RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(216 letters)
>gnl|CDD|31257 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 197
Score = 126 bits (319), Expect = 3e-30
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 7/193 (3%)
Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL 77
KI LFGG+F+PPH+GH+ IA+ A+ +L LD++ ++ +P K +S E R+++
Sbjct: 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASAEHRLAM 60
Query: 78 SQSLIK-NPRIRITAFEAYLNH-TETFHTILQVK-KHNKSVNFVWIMGADNIKSFHQWHH 134
+ I+ NPR ++ E + T T+ ++ ++ V +I+GADN+ S +W+
Sbjct: 61 LELAIEDNPRFEVSDREIKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYD 120
Query: 135 WKRIVTTVPIAIIDR---FDVTFNYISS-PMAKTFEYARLDESLSHILCTTSPPSWLFIH 190
W ++ V + R ++ + +SS + RLD S + I + +
Sbjct: 121 WDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLPRLDISSTEIRERIRRGASVDYL 180
Query: 191 DRHHIISSTAIