778998789982778971338999999999986---2998899997589-----987555668899999999863104 Q gi|254780649|r 12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKK---LNLDQLWWIITPF-----NSVKNYNLSSSLEKRISLSQSLIK 83 (216) Q Consensus 12 ~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~---l~ld~v~~ips~~-----~p~K~~~~~~~~~~R~~m~~~~~~ 83 (216) ..|..-++.-++| |.||=+|.||..+.+.+.+. .++.-+.+.-.+. .|.+....+.+.++|.++++..-- T Consensus 9 ~ip~~~~~svvtI--G~FDGvHlGHq~Li~~~~~~A~~~~~~~~viTF~phP~~~~~~~~~~~~l~~~~ek~~~l~~~gi 86 (338) T 2x0k_A 9 AVPKDLDNSAVTI--GVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFGI 86 (338) T ss_dssp GSCTTCCCEEEEE--SCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTTC T ss_pred HCCCCCCCCEEEE--ECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 7784469919999--72733248999999999999997299889999459899980976775012457999999875499 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH Q ss_conf 753213425531000328999999720136784389616881357 Q gi|254780649|r 84 NPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKS 128 (216) Q Consensus 84 ~~~i~v~~~E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~ 128 (216) + .+.+-++..+......-+=+..+....-+.. .+++|.|--.. T Consensus 87 d-~~~~i~F~~~~a~ls~e~Fi~~il~~~l~~k-~ivvG~Df~FG 129 (338) T 2x0k_A 87 D-GVLVIDFTRELSGTSPEKYVEFLLEDTLHAS-HVVVGANFTFG 129 (338) T ss_dssp S-EEEEECTTTSSSSCCHHHHHHHCCCCCTCEE-EEEEETTCEES T ss_pred C-EEEEECHHHHHHCCCHHHHHHHHHHHHCCCE-EEEEECCCCCC T ss_conf 8-8999502787632798889999987303733-99994554443 No 30 >1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel, nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Probab=98.27 E-value=1.1e-05 Score=51.98 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=38.6 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEECCCCCC----CCCCCCCCHHHHHHHHHHHC Q ss_conf 99827789713389999999999862---998899997589987----55566889999999986310 Q gi|254780649|r 22 IGLFGGNFNPPHHGHIEIAQIAIKKL---NLDQLWWIITPFNSV----KNYNLSSSLEKRISLSQSLI 82 (216) Q Consensus 22 IgifGGSFdPiH~gHl~ia~~~~~~l---~ld~v~~ips~~~p~----K~~~~~~~~~~R~~m~~~~~ 82 (216) ++| |+||=+|.||..+.+.+.+.. ++.-+.+.-.+ +|. +......+.++|+.+++... T Consensus 3 vaI--G~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tf~~-~p~~~~~~~~~~l~~~~~r~~~l~~~g 67 (293) T 1mrz_A 3 VSI--GVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISY-PPEYFLPDFPGLLMTVESRVEMLSRYA 67 (293) T ss_dssp EEE--ECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESS-CGGGGSTTCCCBSSCHHHHHHHHTTTS T ss_pred EEE--ECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CHHHHCCCCCCCCCCHHHHHHHHHHHC T ss_conf 999--50620138999999999999997099969999596-979969999401489999999998728 No 31 >3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Probab=98.07 E-value=1.1e-05 Score=51.89 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=51.0 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCC---CEEEEE--ECCC---CCCCCC--CCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 8789982778971338999999999986299---889999--7589---987555--66889999999986310475321 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNL---DQLWWI--ITPF---NSVKNY--NLSSSLEKRISLSQSLIKNPRIR 88 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~l---d~v~~i--ps~~---~p~K~~--~~~~~~~~R~~m~~~~~~~~~i~ 88 (216) +.-++| |.||=+|.||-.+.+.+.+.-.- .-+.+. |.|. .|.... ....+.++|.++++..- -+.+. T Consensus 21 ~sVvtI--G~FDGvHlGHq~li~~~~~~a~~~~~~~~v~TF~phP~~~~~~~~~~~~~~l~~~~ek~~~l~~~G-id~~~ 97 (308) T 3op1_A 21 DSVVVL--GYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG-VEELY 97 (308) T ss_dssp CEEEEE--SCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT-CCEEE T ss_pred CCEEEE--ECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCHHCCCCCHHHHHHHHHHCC-CCEEE T ss_conf 949999--717211189999999999999981997899976799899839678523112589899999998729-97899 Q ss_pred CCHHHH---HHHHHHHHHHHHHHHCCCCCCCEEEECCCCC Q ss_conf 342553---1000328999999720136784389616881 Q gi|254780649|r 89 ITAFEA---YLNHTETFHTILQVKKHNKSVNFVWIMGADN 125 (216) Q Consensus 89 v~~~E~---~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~ 125 (216) +-++.. ...+...++. |.+... .. ..++|.|- T Consensus 98 ~~~F~~~~a~ls~e~Fi~~---L~~~l~-~~-~ivvG~DF 132 (308) T 3op1_A 98 LLDFSSQFASLTAQEFFAT---YIKAMN-AK-IIVAGFDY 132 (308) T ss_dssp EECCCHHHHTCCHHHHHHH---HHHHHT-EE-EEEEETTC T ss_pred EEECCHHHHHCCHHHHHHH---HHHHCC-CC-EEEECCCC T ss_conf 9846888850899999999---998558-88-99988885 No 32 >1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Probab=97.81 E-value=0.00016 Score=45.12 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=86.5 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC----CCCCCCCCHHHHHH Q ss_conf 89982778971338999999999986299889999758998755566889999999986310----47532134255310 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI----KNPRIRITAFEAYL 96 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~----~~~~i~v~~~E~~~ 96 (216) +|.=|= |=||+|.||..+.+.+++.++-|-+++.|... +.|. +-.+..-|+.-.+.++ ...++.++.+.... T Consensus 194 ~VvaFq-TRNp~Hr~He~l~~~al~~~~~~~lli~p~~G-~~k~--~d~~~~~r~~~~~~~~~~~~~~~~~~l~~l~~~m 269 (396) T 1jhd_A 194 KVVAFQ-TRNPMHRAHEELCRMAMESLDADGVVVHMLLG-KLKK--GDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDM 269 (396) T ss_dssp SEEEEE-ESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC-CCCT--TCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCC T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 677764-26889758999999999971578379854433-5878--7789899999999998623898755998435653 Q ss_pred ---HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH---HHHHHHHHHC------CEEEEECCC--CCHHHHCCHHH Q ss_conf ---003289999997201367843896168813577777---6199999758------989993899--87143215899 Q gi|254780649|r 97 ---NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQW---HHWKRIVTTV------PIAIIDRFD--VTFNYISSPMA 162 (216) Q Consensus 97 ---~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W---~~~~~ll~~~------~iiV~~R~g--~~~~~~~~~~~ 162 (216) |+.-.+ +.++-.++=+++ .||+|-|- .+.... +..++|++.. .|-++.=++ |..+ . T Consensus 270 ~yAGPrEa~--~hAiir~N~Gct-hfivGRDH-AG~g~~Y~~~~aq~i~~~~~~e~~l~I~i~~~~~~~Yc~~-c----- 339 (396) T 1jhd_A 270 LYAGPREAV--LHAYFRQNMGAT-HFIIGRDH-AGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKK-L----- 339 (396) T ss_dssp CCCTHHHHH--HHHHHHHHTTCS-EEEECTTT-TCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETT-T----- T ss_pred CCCCCHHHH--HHHHHHHHCCCC-EEEECCCC-CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCEEEECC-C----- T ss_conf 457854888--999999866984-16535777-7633358916678998712676787438997365299877-8----- Q ss_pred HHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC Q ss_conf 9986325881233454205898099980746886889999999879685 Q gi|254780649|r 163 KTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNT 211 (216) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i 211 (216) ....... -+.... ......||.|++|++|++|+.+ T Consensus 340 ---~~~~~~~-----~~p~~~------~~~~~~iSGt~~r~~l~~g~~p 374 (396) T 1jhd_A 340 ---NKIVMMR-----DVPDHT------KEDFVLLSGTKVREMLGQGIAP 374 (396) T ss_dssp ---TEEEEGG-----GCTTCC------GGGEECCCHHHHHHHHHTTCCC T ss_pred ---CEEEECC-----CCCCCC------CCCCEEECHHHHHHHHHCCCCC T ss_conf ---8699736-----568887------3241774589999999883888 No 33 >1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5 Probab=97.69 E-value=0.00022 Score=44.36 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=83.9 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC----CCCCCCHHHHHH Q ss_conf 8998277897133899999999998629988999975899875556688999999998631047----532134255310 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN----PRIRITAFEAYL 96 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~----~~i~v~~~E~~~ 96 (216) +|.-|- |=||+|.||-.+.+.+.+.. |.+++.|- ..+.| .+-.+.+-|+.-.+.++++ .++.+..+.... T Consensus 157 ~VvaFq-TRNp~HraHe~i~r~a~e~~--d~lli~pl-vG~~k--~~d~~~~~r~~~~~~~~~~~~~~~~~~l~~l~~~~ 230 (349) T 1v47_A 157 KVVAFQ-TRNAPHRAHEYLIRLGLELA--DGVLVHPI-LGAKK--PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPM 230 (349) T ss_dssp SEEEEE-ESSCCCHHHHHHHHHHHHHS--SEEEEEEB-CSCCC--TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCC T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHHC--CCEEEEEC-CCCCC--CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH T ss_conf 689985-27988757999999999747--97899605-46776--56568799999999998345887639998447502 Q ss_pred ---HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH---HHHHHHHHHC---CEEEEECCCCCHHHHCCHHHHHHHH Q ss_conf ---003289999997201367843896168813577777---6199999758---9899938998714321589999863 Q gi|254780649|r 97 ---NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQW---HHWKRIVTTV---PIAIIDRFDVTFNYISSPMAKTFEY 167 (216) Q Consensus 97 ---~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W---~~~~~ll~~~---~iiV~~R~g~~~~~~~~~~~~~~~~ 167 (216) |+.-. .+.++-.++=+++ .||+|-|-. +.... +..+++++.. .|-++.=++.-.-.. ... T Consensus 231 ~~aGPrEa--~lhAiirkN~Gct-hfivGrdhA-G~~~~Y~~~~a~~i~~~~~~l~I~~v~~~~~~yc~~-------~~~ 299 (349) T 1v47_A 231 RYAGPKEA--VFHALVRKNFGAT-HFLVGRDHA-GVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPL-------CGG 299 (349) T ss_dssp CCCTHHHH--HHHHHHHHHTTCS-EEEECTTTT-CSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEETT-------TTE T ss_pred HCCCCHHH--HHHHHHHHHCCCC-EEEECCCCC-CCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEEECC-------CCC T ss_conf 01684788--9999999877997-064368888-622357915778998648456736996573389733-------484 Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC Q ss_conf 25881233454205898099980746886889999999879685 Q gi|254780649|r 168 ARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNT 211 (216) Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i 211 (216) ........+. -......||.|+||++|++|+.+ T Consensus 300 ~~~~~~cp~~-----------~~~~~~~iSgt~iR~~L~~g~~~ 332 (349) T 1v47_A 300 IASERTCPEG-----------HREKRTAISMTKVRALLREGKAP 332 (349) T ss_dssp EEETTTSCGG-----------GGGGCEECCHHHHHHHHHTTCCC T ss_pred EEECCCCCCC-----------CCCCCEECCHHHHHHHHHCCCCC T ss_conf 7332557998-----------76455642789999999874888 No 34 >1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 Probab=97.63 E-value=0.001 Score=40.48 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=78.3 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-C--CCCCCHHHHHH---H Q ss_conf 8277897133899999999998629988999975899875556688999999998631047-5--32134255310---0 Q gi|254780649|r 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN-P--RIRITAFEAYL---N 97 (216) Q Consensus 24 ifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~-~--~i~v~~~E~~~---~ 97 (216) +---|-||+|.||..+...+.+..+ +.+++.|. ..+.|. +-.+.+-|+.-.+.++++ + .+.+..+.... + T Consensus 191 vafqTRNp~HraHe~ii~~a~~~~~-~~lli~pl-vG~~k~--gd~~~~~r~~~~~~~~~~~p~~~~~l~~~~~~~ryaG 266 (395) T 1r6x_A 191 VAFQTRNPMHRAHRELTVRAAREAN-AKVLIHPV-VGLTKP--GDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSG 266 (395) T ss_dssp EEECCSSCCCHHHHHHHHHHHHHTT-CEEEECCB-CSBCCT--TCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBCCCCH T ss_pred EEEEECCCCCHHHHHHHHHHHHHCC-CCEEEEEC-CCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC T ss_conf 6887178897689999999998449-97899702-225886--6668799999999999737887599804764335567 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHH--------HHHHHHHHHHHHHH----CCEEEEECCCCCHHHHCCHHHHHH Q ss_conf 032899999972013678438961688135--------77777619999975----898999389987143215899998 Q gi|254780649|r 98 HTETFHTILQVKKHNKSVNFVWIMGADNIK--------SFHQWHHWKRIVTT----VPIAIIDRFDVTFNYISSPMAKTF 165 (216) Q Consensus 98 ~syT~dtL~~lk~~~p~~~l~fiiG~D~l~--------~l~~W~~~~~ll~~----~~iiV~~R~g~~~~~~~~~~~~~~ 165 (216) +.-. .+.++-.++-+++ .||+|-|-.- ++-.=+..++++.. ..|-++.=++...- T Consensus 267 PrEa--~lhAiirkN~Gct-hfivGrdhAg~g~~~~~~~~Y~~~~a~~~~~~~~~~l~I~ii~~~~~~Yc---------- 333 (395) T 1r6x_A 267 DREA--VWHAIIRKNYGAS-HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYL---------- 333 (395) T ss_dssp HHHH--HHHHHHHHHTTCS-EEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCEEEE---------- T ss_pred CHHH--HHHHHHHHHCCCC-CEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCEEEE---------- T ss_conf 2677--8889999866998-40037776788988767655783057789986531369649970513997---------- Q ss_pred HHCCCCHHHHHHHHHCCCCEEEEE------ECCCCCCCHHHHHHHHHCCCCC Q ss_conf 632588123345420589809998------0746886889999999879685 Q gi|254780649|r 166 EYARLDESLSHILCTTSPPSWLFI------HDRHHIISSTAIRKKIIEQDNT 211 (216) Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i------~~~~~~ISST~IR~~l~~~~~i 211 (216) .. . ..+... ......+|+|+||++|++|+.+ T Consensus 334 -~~-----c---------~~~~~~~~~~~~~~~~~~iSGt~ir~~L~~G~~~ 370 (395) T 1r6x_A 334 -PD-----E---------DRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEI 370 (395) T ss_dssp -GG-----G---------TEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCC T ss_pred -CC-----C---------CCEEECCCCCCCCCCEEEECHHHHHHHHHCCCCC T ss_conf -37-----8---------8288767789973354732699999999778888 No 35 >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Probab=97.42 E-value=0.0039 Score=37.15 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=81.2 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCHHHHHH- Q ss_conf 8998277897133899999999998629988999975899875556688999999998631047---532134255310- Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN---PRIRITAFEAYL- 96 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~---~~i~v~~~E~~~- 96 (216) +|+-|= |-||+|.||..+...+.+..+ +-+++.|. ..+.|. +-.+.+-|+.-.+.+.++ .++.+..+.... T Consensus 192 ~vvaFq-TRNp~HraHE~l~~~a~~~~~-~~llI~pl-vG~~k~--~d~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~m~ 266 (573) T 1m8p_A 192 RVVAFQ-TRNPMHRAHRELTVRAARSRQ-ANVLIHPV-VGLTKP--GDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAMR 266 (573) T ss_dssp SEEEEC-CSSCCCHHHHHHHHHHHHHTT-CEEEECCB-CCCCCT--TCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCCC T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHCC-CCEEECCC-CCCCCC--CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCC T ss_conf 046652-278887689999999998637-96784430-014676--6667899999998888508876357424564324 Q ss_pred --HHHHHHHHHHHH-HCCCCCCCEEEECCCCCHH--------HHHHHHHHHHHHH----HCCEEEEECCCCCHHHHCCHH Q ss_conf --003289999997-2013678438961688135--------7777761999997----589899938998714321589 Q gi|254780649|r 97 --NHTETFHTILQV-KKHNKSVNFVWIMGADNIK--------SFHQWHHWKRIVT----TVPIAIIDRFDVTFNYISSPM 161 (216) Q Consensus 97 --~~syT~dtL~~l-k~~~p~~~l~fiiG~D~l~--------~l~~W~~~~~ll~----~~~iiV~~R~g~~~~~~~~~~ 161 (216) |+.-.+ +.++ ++.| +++ .||+|-|-.- +|-.=+..+++++ ...|-++.-++.-.-.. T Consensus 267 yaGPrEa~--lhAiirkN~-Gct-hfiVGRDHAG~g~~~~~~~fY~~~~a~~i~~~~~~~l~I~ii~~~~~~Yc~~---- 338 (573) T 1m8p_A 267 MGGPREAI--WHAIIRKNH-GAT-HFIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPD---- 338 (573) T ss_dssp CCHHHHHH--HHHHHHHHH-TCS-EEEECTTTTCCCCCTTCCCSSCTTHHHHHHHHHHHHHCCEEEECCCCCBBTT---- T ss_pred CCCCHHHH--HHHHHHHCC-CCC-EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHCCCCEECCCCCEEECC---- T ss_conf 57835888--989998527-985-5775566567788866787888413578998553320886102465064335---- Q ss_pred HHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC Q ss_conf 99986325881233454205898099980746886889999999879685 Q gi|254780649|r 162 AKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNT 211 (216) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i 211 (216) ...... ....++ ......+|.|+||++|++|+.+ T Consensus 339 ---c~~~~~--------~~~c~~-----~~~~~~iSgt~iR~~L~~G~~~ 372 (573) T 1m8p_A 339 ---TDEYRP--------VDQVPA-----GVKTLNISGTELRRRLRSGAHI 372 (573) T ss_dssp ---TTBCCC--------SSSSCT-----TSCCBCCCHHHHHHHHHHTCCC T ss_pred ---CCCEEE--------CCCCCC-----CCCEEEECHHHHHHHHHCCCCC T ss_conf ---672876--------677789-----8754511478999999779999 No 36 >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Probab=97.38 E-value=0.00091 Score=40.82 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=81.9 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC----CCCCCCHHHHHH Q ss_conf 8998277897133899999999998629988999975899875556688999999998631047----532134255310 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN----PRIRITAFEAYL 96 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~----~~i~v~~~E~~~ 96 (216) +|+-| -|-||+|.||..+.+.+++.++ +.+++.|. ..+.| .+-.+.+-|+.-.+.++++ .++.+..+.... T Consensus 165 ~VvaF-qTRNp~Hr~He~i~k~ale~~~-~~lli~pl-vG~~k--~gd~~~~~r~~~y~~~~~~~~~~~~~~l~~l~~~m 239 (546) T 2gks_A 165 KIVAF-QTRNPMHRVHEELTKRAMEKVG-GGLLLHPV-VGLTK--PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLAM 239 (546) T ss_dssp CEEEE-CCSSCCCHHHHHHHHHHHHHHT-SEEEECCB-CSBCC--TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCBC T ss_pred CCEEE-EECCCCCHHHHHHHHHHHHHHC-CCEEEECC-CCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 42466-6378897699999999998507-87798305-78787--66788799999999998503887726995347543 Q ss_pred ---HHHHHHHHHHH-HHCCCCCCCEEEECCCCCHH-----------H-HHHHHHHHHHHHHCCEEEEECCCCCHHHHCCH Q ss_conf ---00328999999-72013678438961688135-----------7-77776199999758989993899871432158 Q gi|254780649|r 97 ---NHTETFHTILQ-VKKHNKSVNFVWIMGADNIK-----------S-FHQWHHWKRIVTTVPIAIIDRFDVTFNYISSP 160 (216) Q Consensus 97 ---~~syT~dtL~~-lk~~~p~~~l~fiiG~D~l~-----------~-l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~ 160 (216) |+.-.+ +.+ +++.+.-+ .||+|-|-.- + .+.+.-+++.-....|-++.=+++..-.. T Consensus 240 ~yAGPrEa~--~hAiirkN~Gct--hfiVGRDHAG~g~~~~~~~fY~~~~a~~i~~~~~~~l~I~~i~~~~~~Yc~~--- 312 (546) T 2gks_A 240 RMAGPREAL--WHGIIRRNYGAT--HFIVGRDHASPGKDSKGKPFYDPYEAQELFKKYEDEIGIKMVPFEELVYVPE--- 312 (546) T ss_dssp CCCTHHHHH--HHHHHHHHTTCS--EEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCCEEETT--- T ss_pred CCCCCHHHH--HHHHHHHHCCCC--EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCEEECCCEEEECC--- T ss_conf 447847899--999998736985--5640565678776766766778367789998542221873010253087720--- Q ss_pred HHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH-HHHCCCCC Q ss_conf 9999863258812334542058980999807468868899999-99879685 Q gi|254780649|r 161 MAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRK-KIIEQDNT 211 (216) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~-~l~~~~~i 211 (216) .......... +.+ ......+|+|++|+ .|++|+.+ T Consensus 313 ----c~~~v~~~~c-------~h~-----~~~~i~~sgt~~r~~lL~~G~~~ 348 (546) T 2gks_A 313 ----LDQYVEINEA-------KKR-----NLKYINISGTEIRENFLKQGRKL 348 (546) T ss_dssp ----TTEEECSCC---------------------------CTHHHHTTTCCC T ss_pred ----CCEEEECCCC-------CCC-----CCCEEECCCHHHHHHHHHCCCCC T ss_conf ----3938876778-------998-----64356057379999999779999 No 37 >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Probab=97.37 E-value=0.003 Score=37.84 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=79.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHH Q ss_conf 7897133899999999998629988999975899875556688999999998631047---5321342553100032899 Q gi|254780649|r 27 GNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN---PRIRITAFEAYLNHTETFH 103 (216) Q Consensus 27 GSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~---~~i~v~~~E~~~~~syT~d 103 (216) -|=||+|.||..+...+.+..+ +.+.+.|. ..+.| ++-.+.+-|+.-.++++++ ..+.+..+....-....-+ T Consensus 195 qTRNplHraHe~li~~a~~~~~-~~lli~pl-vG~~k--~gD~~~~~rvr~y~~~~~~yp~~~~~l~~lp~~mr~aGPrE 270 (511) T 1g8f_A 195 QTRNPMHRAHRELTVRAAREAN-AKVLIHPV-VGLTK--PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDRE 270 (511) T ss_dssp EESSCCCHHHHHHHHHHHHHHT-CEEEEEEB-CSBCS--TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCCCCHHHH T ss_pred EECCCCCHHHHHHHHHHHHHCC-CCEEEEEE-ECCCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH T ss_conf 7268898689999999997336-75688531-21588--56668799999999999737787389813675346578188 Q ss_pred H-HHH-HHCCCCCCCEEEECCCCCHH--------HHHHHHHHHHHHHHC----CEEEEECCCCCHHHHCCHHHHHHHHCC Q ss_conf 9-999-72013678438961688135--------777776199999758----989993899871432158999986325 Q gi|254780649|r 104 T-ILQ-VKKHNKSVNFVWIMGADNIK--------SFHQWHHWKRIVTTV----PIAIIDRFDVTFNYISSPMAKTFEYAR 169 (216) Q Consensus 104 t-L~~-lk~~~p~~~l~fiiG~D~l~--------~l~~W~~~~~ll~~~----~iiV~~R~g~~~~~~~~~~~~~~~~~~ 169 (216) . +.+ +++.|.-. .||+|-|-.- .|-.=+..+++++.. .|-++.=++... +. T Consensus 271 allhAiirkN~Gct--hfiVGRDHAG~g~~~~g~~fY~p~~Aq~~~~~~~~el~I~~v~~~~~~Y-----------~~-- 335 (511) T 1g8f_A 271 AVWHAIIRKNYGAS--HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTY-----------LP-- 335 (511) T ss_dssp HHHHHHHHHHTTCS--EEECCTTTTCCCBCTTSCBSSCTTHHHHHHHHTHHHHCSEEECCCCEEE-----------EG-- T ss_pred HHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCEEEE-----------EC-- T ss_conf 99988888755995--4786787778887765656778567789998553122873122450499-----------61-- Q ss_pred CCHHHHHHHHHCCCCEEEEEE------CCCCCCCHHHHHHHHHCCCCC Q ss_conf 881233454205898099980------746886889999999879685 Q gi|254780649|r 170 LDESLSHILCTTSPPSWLFIH------DRHHIISSTAIRKKIIEQDNT 211 (216) Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~------~~~~~ISST~IR~~l~~~~~i 211 (216) . -..+...+ .....||.|++|++|++|+.| T Consensus 336 -----------~-~~~~~~~~~~~~~~~~~~~iSGtelr~~L~~G~~i 371 (511) T 1g8f_A 336 -----------D-EDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEI 371 (511) T ss_dssp -----------G-GTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCC T ss_pred -----------C-CCCEEECCCCCCCCCCEEEECHHHHHHHHHCCCCC T ss_conf -----------7-88378657789986653700799999999776988 No 38 >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Probab=97.28 E-value=0.0054 Score=36.37 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=83.1 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-----CCCCCCH Q ss_conf 8998277897133899999999998629----988999975899875556688999999998631047-----5321342 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLN----LDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN-----PRIRITA 91 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~----ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~-----~~i~v~~ 91 (216) +|.-|= |=||+|.||..+.+.+++.+. ...++++..-..+.|. +-.+.+-|+.-.++++++ .++.+.. T Consensus 414 ~VvaFq-TRNp~HraHe~l~~~a~~~~~~~~~~~~~lli~plvG~~k~--gD~~~~~r~~~~~~~l~~~~~p~~~~~l~~ 490 (630) T 1x6v_B 414 AVSAFQ-LRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKD--DDVPLMWRMKQHAAVLEEGVLNPETTVVAI 490 (630) T ss_dssp EEEEEE-ESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCCCT--TSCCHHHHHHHHHHHHHTTSSCGGGEEECC T ss_pred EEEEEC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCEEECC T ss_conf 145530-48898667899999999998736666763898404578886--666758999999999985358867458603 Q ss_pred HHHHH---HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHH-------HH--HHHHHHHHHC----CEEEEECCCCCHH Q ss_conf 55310---0032899999972013678438961688135777-------77--6199999758----9899938998714 Q gi|254780649|r 92 FEAYL---NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFH-------QW--HHWKRIVTTV----PIAIIDRFDVTFN 155 (216) Q Consensus 92 ~E~~~---~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~-------~W--~~~~~ll~~~----~iiV~~R~g~~~~ 155 (216) +.... |+.-.+ +.++-.++-++. .||+|-|-. +.. -| +..+++++.. .|-++.=++.-. T Consensus 491 ~p~~mryAGPREA~--lhAiirkN~GcT-hfiVGRDHA-G~g~~~~~~~~Y~~~~a~~i~~~~~~~l~I~ii~~~e~~Y- 565 (630) T 1x6v_B 491 FPSPMMYAGPTEVQ--WHCRARMVAGAN-FYIVGRDPA-GMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAY- 565 (630) T ss_dssp BCCCCCCCHHHHHH--HHHHHHHHTTCS-EEEECSSTT-CCBCTTTCSBSSCTTHHHHHHHHCTTCTTCEEEECCCEEE- T ss_pred CCCCCCCCCHHHHH--HHHHHHHHCCCC-EEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCEEE- T ss_conf 67554667808999--999999977998-364688878-9887776767778467899998382225845898051489- Q ss_pred HHCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEE----CCCCCCCHHHHHHHHHCCCCC Q ss_conf 32158999986325881233454205898099980----746886889999999879685 Q gi|254780649|r 156 YISSPMAKTFEYARLDESLSHILCTTSPPSWLFIH----DRHHIISSTAIRKKIIEQDNT 211 (216) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~ISST~IR~~l~~~~~i 211 (216) +. .. ..+...+ .....||.|+||++|++|+.+ T Consensus 566 ----------c~-------------~c-~~~~~~~~~~~~~~~~iSGt~lR~~L~~G~~p 601 (630) T 1x6v_B 566 ----------NK-------------KK-KRMDYYDSEHHEDFEFISGTRMRKLAREGQKP 601 (630) T ss_dssp ----------ET-------------TT-TEEEECCSTTGGGEECCCHHHHHHHHHTTCCC T ss_pred ----------EC-------------CC-CEEEECCCCCCCCEECCCHHHHHHHHHCCCCC T ss_conf ----------75-------------67-80640578997671145799999999785999 No 39 >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Probab=96.96 E-value=0.0099 Score=34.83 Aligned_cols=93 Identities=11% Similarity=0.038 Sum_probs=46.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCHHHHHH---HH Q ss_conf 7789713389999999999862998899997589987555668899999999863104----7532134255310---00 Q gi|254780649|r 26 GGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK----NPRIRITAFEAYL---NH 98 (216) Q Consensus 26 GGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~----~~~i~v~~~E~~~---~~ 98 (216) --|=||+|.||..+...+.+... +-|++.|. ....+ ..... ..|..-+..++. ..++.+..+.... ++ T Consensus 169 fqTRNp~HraHe~~~~~~~~~~~-~~lli~~v-~g~~~--~~~~~-~~~~~~~~~~~~~y~p~~~v~l~~l~~~~r~aGp 243 (552) T 3cr8_A 169 WQARQPMHRAQYEFCLKSAIENE-ANLLLHPQ-VGGDI--TEAPA-YFGLVRSFLAIRDRFPAATTQLSLLPAPPPEASG 243 (552) T ss_dssp ECCSSCCCHHHHHHHHHHHHHTT-CEEEECCB-CCCCT--TTCTT-HHHHHHHHHHHGGGSCGGGEEECBBCSCCCCSCS T ss_pred EECCCCCCHHHHHHHHHHHHHCC-CCEEEECC-CCCCC--CCCCH-HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC T ss_conf 42268997789999999998548-86676034-57776--66646-9999999999986467664477124776566760 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCH Q ss_conf 3289999997201367843896168813 Q gi|254780649|r 99 TETFHTILQVKKHNKSVNFVWIMGADNI 126 (216) Q Consensus 99 syT~dtL~~lk~~~p~~~l~fiiG~D~l 126 (216) .-. .+.++-.++-+++ .||+|-|-. T Consensus 244 rEa--ilhAiirkN~Gct-hfiVGRDHA 268 (552) T 3cr8_A 244 RAL--LLRAIVARNFGCS-LLIAGGEHQ 268 (552) T ss_dssp HHH--HHHHHHHHHHTCS-EEEC----- T ss_pred HHH--HHHHHHHHHCCCC-CCEECCCCC T ss_conf 777--7777888746887-622797777 No 40 >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xmp_A* Probab=84.10 E-value=2.1 Score=21.44 Aligned_cols=100 Identities=6% Similarity=0.166 Sum_probs=54.2 Q ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-CCCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 988999975899875556688999999998631-04753---21342553100032899999972013678438961688 Q gi|254780649|r 49 LDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL-IKNPR---IRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGAD 124 (216) Q Consensus 49 ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~-~~~~~---i~v~~~E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D 124 (216) -+++.++|.+..|........+..++....+.. ++... +.+..++-..+...-++.+..+++.+|+..|+++ |.. T Consensus 193 ~~k~~vIpngID~~~~~n~~~~~~~~~~~~~~~~i~~~~~iil~vGr~~~~Kg~~~li~a~~~l~~~~p~~~l~iv-G~~ 271 (416) T 2x6q_A 193 RNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLV-GVM 271 (416) T ss_dssp TTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEE-ECC T ss_pred CCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHCCCHHHHHHHHHHHHHCCCCEEEEE-ECC T ss_conf 0358999389584011256899999999999809498991899980470311873899999999986899679999-527 Q ss_pred C-------------HHHHH---------HH-----HHHHHHHHHCCEEEEEC Q ss_conf 1-------------35777---------77-----61999997589899938 Q gi|254780649|r 125 N-------------IKSFH---------QW-----HHWKRIVTTVPIAIIDR 149 (216) Q Consensus 125 ~-------------l~~l~---------~W-----~~~~~ll~~~~iiV~~R 149 (216) . +..+. .+ .+...+++.++++|.+- T Consensus 272 ~~~~~~~~~~~~~~l~~l~~~~~i~~~v~~~~~~~~~~~~~~~~adi~v~pS 323 (416) T 2x6q_A 272 AHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMS 323 (416) T ss_dssp CTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECC T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCC T ss_conf 8778065799999999999866982499989999899999999652234555 No 41 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Probab=70.80 E-value=5.4 Score=19.06 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=25.3 Q ss_pred HHEEECCCCCCCCEEEEECCCCCCCCHHHH-HHHHHHHHHCCCCEEEEEECCC Q ss_conf 320216778998789982778971338999-9999999862998899997589 Q gi|254780649|r 8 QDIMRMPKVEPGMKIGLFGGNFNPPHHGHI-EIAQIAIKKLNLDQLWWIITPF 59 (216) Q Consensus 8 ~~~~~~p~~~~~mkIgifGGSFdPiH~gHl-~ia~~~~~~l~ld~v~~ips~~ 59 (216) +++.+--+.....||||+|| |-| .|.-.+.+++++.-+.+-|... T Consensus 13 ~~~~~~~~~~~~k~IgIlG~-------GQLg~ml~~aA~~LGi~v~vld~~~~ 58 (403) T 3k5i_A 13 ENLYFQGHMWNSRKVGVLGG-------GQLGRMLVESANRLNIQVNVLDADNS 58 (403) T ss_dssp --------CCSCCEEEEECC-------SHHHHHHHHHHHHHTCEEEEEESTTC T ss_pred CCEEECCCCCCCCEEEEECC-------CHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 33022264378988999868-------79999999999978998999968999 No 42 >2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} Probab=69.90 E-value=3 Score=20.53 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.1 Q ss_pred CEEEEECCCCCCCCHHHHH-HHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 7899827789713389999-9999998629988999975899875 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIE-IAQIAIKKLNLDQLWWIITPFNSVK 63 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~-ia~~~~~~l~ld~v~~ips~~~p~K 63 (216) |+|||+|| |-+. |.-.+.+.+++.-+.+-|.+..|.. T Consensus 2 ~tigIlG~-------GqL~~ml~~aAk~lGi~v~v~d~~~~~pa~ 39 (365) T 2z04_A 2 LTVGILGG-------GQLGWMTILEGRKLGFKFHVLEDKENAPAC 39 (365) T ss_dssp CEEEEECC-------SHHHHHHHHHHGGGTCEEEEECSSSSCHHH T ss_pred CEEEEECC-------CHHHHHHHHHHHHCCCEEEEEECCCCCCHH T ss_conf 89999867-------899999999999789989999569989766 No 43 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Probab=67.00 E-value=6.5 Score=18.59 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=46.1 Q ss_pred HHEEECCCCCCCCEEEEEC-CCCCCCCHHH--HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 3202167789987899827-7897133899--999999998629988999975899875556688999999998631047 Q gi|254780649|r 8 QDIMRMPKVEPGMKIGLFG-GNFNPPHHGH--IEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN 84 (216) Q Consensus 8 ~~~~~~p~~~~~mkIgifG-GSFdPiH~gH--l~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~ 84 (216) |-.|++|| ++||||++|. |+ |. ..+++.....+. .+|.++.+..+ +....+ ++.. +- T Consensus 2 ~~~~~~~~-~~p~riavl~SG~------Gsnl~aLi~~~~~~~~-~~iv~vi~~~~--------~~~~~~---A~~~-gI 61 (215) T 3da8_A 2 QEPLRVPP-SAPARLVVLASGT------GSLLRSLLDAAVGDYP-ARVVAVGVDRE--------CRAAEI---AAEA-SV 61 (215) T ss_dssp -CCEEECC-CSSEEEEEEESSC------CHHHHHHHHHSSTTCS-EEEEEEEESSC--------CHHHHH---HHHT-TC T ss_pred CCCCCCCC-CCCCEEEEEECCC------CHHHHHHHHHHCCCCC-CEEEEEEECCC--------HHHHHH---HHHC-CC T ss_conf 98763899-9988899998368------2659999996377999-77999996785--------668899---9983-99 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH Q ss_conf 53213425531000328999999720136784389616881357 Q gi|254780649|r 85 PRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKS 128 (216) Q Consensus 85 ~~i~v~~~E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~ 128 (216) |.+.++.........|--..+..+++..+ ++.+++|...+.. T Consensus 62 p~~~i~~~~~~~r~~~~~~l~~~l~~~~~--Dliv~~g~~~il~ 103 (215) T 3da8_A 62 PVFTVRLADHPSRDAWDVAITAATAAHEP--DLVVSAGFMRILG 103 (215) T ss_dssp CEEECCGGGSSSHHHHHHHHHHHHHTTCC--SEEEEEECCSCCC T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEECCHHHHCC T ss_conf 73774057889999999999999876099--9999846133468 No 44 >2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima} Probab=62.48 E-value=7.9 Score=18.09 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=37.0 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CC-CCCCCHHHHHHHHHHH Q ss_conf 9878998277897133899999999998629988999975899875-----55-6688999999998631 Q gi|254780649|r 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK-----NY-NLSSSLEKRISLSQSL 81 (216) Q Consensus 18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K-----~~-~~~~~~~~R~~m~~~~ 81 (216) .+-+||+- .|.-=.|.||+.+.+.|++.. |.|+.. -..||.. +. .+.-..+.=+++++.+ T Consensus 20 ~g~~Ig~V-PTMGaLH~GHlsLI~~A~~~~--d~vvVS-IFVNP~QF~~~eD~~~YPr~~e~D~~~l~~~ 85 (280) T 2ejc_A 20 KKKTIGFV-PTMGYLHEGHLSLVRRARAEN--DVVVVS-IFVNPTQFGPNEDYERYPRDFERDRKLLEKE 85 (280) T ss_dssp TTCCEEEE-EECSCCCHHHHHHHHHHHHHS--SEEEEE-ECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT T ss_pred CCCEEEEE-CCCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 49969998-387306599999999998638--938999-9357543567631137998858889999975 No 45 >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} Probab=60.09 E-value=4.6 Score=19.46 Aligned_cols=99 Identities=8% Similarity=0.117 Sum_probs=49.6 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 78998277897133899999999998629988999975899875556688999999998631047532134255310003 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHT 99 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~~~s 99 (216) ||--++..+|-- ...+...+.....=.+|.+||+...+... . ...+..+.++..-.+.|..++.... T Consensus 2 Mk~l~L~S~~~~----~~~~~~~~~~~~~g~ki~~IPTAs~~~~~-----~--~~~~~~~~~f~~lG~~v~~ldl~~~-- 68 (206) T 3l4e_A 2 MKNLFLTSSFKD----VVPLFTEFESNLQGKTVTFIPTASTVEEV-----T--FYVEAGKKALESLGLLVEELDIATE-- 68 (206) T ss_dssp CCEEEEESCGGG----CHHHHHHHSCCCTTCEEEEECGGGGGCSC-----C--HHHHHHHHHHHHTTCEEEECCTTTS-- T ss_pred HHHHEEHHCCCC----HHHHHHHHHHHCCCCEEEEEECCCCCCCH-----H--HHHHHHHHHHHHCCCEEEEEECCCC-- T ss_conf 158400444534----39999999754389879999289888764-----4--8999999999987997899855479-- Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 289999997201367843896168813577777619 Q gi|254780649|r 100 ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHW 135 (216) Q Consensus 100 yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~ 135 (216) ..-+....+ .+++.+|+-|-|++.-+..|++. T Consensus 69 ~~~~~~~~l----~~ad~I~~~GGnt~~l~~~l~~t 100 (206) T 3l4e_A 69 SLGEITTKL----RKNDFIYVTGGNTFFLLQELKRT 100 (206) T ss_dssp CHHHHHHHH----HHSSEEEECCSCHHHHHHHHHHH T ss_pred CHHHHHHHH----HCCCEEEECCCCHHHHHHHHHHC T ss_conf 979999999----76999998898799999999868 No 46 >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Probab=59.25 E-value=8.4 Score=17.95 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=22.5 Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHHHH--CCCCEEEEE Q ss_conf 89982778971----338999999999986--299889999 Q gi|254780649|r 21 KIGLFGGNFNP----PHHGHIEIAQIAIKK--LNLDQLWWI 55 (216) Q Consensus 21 kIgifGGSFdP----iH~gHl~ia~~~~~~--l~ld~v~~i 55 (216) ++.+|-| ||| +|.||+-.....+.. .+. +++++ T Consensus 64 ~~~~Y~G-~DPTa~SLHlGhLv~l~~L~~~Q~~Gh-~~i~L 102 (392) T 1y42_X 64 RIGAYVG-IDPTAPSLHVGHLLPLMPLFWMYLEGY-KAFTL 102 (392) T ss_dssp CCEEEEE-ECCCSSSCBGGGHHHHHHHHHHHHHTC-EEEEE T ss_pred CCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEE T ss_conf 9669982-368986420877999999999998799-47999 No 47 >1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Probab=58.21 E-value=6 Score=18.81 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=23.5 Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHHHHCCC-CEEEEE Q ss_conf 89982778971----338999999999986299-889999 Q gi|254780649|r 21 KIGLFGGNFNP----PHHGHIEIAQIAIKKLNL-DQLWWI 55 (216) Q Consensus 21 kIgifGGSFdP----iH~gHl~ia~~~~~~l~l-d~v~~i 55 (216) ++.+|-| ||| .|.||+-.....+.-... -+++++ T Consensus 32 ~~~~y~G-~DPTa~sLHlGh~v~l~~l~~~q~~Gh~~i~l 70 (420) T 1jil_A 32 QVTLYCG-ADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70 (420) T ss_dssp CCEEEEE-ECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEE T ss_pred CCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 9579992-67898762155399999999999869917999 No 48 >1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} SCOP: c.26.1.4 PDB: 3mue_A Probab=58.11 E-value=9.5 Score=17.64 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=35.0 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC------CCCCCCHHHHHHHHHHH Q ss_conf 98789982778971338999999999986299889999758998755------56688999999998631 Q gi|254780649|r 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKN------YNLSSSLEKRISLSQSL 81 (216) Q Consensus 18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~------~~~~~~~~~R~~m~~~~ 81 (216) .+-+||+-+ |--=.|.||+.+++.|++.. |.|+ +--..||..= ..+.-+.+.=+++|+.+ T Consensus 20 ~g~~IgfVP-TMGaLH~GHlsLi~~A~~~~--~~vv-vSIFVNP~QF~~~eD~~~YPr~~e~D~~ll~~~ 85 (283) T 1iho_A 20 EGKRVALVP-TMGNLHDGHMKLVDEAKARA--DVVV-VSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR 85 (283) T ss_dssp TTCCEEEEE-ECSCCCHHHHHHHHHHHHHC--SEEE-EEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHHHHHC--CCEE-EEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHC T ss_conf 499399984-86307699999999999748--9389-999537534787144322899868888999863 No 49 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Probab=57.72 E-value=9.1 Score=17.75 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=25.1 Q ss_pred CCEEEEECCCCCC----CCHHHHHHHHHHHHHCCC-CEEEEEECCC Q ss_conf 8789982778971----338999999999986299-8899997589 Q gi|254780649|r 19 GMKIGLFGGNFNP----PHHGHIEIAQIAIKKLNL-DQLWWIITPF 59 (216) Q Consensus 19 ~mkIgifGGSFdP----iH~gHl~ia~~~~~~l~l-d~v~~ips~~ 59 (216) +-++.+|-| ||| .|.||+-.+......... -+++++.... T Consensus 35 ~~~~~~Y~G-~dPTg~sLHlGhlv~~~~l~~lq~~G~~~~~li~d~ 79 (432) T 1h3f_A 35 GRPLTVKLG-ADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDF 79 (432) T ss_dssp CSCCEEEEE-ECTTCCSCBHHHHHHHHHHHHHHHTTCEEEEEECCC T ss_pred CCCCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 999889984-678997530998999999999998899499998362 No 50 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Probab=54.73 E-value=9 Score=17.77 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=26.5 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 8971338999999999986299889999758 Q gi|254780649|r 28 NFNPPHHGHIEIAQIAIKKLNLDQLWWIITP 58 (216) Q Consensus 28 SFdPiH~gHl~ia~~~~~~l~ld~v~~ips~ 58 (216) +.+++......+.+.+.++|+|.+++++|+. T Consensus 54 ~I~~~~~~~~~Le~~L~~~fgL~~~~Vv~~~ 84 (315) T 2w48_A 54 AINYDYNENLWLEQQLKQKFGLKEAVVASSD 84 (315) T ss_dssp EECSSCCHHHHHHHHHHHHHTCSEEEEECC- T ss_pred EEECCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 9948974419999999997299889996898 No 51 >3guz_A Pantothenate synthetase; pantothenate biosynthesis, substrate binding, competitive inhibition, rossmann fold; HET: PAF; 1.67A {Escherichia coli} Probab=53.94 E-value=11 Score=17.23 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=34.0 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC------CCCCCHHHHHHHHHHH Q ss_conf 987899827789713389999999999862998899997589987555------6688999999998631 Q gi|254780649|r 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY------NLSSSLEKRISLSQSL 81 (216) Q Consensus 18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~------~~~~~~~~R~~m~~~~ 81 (216) .+.+||+-+ |--=.|.||+.+++.|++.. |.++ +--..||..=. .+.-..+.=+++|+.+ T Consensus 20 ~g~~IgfVP-TMGaLH~GHlsLI~~A~~~~--d~vv-VSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 85 (176) T 3guz_A 20 EGKRVALVP-TMGNLHDGHMKLVDEAKARA--DVVA-VSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR 85 (176) T ss_dssp TTCCEEEEE-ECSCCCGGGHHHHHHHHHTC--SEEE-EEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT T ss_pred CCCEEEEEC-CCCCHHHHHHHHHHHHHHHC--CEEE-EEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 499499983-87306599999999999759--9389-996037032466666654999807789999976 No 52 >2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Probab=53.66 E-value=11 Score=17.20 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=24.5 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHC Q ss_conf 987899827789713389999999999862 Q gi|254780649|r 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKL 47 (216) Q Consensus 18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l 47 (216) +-.||+|||||=.++..-+...|..+-+.+ T Consensus 12 ~~k~V~VF~gs~~~~~~~~~~~A~~Lg~~L 41 (215) T 2a33_A 12 KFRRICVFCGSSQGKKSSYQDAAVDLGNEL 41 (215) T ss_dssp SCSEEEEECCSSCCSSHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHH T ss_conf 685399988678995978999999999999 No 53 >3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A* Probab=51.99 E-value=11 Score=17.25 Aligned_cols=59 Identities=17% Similarity=0.374 Sum_probs=33.4 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCC-CCCCCHHHHHHHHHHH Q ss_conf 87899827789713389999999999862998899997589987-----555-6688999999998631 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV-----KNY-NLSSSLEKRISLSQSL 81 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~-----K~~-~~~~~~~~R~~m~~~~ 81 (216) +.+||+-+ |--=.|.||+.+++.|.+.. |.|+. --..||. .+. .+.-..+.=+++|+.+ T Consensus 22 g~~igfVP-TMGaLH~GHlsLI~~A~~~~--~~vvV-SIFVNP~QF~~~eD~~~YPr~le~D~~~l~~~ 86 (283) T 3ag6_A 22 GTTIGFIP-TMGALHDGHLTMVRESVSTN--DITIV-SVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283) T ss_dssp TCCEEEEE-ECSSCCHHHHHHHHHHHTTS--SEEEE-EECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH T ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHHC--CCEEE-EEEECHHHCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 99199985-88537499999999998738--97899-99877022487543100699989999999847 No 54 >3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} Probab=50.87 E-value=8.7 Score=17.85 Aligned_cols=59 Identities=20% Similarity=0.382 Sum_probs=33.5 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CC-CCCCCHHHHHHHHHHH Q ss_conf 9878998277897133899999999998629988999975899875-----55-6688999999998631 Q gi|254780649|r 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK-----NY-NLSSSLEKRISLSQSL 81 (216) Q Consensus 18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K-----~~-~~~~~~~~R~~m~~~~ 81 (216) .+.+||+-+- --=.|.||+.+++.|++. |.|+ +--..||.. +- .+.-..+.=+++|+.+ T Consensus 23 ~~~~IgfVPT-MGaLH~GHlsLI~~A~~~---~~vv-VSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 87 (285) T 3mxt_A 23 HQLSIGYVPT-MGFLHDGHLSLVKHAKTQ---DKVI-VSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN 87 (285) T ss_dssp TTCCEEEEEE-CSSCCHHHHHHHHHHTTS---SEEE-EEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT T ss_pred CCCEEEEECC-CCCHHHHHHHHHHHHHHC---CCEE-EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 5993999848-630659999999999765---9869-999836112787652346999978999999867 No 55 >1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Probab=49.11 E-value=11 Score=17.27 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=22.0 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 8998277897133899999999998629 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLN 48 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ 48 (216) +|+|||||=.+...-+.+.|+++-+.+. T Consensus 3 ~I~Vf~gs~~~~~~~~~~~a~~lg~~La 30 (191) T 1t35_A 3 TICVFAGSNPGGNEAYKRKAAELGVYMA 30 (191) T ss_dssp EEEEECCSSCCSSTHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHH T ss_conf 7999854799969689999999999999 No 56 >1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A* Probab=48.23 E-value=14 Score=16.70 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=23.4 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHH------HHHCCCCEEEE Q ss_conf 789982778971338999999999------98629988999 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIA------IKKLNLDQLWW 54 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~------~~~l~ld~v~~ 54 (216) ||.|+|--+++|+..+.-...+.. .+.+++|.||+ T Consensus 1 M~fg~f~~~~~~~~~~~~~~~~~~~e~a~~Ae~lGf~~~~~ 41 (355) T 1luc_A 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWL 41 (355) T ss_dssp CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEE T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 92578737889999799999999999999999879989997 No 57 >3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} Probab=48.03 E-value=14 Score=16.68 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=45.3 Q ss_pred HEEECCC-CCCCCEEEEECCCCCCCCH--HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 2021677-8998789982778971338--999999999986299889999758998755566889999999986310475 Q gi|254780649|r 9 DIMRMPK-VEPGMKIGLFGGNFNPPHH--GHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNP 85 (216) Q Consensus 9 ~~~~~p~-~~~~mkIgifGGSFdPiH~--gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~ 85 (216) +-|..|+ .++|-+|||.-=|.--... .=++.+....+..++ +|..-++-... ..-.+.+.+.|++-+..|+.++ T Consensus 2 ~~m~~P~~Lk~GD~I~viAPSs~~~~~~~~~~~~~~~~L~~~G~-~v~~~~~~~~~--~~~~agt~~~Ra~dl~~a~~d~ 78 (336) T 3gjz_A 2 NAMPLPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGF-HILEGSLTGRY--DYYRSGSIQERAKELNALIRNP 78 (336) T ss_dssp CCCCCCCCCCTTCEEEEECSSCCHHHHCHHHHHHHHHHHHHTTC-EEEECTTTTCC--BTTBSSCHHHHHHHHHHHHTCT T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCCCCCC--CCCCCCCHHHHHHHHHHHHHCC T ss_conf 98988999998699999958986655499999999999986899-99877520334--6756799999999999985488 Q ss_pred CC Q ss_conf 32 Q gi|254780649|r 86 RI 87 (216) Q Consensus 86 ~i 87 (216) .+ T Consensus 79 ~i 80 (336) T 3gjz_A 79 NV 80 (336) T ss_dssp TE T ss_pred CC T ss_conf 88 No 58 >2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8 Probab=46.32 E-value=11 Score=17.31 Aligned_cols=32 Identities=6% Similarity=-0.048 Sum_probs=28.2 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 89713389999999999862998899997589 Q gi|254780649|r 28 NFNPPHHGHIEIAQIAIKKLNLDQLWWIITPF 59 (216) Q Consensus 28 SFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~ 59 (216) .++++..++..+.+.+.++|+|.+++++|+.. T Consensus 86 ~~~~~~~~~~~Le~~L~~~fgL~~~~Vvp~~~ 117 (345) T 2o0m_A 86 LVMNQLLGMHQIEKEMTQYFGIQRCIVVAGDS 117 (345) T ss_dssp ---------CHHHHHHHHHHTCSEEEEESSCT T ss_pred HHHCCCCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 65152215799999999982997899948976 No 59 >3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} SCOP: c.124.1.8 Probab=45.45 E-value=10 Score=17.40 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=27.6 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 897133899999999998629988999975899 Q gi|254780649|r 28 NFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60 (216) Q Consensus 28 SFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~ 60 (216) +.|++......+.+.+.++|+|.+++++|+..+ T Consensus 5 ~I~~~~~~~~~Le~~L~~~fgL~~v~Vv~~~~~ 37 (266) T 3efb_A 5 AINYDYNENLWLEQQLKQKFGLKDVVVVSGNDE 37 (266) T ss_dssp -------CCHHHHHHHHHHHTCSEEEEECCCSC T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 991897431999999999849987999789988 No 60 >1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A Probab=43.71 E-value=16 Score=16.28 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=33.6 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----C-CCCCCCHHHHHHHHHHH Q ss_conf 8998277897133899999999998629988999975899875-----5-56688999999998631 Q gi|254780649|r 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK-----N-YNLSSSLEKRISLSQSL 81 (216) Q Consensus 21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K-----~-~~~~~~~~~R~~m~~~~ 81 (216) +||+-+ |--=.|.||+.+++.|++.. |.|+ +--..||.. + ..+.-..+.=+++|+.+ T Consensus 18 ~ig~VP-TMGaLH~GHlsLi~~A~~~~--d~vv-VSIFVNP~QF~~~eD~~~YPr~l~~D~~ll~~~ 80 (276) T 1v8f_A 18 GVGFVP-TMGYLHRGHLALVERARREN--PFVV-VSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA 80 (276) T ss_dssp CEEEEE-ECSSCCHHHHHHHHHHHHHC--SEEE-EEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT T ss_pred CEEEEC-CCCCHHHHHHHHHHHHHHHC--CCEE-EEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHC T ss_conf 899986-86517599999999999768--9789-999777766898424765899827659999858 No 61 >3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} Probab=43.09 E-value=17 Score=16.23 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=37.1 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC------CCCCCHHHHHHHHHHH Q ss_conf 9987899827789713389999999999862998899997589987555------6688999999998631 Q gi|254780649|r 17 EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY------NLSSSLEKRISLSQSL 81 (216) Q Consensus 17 ~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~------~~~~~~~~R~~m~~~~ 81 (216) ..+.+||+-+ |--=.|.||+.+++.|++.. |.|+ +--..||..=. .+.-..+.=+++|+.+ T Consensus 21 ~~~~~IgfVP-TMGaLH~GHlsLI~~A~~~~--d~vv-VSIFVNP~QF~~~eD~~~YPr~le~D~~ll~~~ 87 (264) T 3n8h_A 21 IKQQKIGFVP-TMGALHNGHISLIKKAKSEN--DVVI-VSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL 87 (264) T ss_dssp CTTSCEEEEE-ECSSCCHHHHHHHHHHHHHC--SEEE-EEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT T ss_pred HCCCEEEEEC-CCCHHHHHHHHHHHHHHHHC--CEEE-EEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHC T ss_conf 6499099981-86137699999999998749--9089-999517112687566776966577789999976 No 62 >1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Probab=42.91 E-value=8.1 Score=18.04 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=25.8 Q ss_pred ECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCC Q ss_conf 16778998789982778971338999999999986---2998899997589 Q gi|254780649|r 12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKK---LNLDQLWWIITPF 59 (216) Q Consensus 12 ~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~---l~ld~v~~ips~~ 59 (216) .|-|..+|+|+|||||+= .|.-.++..+... .+-|-++++-.+. T Consensus 158 ~l~pigkGQr~gIfgg~g----~GKt~l~~~~~~n~~~~~~~v~V~~~iGe 204 (498) T 1fx0_B 158 LLAPYRRGGKIGLFGGAG----VGKTVLIMELINNIAKAHGGVSVFGGVGE 204 (498) T ss_dssp HHSCCCTTCCEEEEECSS----SSHHHHHHHHHHHTTTTCSSCEEEEEESC T ss_pred CCCCCCCCCEEEEECCCC----CCHHHHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 314504677777455899----88789999999978875699899999643 No 63 >2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Probab=40.94 E-value=7.2 Score=18.32 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=26.0 Q ss_pred EECCCCCCCCEEEEECCCCCCCCHHHHHHHH-HHHHHCCCCEE-EEEECCC Q ss_conf 2167789987899827789713389999999-99986299889-9997589 Q gi|254780649|r 11 MRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQ-IAIKKLNLDQL-WWIITPF 59 (216) Q Consensus 11 ~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~-~~~~~l~ld~v-~~ips~~ 59 (216) =.|-|.++|+|+|||||+= .|+-.++. .+.+.-.-+.+ +++-.+. T Consensus 154 D~l~pig~Gqr~~I~g~~g----~GKt~l~~~~~~~~~~~~~~~V~~~iGe 200 (502) T 2qe7_A 154 DSMIPIGRGQRELIIGDRQ----TGKTTIAIDTIINQKGQDVICIYVAIGQ 200 (502) T ss_dssp HHSSCCBTTCBCEEEECSS----SCHHHHHHHHHHGGGSCSEEEEEEEESC T ss_pred HCCCCCCCCCEEEEECCCC----CCHHHHHHHHHHHHCCCCCEEEEEEECC T ss_conf 2356605786777556888----8777999999984215773589998554 No 64 >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Probab=40.87 E-value=11 Score=17.37 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=22.7 Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHHHH--CCCCEEEEE Q ss_conf 89982778971----338999999999986--299889999 Q gi|254780649|r 21 KIGLFGGNFNP----PHHGHIEIAQIAIKK--LNLDQLWWI 55 (216) Q Consensus 21 kIgifGGSFdP----iH~gHl~ia~~~~~~--l~ld~v~~i 55 (216) ++.+|-| ||| .|.||+-.....+.- ++ -+++++ T Consensus 32 ~~~~y~G-~DPTa~sLHlGh~v~l~~l~~fq~~G-h~~v~l 70 (432) T 2jan_A 32 PMTVYAG-FDPTAPSLHAGHLVPLLTLRRFQRAG-HRPIVL 70 (432) T ss_dssp CCEEEEE-ECCSSSSCBGGGHHHHHHHHHHHHTT-CEEEEE T ss_pred CCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCC-CEEEEE T ss_conf 9679980-68899763087799999999999879-979999 No 65 >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} Probab=39.61 E-value=15 Score=16.57 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=22.6 Q ss_pred CCEEEEECCCCCC----CCHHHHHHHHHHHHHCCC-CEEEEEE Q ss_conf 8789982778971----338999999999986299-8899997 Q gi|254780649|r 19 GMKIGLFGGNFNP----PHHGHIEIAQIAIKKLNL-DQLWWII 56 (216) Q Consensus 19 ~mkIgifGGSFdP----iH~gHl~ia~~~~~~l~l-d~v~~ip 56 (216) +-++.+|-| ||| +|.||+-.....+..... .+++++. T Consensus 44 ~~~~~vY~G-~DPT~~sLHlGhlv~l~~l~~~q~~G~~~ivLi 85 (356) T 2pid_A 44 SFPQTIYCG-FDPTADSLHVGHLLALLGLFHLQRAGHNVIALV 85 (356) T ss_dssp --CCEEEEE-ECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 798379981-578987530988999999999998699899996 No 66 >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Probab=39.28 E-value=8.7 Score=17.87 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=15.6 Q ss_pred CCCCCCCCEEEEECCCCCCCC Q ss_conf 677899878998277897133 Q gi|254780649|r 13 MPKVEPGMKIGLFGGNFNPPH 33 (216) Q Consensus 13 ~p~~~~~mkIgifGGSFdPiH 33 (216) |-|..+|+|+|||||+==+=+ T Consensus 145 l~pig~Gqr~~Ifg~~g~GKt 165 (473) T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKT 165 (473) T ss_dssp HSCEETTCEEEEECCSSSCHH T ss_pred CCCCCCCCEEEEECCCCCCHH T ss_conf 456346777455558998879 No 67 >3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ... Probab=38.97 E-value=19 Score=15.85 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=33.5 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC------CCCCCHHHHHHHHHHH Q ss_conf 87899827789713389999999999862998899997589987555------6688999999998631 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY------NLSSSLEKRISLSQSL 81 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~------~~~~~~~~R~~m~~~~ 81 (216) +.+||+-+ |--=.|.||+.+.+.|++.-+ |.|+. --..||..=. .+.-..+.=+++|+.+ T Consensus 32 g~~ig~VP-TMGaLH~GHlsLI~~A~~~~~-d~vvV-SIFVNP~QF~~~eD~~~YPr~le~D~~~l~~~ 97 (301) T 3cov_A 32 GRRVMLVP-TMGALHEGHLALVRAAKRVPG-SVVVV-SIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 97 (301) T ss_dssp TCEEEEEE-ECSCCCHHHHHHHHHHHTSTT-EEEEE-EECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT T ss_pred CCEEEEEE-CCCHHHHHHHHHHHHHHHCCC-CEEEE-EEECCCCCCCCCHHHCCCCCCHHHHHHHHHHC T ss_conf 99089996-872175999999999865279-97999-99627534787122011698817789999977 No 68 >1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri} Probab=37.60 E-value=20 Score=15.72 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=24.8 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 78998277897133899999999998629988999 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW 54 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ 54 (216) ||+|||.-..+|.. ..+.+|+. .+++++|.+|+ T Consensus 1 M~~gi~~~p~~~~~-~~~~~a~~-ae~~Gf~~~~~ 33 (327) T 1z69_A 1 MKFGIEFVPSDPAL-KIAYYAKL-SEQQGFDHVWI 33 (327) T ss_dssp CEEEEEECTTSCHH-HHHHHHHH-HHHTTCSEEEE T ss_pred CEEEEEECCCCCHH-HHHHHHHH-HHHCCCCEEEE T ss_conf 94579818989799-99999999-99849999998 No 69 >1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.129.1.1 Probab=37.25 E-value=21 Score=15.69 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=20.6 Q ss_pred CE-EEEECCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 78-998277897133899999999998629 Q gi|254780649|r 20 MK-IGLFGGNFNPPHHGHIEIAQIAIKKLN 48 (216) Q Consensus 20 mk-IgifGGSFdPiH~gHl~ia~~~~~~l~ 48 (216) || |++||||-..+..-+...|..+-+.+. T Consensus 1 mk~V~Vfgss~~~~~~~~~~~a~~lG~~La 30 (171) T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLA 30 (171) T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 988999921789989889999999999999 No 70 >1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel; HET: MPO; 2.00A {Methanothermobacterthermautotrophicus} SCOP: c.1.16.3 Probab=37.23 E-value=21 Score=15.69 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=20.9 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 78998277897133899999999998629988999 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW 54 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ 54 (216) ||+||+-....|+..- +.+++. .+.+++|.||+ T Consensus 1 Mkfg~~~~~~~~~~~~-~~~a~~-Ae~~Gf~~~w~ 33 (321) T 1f07_A 1 MKFGIEFVPNEPIEKI-VKLVKL-AEDVGFEYAWI 33 (321) T ss_dssp CEEEEEECSSSCHHHH-HHHHHH-HHHTTCCEEEE T ss_pred CEEEEEECCCCCHHHH-HHHHHH-HHHCCCCEEEE T ss_conf 9369980798989999-999999-99849999998 No 71 >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal aldimine, schiff base; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Probab=37.22 E-value=21 Score=15.69 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=26.0 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH Q ss_conf 889999758998755566889999999986310475321342 Q gi|254780649|r 50 DQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITA 91 (216) Q Consensus 50 d~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~ 91 (216) ..++++|++.||- ....+.++|.+++..+.++.-+.++| T Consensus 174 ~~i~~~~~p~NPT---G~~~s~~~~~~l~~~a~~~~~~ii~D 212 (397) T 3fsl_A 174 SIVLLHPCCHNPT---GADLTNDQWDAVIEILKARELIPFLD 212 (397) T ss_dssp CEEEECSSSCTTT---CCCCCHHHHHHHHHHHHHTTCEEEEE T ss_pred EEEEEECCCCCCC---CCCCCHHHHHHHHHHHHHCCEEEEEE T ss_conf 0899957999989---83689999999999986473589841 No 72 >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Probab=36.89 E-value=21 Score=15.66 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=24.9 Q ss_pred CCCEEEEECCCCCC----CCHHHHHHHHHHH---HHCCCCEEEEEEC Q ss_conf 98789982778971----3389999999999---8629988999975 Q gi|254780649|r 18 PGMKIGLFGGNFNP----PHHGHIEIAQIAI---KKLNLDQLWWIIT 57 (216) Q Consensus 18 ~~mkIgifGGSFdP----iH~gHl~ia~~~~---~~l~ld~v~~ips 57 (216) .+-+..||-| |.| +|.||...+.... +.++.+ +++..+ T Consensus 88 ~g~pf~v~tG-~~PsSG~~HLGh~~~~~~~~~lQd~~~~~-~~i~ia 132 (451) T 3foc_A 88 KGHPIYIYTG-RGPSSGALHLGHLLPFIFTKYLQDAFKCY-VVIQIT 132 (451) T ss_dssp TTCCEEEEEE-ECCCSSCCBHHHHHHHHHHHHHHHHHTCE-EEEEEC T ss_pred CCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCC-EEEEEC T ss_conf 5998499979-88998975399999999999998757997-899972 No 73 >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Probab=35.66 E-value=14 Score=16.61 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=22.9 Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHHHH--CCCCEEEEE Q ss_conf 89982778971----338999999999986--299889999 Q gi|254780649|r 21 KIGLFGGNFNP----PHHGHIEIAQIAIKK--LNLDQLWWI 55 (216) Q Consensus 21 kIgifGGSFdP----iH~gHl~ia~~~~~~--l~ld~v~~i 55 (216) ++.+|-| ||| .|.||+-....++.- ++. +++++ T Consensus 30 ~~~~y~G-~DPTa~sLHlGhlv~l~~l~~fq~~Gh-~~i~l 68 (419) T 2ts1_A 30 RVTLYCG-FDPTADSLHIGHLATILTMRRFQQAGH-RPIAL 68 (419) T ss_dssp CCEEEEE-ECCSSSSCBGGGHHHHHHHHHHHHTTC-EEEEE T ss_pred CCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEE T ss_conf 8569993-678987530877999999999998699-08999 No 74 >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 Probab=35.57 E-value=22 Score=15.53 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=26.0 Q ss_pred CCCEEEEE--CCCCCCC-CHHHHH----HHHHHHHHCCCCEEEEEEC Q ss_conf 98789982--7789713-389999----9999998629988999975 Q gi|254780649|r 18 PGMKIGLF--GGNFNPP-HHGHIE----IAQIAIKKLNLDQLWWIIT 57 (216) Q Consensus 18 ~~mkIgif--GGSFdPi-H~gHl~----ia~~~~~~l~ld~v~~ips 57 (216) ++-||-|| .|+|-|. +.-|+- -+..+.+..+.|+|+.+-. T Consensus 42 ~~KkVvl~~vPGAFTptCs~~hlP~y~~~~~~f~k~~gvd~I~cisv 88 (182) T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITN 88 (182) T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEES T ss_pred CCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEEEEC T ss_conf 99849999737776986783037568888899998569852689965 No 75 >2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Probab=35.54 E-value=9.4 Score=17.67 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=26.1 Q ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEECCC Q ss_conf 67789987899827789713389999999999862---998899997589 Q gi|254780649|r 13 MPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL---NLDQLWWIITPF 59 (216) Q Consensus 13 ~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l---~ld~v~~ips~~ 59 (216) |-|..+|+|+|||||+ =.|+-.++..+.... +-|-++++-++. T Consensus 147 l~pi~~Gqr~~Ifg~~----G~GKt~l~~~~~~n~~~~~~~v~V~~~iGe 192 (482) T 2ck3_D 147 LAPYAKGGKIGLFGGA----GVGKTVLIMELINNVAKAHGGYSVFAGVGE 192 (482) T ss_dssp HSCEETTCEEEEEECT----TSSHHHHHHHHHHHTTTTCSSEEEEEEESC T ss_pred CCCCCCCCEEEEECCC----CCCHHHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 5775577876776689----998899999999867650799899999721 No 76 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=34.58 E-value=17 Score=16.11 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=20.2 Q ss_pred EECCCCCCCCEEEEEC-CCCCCCCHHHHHHHH Q ss_conf 2167789987899827-789713389999999 Q gi|254780649|r 11 MRMPKVEPGMKIGLFG-GNFNPPHHGHIEIAQ 41 (216) Q Consensus 11 ~~~p~~~~~mkIgifG-GSFdPiH~gHl~ia~ 41 (216) |.+|....+.||||.| |.+ -..|+..+. T Consensus 2 ~~~~~~~~~irv~iiG~G~~---g~~h~~~~~ 30 (315) T 3c1a_A 2 MSIPANNSPVRLALIGAGRW---GKNYIRTIA 30 (315) T ss_dssp -------CCEEEEEEECTTT---TTTHHHHHH T ss_pred CCCCCCCCCEEEEEECCCHH---HHHHHHHHH T ss_conf 89999999938999999399---999999997 No 77 >2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Probab=33.92 E-value=23 Score=15.37 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 899999999998629988999975899 Q gi|254780649|r 34 HGHIEIAQIAIKKLNLDQLWWIITPFN 60 (216) Q Consensus 34 ~gHl~ia~~~~~~l~ld~v~~ips~~~ 60 (216) .-|+.+.+.+.++|+|.+++++|+..+ T Consensus 7 ~~~~eLe~~L~~~fgLk~~~Vvp~~~~ 33 (264) T 2r5f_A 7 GLHLELETRLQKMYGIRQVIVVEATEP 33 (264) T ss_dssp CTTHHHHHHHHHHHTCSEEEEECCSST T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 468999999999839998999689999 No 78 >3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis} Probab=33.62 E-value=24 Score=15.34 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=34.0 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CC-CCCCCHHHHHHHHHHH Q ss_conf 878998277897133899999999998629988999975899875-----55-6688999999998631 Q gi|254780649|r 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK-----NY-NLSSSLEKRISLSQSL 81 (216) Q Consensus 19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K-----~~-~~~~~~~~R~~m~~~~ 81 (216) +.+||+-+ |--=.|.||+.+++.|.+.. |.|+. --.+||.. +. .+.-..+.=+++|+.+ T Consensus 42 g~~IgfVP-TMGaLH~GHlsLI~~A~~~~--d~vvV-SIFVNP~QF~~~eD~~~YPr~le~D~~~l~~~ 106 (314) T 3inn_A 42 GKKIGFVP-TMGYLHKGHLELVRRARVEN--DVTLV-SIFVNPLQFGANEDLGRYPRDLERDAGLLHDA 106 (314) T ss_dssp TCCEEEEE-ECSSCCHHHHHHHHHHHHHC--SEEEE-EECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT T ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHHC--CEEEE-EEEECCCCCCCCCHHHHCCCCHHHHHHHHHHC T ss_conf 99599986-86207699999999998749--94999-99777766788730745899867858999866 No 79 >2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.73A {Agrobacterium tumefaciens str} Probab=29.74 E-value=28 Score=14.96 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=23.2 Q ss_pred CCCCEEEEEC-C--CCCCCCHH---HH----HHHHHH--HHHCCCCEEEE Q ss_conf 9987899827-7--89713389---99----999999--98629988999 Q gi|254780649|r 17 EPGMKIGLFG-G--NFNPPHHG---HI----EIAQIA--IKKLNLDQLWW 54 (216) Q Consensus 17 ~~~mkIgifG-G--SFdPiH~g---Hl----~ia~~~--~~~l~ld~v~~ 54 (216) .++|+.|||. | +-||.+-. +- ++++.+ .+.+++|.+|+ T Consensus 19 ~~~M~fgif~~~~~~~~~~~g~~~~~~~~~~~~~e~a~~AE~lGfd~~w~ 68 (376) T 2i7g_A 19 FQGMELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGL 68 (376) T ss_dssp --CCEEEEEECCBCCSSCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred HCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 53886889874444778989988999999999999999999859989995 No 80 >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C- terminal domain, open alpha-beta structure.; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Probab=29.69 E-value=28 Score=14.96 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=24.6 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC Q ss_conf 8899997589987555668899999999863104753213 Q gi|254780649|r 50 DQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89 (216) Q Consensus 50 d~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v 89 (216) -++++++++.||-- ...+.+++.++++.+.++.-+.| T Consensus 163 ~k~i~l~~P~NPTG---~~~s~~~~~~l~~~a~~~~~~ii 199 (390) T 1d2f_A 163 CKIMLLCSPQNPTG---KVWTCDELEIMADLCERHGVRVI 199 (390) T ss_dssp EEEEEEESSCTTTC---CCCCTTHHHHHHHHHHHTTCEEE T ss_pred CEEEEECCCCCCCC---EEECHHHHHHHHHHHHHCEEEEE T ss_conf 27999899989876---64039999998776765304899 No 81 >2ck3_A ATP synthase alpha chain heart isoform; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Probab=29.35 E-value=12 Score=17.02 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=15.2 Q ss_pred ECCCCCCCCEEEEECCCCCC Q ss_conf 16778998789982778971 Q gi|254780649|r 12 RMPKVEPGMKIGLFGGNFNP 31 (216) Q Consensus 12 ~~p~~~~~mkIgifGGSFdP 31 (216) .|-|.++|+|+|||||+==+ T Consensus 155 ~l~pig~Gqr~~i~g~~g~G 174 (510) T 2ck3_A 155 SLVPIGRGQRELIIGDRQTG 174 (510) T ss_dssp HHSCCBTTCBCEEEESTTSS T ss_pred CCCCCCCCCEEEEECCCCCC T ss_conf 35677778734456789999 No 82 >3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114} Probab=28.95 E-value=29 Score=14.88 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=24.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 78971338999999999986299889999758 Q gi|254780649|r 27 GNFNPPHHGHIEIAQIAIKKLNLDQLWWIITP 58 (216) Q Consensus 27 GSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~ 58 (216) -+|-|+. -+++.+.+.++|+|.+++++|+. T Consensus 2 ~~~hp~~--~~eLE~~L~~~fgLk~~~Vv~~~ 31 (267) T 3kv1_A 2 NAFHPVY--SVQLEQKLVEKFNLKRALISLDQ 31 (267) T ss_dssp ---------CHHHHHHHHHHHTCSEEEEECCC T ss_pred CCCCCCC--HHHHHHHHHHHHCCCEEEEECCC T ss_conf 8878845--89999999998499889996899 No 83 >1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Probab=28.24 E-value=12 Score=16.95 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=22.3 Q ss_pred EECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC Q ss_conf 2167789987899827789713389999999999862 Q gi|254780649|r 11 MRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL 47 (216) Q Consensus 11 ~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l 47 (216) =.|-|..+|+|+|||||+ -.|+-.++......- T Consensus 155 D~l~pi~~Gqr~~I~g~~----g~GKt~l~~~~~~~~ 187 (507) T 1fx0_A 155 DAMIPVGRGQRELIIGDR----QTGKTAVATDTILNQ 187 (507) T ss_dssp TTTSCCBTTCBCBEEESS----SSSHHHHHHHHHHTC T ss_pred HCCCCCCCCCEEEEECCC----CCCHHHHHHHHHHHH T ss_conf 310231368677756588----887368899876643 No 84 >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Probab=28.20 E-value=21 Score=15.65 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=20.1 Q ss_pred EECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH Q ss_conf 216778998789982778971338999999999986 Q gi|254780649|r 11 MRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKK 46 (216) Q Consensus 11 ~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~ 46 (216) |+|+.....||||+.|-= ..|. .||..+.+. T Consensus 1 ~~~~~~~~~m~Ig~IG~G----~mG~-~ia~~L~~~ 31 (306) T 3l6d_A 1 MSLSDESFEFDVSVIGLG----AMGT-IMAQVLLKQ 31 (306) T ss_dssp -CCCCCCCSCSEEEECCS----HHHH-HHHHHHHHT T ss_pred CCCCCCCCCCCEEEEEHH----HHHH-HHHHHHHHC T ss_conf 998888889958998579----9999-999999977 No 85 >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Probab=28.12 E-value=20 Score=15.76 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=15.9 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 78998277897133899999999998629988999 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW 54 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ 54 (216) |||||.||+= ..| ..+|..+.+. + -+|.+ T Consensus 1 MkI~iigGaG---~iG-~alA~~la~~-G-~~V~l 29 (212) T 1jay_A 1 MRVALLGGTG---NLG-KGLALRLATL-G-HEIVV 29 (212) T ss_dssp CEEEEETTTS---HHH-HHHHHHHHTT-T-CEEEE T ss_pred CEEEEEECCH---HHH-HHHHHHHHHC-C-CEEEE T ss_conf 9799994845---999-9999999988-9-98999 No 86 >1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Probab=27.85 E-value=30 Score=14.77 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=23.9 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9878998277897133899999999998629 Q gi|254780649|r 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLN 48 (216) Q Consensus 18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ 48 (216) +-.||+|||||=.+...-+...|..+-+.+. T Consensus 8 k~k~V~VF~gS~~~~~~~~~~~a~~lG~~La 38 (216) T 1ydh_A 8 RFRKICVFCGSHSGHREVFSDAAIELGNELV 38 (216) T ss_dssp SCSEEEEECCSCCCSSHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHH T ss_conf 6853999875789969389999999999999 No 87 >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Probab=26.48 E-value=24 Score=15.36 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=21.9 Q ss_pred CHHHEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 02320216778998789982778971338999999999986299889999 Q gi|254780649|r 6 SLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWI 55 (216) Q Consensus 6 ~~~~~~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~i 55 (216) +++.-|-+. +|||.|+|||= ..|.- +++.+.+. + .+|..+ T Consensus 12 ~~~~~~~~~----~MkIlI~GasG---~iG~~-lv~~Ll~~-g-~~V~~l 51 (236) T 3e8x_A 12 SGRENLYFQ----GMRVLVVGANG---KVARY-LLSELKNK-G-HEPVAM 51 (236) T ss_dssp -------------CCEEEEETTTS---HHHHH-HHHHHHHT-T-CEEEEE T ss_pred CCCCCCCCC----CCEEEEECCCC---HHHHH-HHHHHHHC-C-CEEEEE T ss_conf 996445779----99089999988---89999-99999978-5-989999 No 88 >1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Probab=25.73 E-value=16 Score=16.29 Aligned_cols=32 Identities=3% Similarity=0.056 Sum_probs=18.6 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 78438961688135777776199999758989993 Q gi|254780649|r 114 SVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIID 148 (216) Q Consensus 114 ~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~ 148 (216) +..-+.++|++.-.+- .-|++.+...++-+.. T Consensus 115 ~~~~vgvlaT~~T~~s---~~y~~~l~~~~~~~~~ 146 (228) T 1jfl_A 115 GFKKAGLLATTGTIVS---GVYEKEFSKYGVEIMT 146 (228) T ss_dssp TCSEEEEECCHHHHHH---THHHHHHHHTTCEEEC T ss_pred CCCCEEEEECCCCCCC---CHHHHHHHHCCCCEEE T ss_conf 8871389853762542---0799999983996363 No 89 >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Probab=25.63 E-value=33 Score=14.53 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=20.1 Q ss_pred EEEEECCCCCC---CCHHHHHHHHHHHHH--CCCCEEEEEEC Q ss_conf 89982778971---338999999999986--29988999975 Q gi|254780649|r 21 KIGLFGGNFNP---PHHGHIEIAQIAIKK--LNLDQLWWIIT 57 (216) Q Consensus 21 kIgifGGSFdP---iH~gHl~ia~~~~~~--l~ld~v~~ips 57 (216) +..+|-| |+| +|.||+.....+... .+. +++++++ T Consensus 32 ~~~vy~G-~~PTg~lHLGh~v~~~~~~~lq~~G~-~~~~~i~ 71 (323) T 2cyb_A 32 KPRAYVG-YEPSGEIHLGHMMTVQKLMDLQEAGF-EIIVLLA 71 (323) T ss_dssp CCEEEEE-ECCCSCCBHHHHHHHHHHHHHHHTTC-EEEEEEC T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEC T ss_conf 9889982-69998467999999999999997799-0899934 No 90 >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Probab=25.46 E-value=24 Score=15.32 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=17.3 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 789982778971338999999999986299889999 Q gi|254780649|r 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWI 55 (216) Q Consensus 20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~i 55 (216) |||.|+|||=. .|.- +++.+.+. + -+|..+ T Consensus 1 MkIlV~GatG~---iG~~-l~~~L~~~-G-~~V~~~ 30 (221) T 3ew7_A 1 MKIGIIGATGR---AGSR-ILEEAKNR-G-HEVTAI 30 (221) T ss_dssp CEEEEETTTSH---HHHH-HHHHHHHT-T-CEEEEE T ss_pred CEEEEECCCCH---HHHH-HHHHHHHC-C-CEEEEE T ss_conf 94999998818---9999-99999978-6-989999 No 91 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Probab=24.69 E-value=34 Score=14.42 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=27.8 Q ss_pred EECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 216778998789982778971338999999999986299889999758998755 Q gi|254780649|r 11 MRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKN 64 (216) Q Consensus 11 ~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~ 64 (216) |..|......||+|.||.- .| ..++. +.+.+++.-+.+-|.+.+|-.. T Consensus 3 ~~~~~~~~~~kvlIiG~Gq----lg-r~~a~-Aak~lG~~v~~~~~~~~~p~~~ 50 (391) T 1kjq_A 3 LGTALRPAATRVMLLGSGE----LG-KEVAI-ECQRLGVEVIAVDRYADAPAMH 50 (391) T ss_dssp BCCTTSTTCCEEEEESCSH----HH-HHHHH-HHHTTTCEEEEEESSTTCGGGG T ss_pred CCCCCCCCCCEEEEECCCH----HH-HHHHH-HHHHCCCEEEEEECCCCCCHHH T ss_conf 6889999998999989789----99-99999-9998799899997999983676 No 92 >2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Probab=24.06 E-value=15 Score=16.54 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=25.0 Q ss_pred ECCCCCCCCEEEEECCCCCCCCHHHHHHHHH-HHHHCCCC-EEEEEECCC Q ss_conf 1677899878998277897133899999999-99862998-899997589 Q gi|254780649|r 12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQI-AIKKLNLD-QLWWIITPF 59 (216) Q Consensus 12 ~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~-~~~~l~ld-~v~~ips~~ 59 (216) .|-|..+|+|+|||||+ -.|+-.++.. +++.-.-+ -++++-.+. T Consensus 168 ~l~pig~Gqr~~I~g~~----g~GKt~l~~~~~~~~~~~~~~~V~~~iGe 213 (515) T 2r9v_A 168 SMIPIGRGQRELIIGDR----QTGKTAIAIDTIINQKGQGVYCIYVAIGQ 213 (515) T ss_dssp HHSCEETTCBEEEEEET----TSSHHHHHHHHHHTTTTTTEEEEEEEESC T ss_pred CCCCCCCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 23552468678886798----88867999999886520487799971341 No 93 >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Probab=23.97 E-value=35 Score=14.34 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=21.1 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99889999758998755566889999999986310 Q gi|254780649|r 48 NLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI 82 (216) Q Consensus 48 ~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~ 82 (216) +-..+++++++.||- ....+.++|.++++.+. T Consensus 188 ~~~~~~i~~~p~NPT---G~~~s~~~~~~l~~~~~ 219 (430) T 2x5f_A 188 KDKVIMILNYPNNPT---GYTPTHKEVTTIVEAIK 219 (430) T ss_dssp SSEEEEEECSSCTTT---CCCCCHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCC---CCCCCCHHHHHHHHHHH T ss_conf 885899808998999---87877125899999999 No 94 >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Probab=23.18 E-value=37 Score=14.25 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=24.9 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 88999975899875556688999999998631047532 Q gi|254780649|r 50 DQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRI 87 (216) Q Consensus 50 d~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i 87 (216) .++++++++.||- ....+.++|.++++.|.++.-+ T Consensus 165 ~k~i~l~nP~NPT---G~v~s~e~~~~i~~~a~~~~~~ 199 (399) T 1c7n_A 165 NKALLFCSPHNPV---GRVWKKDELQKIKDIVLKSDLM 199 (399) T ss_dssp EEEEEEESSBTTT---TBCCCHHHHHHHHHHHHHSSCE T ss_pred CEEEEECCCCCCC---CHHCCHHHHHHHHHCCCCCEEE T ss_conf 7599979895977---8317899999988412454368 No 95 >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Probab=22.91 E-value=37 Score=14.22 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=32.4 Q ss_pred ECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 1677899878998277897133899999999998629988999975899 Q gi|254780649|r 12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60 (216) Q Consensus 12 ~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~ 60 (216) .|-|..+|+|+|||||+ =.|+-.++..+.+..+-|.+++.-.+.. T Consensus 150 ~l~pigkGQR~~Ifg~~----G~GKT~Ll~~i~~~~~~dv~V~~~iGer 194 (438) T 2dpy_A 150 ALLTVGRGQRMGLFAGS----GVGKSVLLGMMARYTRADVIVVGLIGER 194 (438) T ss_dssp HHSCCBTTCEEEEEECT----TSSHHHHHHHHHHHSCCSEEEEEEESCC T ss_pred CCCCCCCCCEEEECCCC----CCCCHHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 23331467632532689----9980398777776226777179996210 No 96 >3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D Probab=22.60 E-value=15 Score=16.45 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=23.4 Q ss_pred HHEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH Q ss_conf 320216778998789982778971338999999999986 Q gi|254780649|r 8 QDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKK 46 (216) Q Consensus 8 ~~~~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~ 46 (216) +.+-.|-+..+|+|+|||||+.=+-. .++....+. T Consensus 136 k~ID~l~pigrGQr~~I~gg~GvGKt----~L~~~i~r~ 170 (464) T 3gqb_B 136 STIDVMNTLVRGQKLPIFSGSGLPAN----EIAAQIARQ 170 (464) T ss_dssp HHHHTTSCCBTTCBCCEEEETTSCHH----HHHHHHHHH T ss_pred CEEEECCCCCCCCEEECCCCCCCCHH----HHHHHHHHH T ss_conf 10131145137756004577786426----689999876 No 97 >3fj2_A Monooxygenase-like protein; NP_471648.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A* Probab=22.53 E-value=38 Score=14.18 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=18.6 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHH Q ss_conf 899999972013678438961688135 Q gi|254780649|r 101 TFHTILQVKKHNKSVNFVWIMGADNIK 127 (216) Q Consensus 101 T~dtL~~lk~~~p~~~l~fiiG~D~l~ 127 (216) |.+.|..++++||+.++.++-++|+.. T Consensus 29 t~~~L~~i~~~~~~~~l~l~~~~~~~~ 55 (186) T 3fj2_A 29 TEHYLRQLMENYIGENVTLLQNFSQSL 55 (186) T ss_dssp CHHHHHHHHHHTCSSSEEEEECSSCEE T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCE T ss_conf 799999999868996469886588647 No 98 >2inb_A Hypothetical protein; ZP_00107633.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: MSE GOL; 1.60A {Nostoc punctiforme pcc 73102} SCOP: c.52.1.32 PDB: 2okf_A* Probab=22.35 E-value=38 Score=14.15 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=40.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC--CEEEEEC Q ss_conf 342553100032899999972013678438961688135777776199999758--9899938 Q gi|254780649|r 89 ITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTV--PIAIIDR 149 (216) Q Consensus 89 v~~~E~~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~--~iiV~~R 149 (216) ++++|.-.|.=.-|.+ .|++..|+..+|+-+..|.+.+|-+=.-.+.+++.. .++|++- T Consensus 70 i~df~~AlGQ~~~Yr~--~L~~~ePeR~LYLAI~~~iY~~fF~~~~~Q~li~~~qlkLIV~D~ 130 (140) T 2inb_A 70 ISEFHTALGQFINYRG--ALRRRQPERVLYLAVPLTTYKTFFQLDFPKEMIAENQVKMLIYDV 130 (140) T ss_dssp HHHHHHHHHHHHHHHH--HHHTTCTTEEEEEEEEHHHHHTGGGSHHHHHHHHHTTCCEEEEET T ss_pred HHHHHHHHHHHHHHHH--HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 7899998778999999--986329884699986689999999879999999857803999869 No 99 >3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Probab=21.69 E-value=39 Score=14.07 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=21.9 Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 89999758998755566889999999986310475 Q gi|254780649|r 51 QLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNP 85 (216) Q Consensus 51 ~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~ 85 (216) .++++|++.||- -...+.++|.++++.++... T Consensus 175 ~~~~~~~p~NPT---G~v~s~e~l~~l~~l~a~~~ 206 (423) T 3ez1_A 175 GILFVPTYSNPG---GETISLEKARRLAGLQAAAP 206 (423) T ss_dssp EEEECSSSCTTT---CCCCCHHHHHHHHTCCCSST T ss_pred EEEEECCCCCCC---CCCCCHHHHHHHHHHHHHCC T ss_conf 999959896972---81289999999999998628 No 100 >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=20.88 E-value=41 Score=13.97 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=21.1 Q ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEE Q ss_conf 789982-7789713389999999999862---998899997 Q gi|254780649|r 20 MKIGLF-GGNFNPPHHGHIEIAQIAIKKL---NLDQLWWII 56 (216) Q Consensus 20 mkIgif-GGSFdPiH~gHl~ia~~~~~~l---~ld~v~~ip 56 (216) |||.|+ +|| -||+.-+..+.+.| | -+|.|+- T Consensus 1 M~il~~~~gt-----~Ghv~P~lala~~L~~~G-h~V~~~~ 35 (415) T 1iir_A 1 MRVLLATCGS-----RGDTEPLVALAVRVRDLG-ADVRMCA 35 (415) T ss_dssp CEEEEECCSC-----HHHHHHHHHHHHHHHHTT-CEEEEEE T ss_pred CEEEEECCCC-----HHHHHHHHHHHHHHHHCC-CEEEEEE T ss_conf 9799988986-----468999999999999879-9899995 No 101 >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Probab=20.68 E-value=41 Score=13.95 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=23.9 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 8899997589987555668899999999863104753 Q gi|254780649|r 50 DQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPR 86 (216) Q Consensus 50 d~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~ 86 (216) .++++++++.||. ....+.+++.++++.+.++.- T Consensus 178 ~~~~~l~~p~NPt---G~~~s~e~~~~l~~~~~~~~~ 211 (416) T 1bw0_A 178 TKLLIVTNPSNPC---GSNFSRKHVEDIVRLAEELRL 211 (416) T ss_dssp EEEEEEESSCTTT---CCCCCHHHHHHHHHHHHHHTC T ss_pred CCEEEECCCCCCC---CCCCCHHHHHHHHHHHHHCCE T ss_conf 7668848997988---740016789998767764482 Done!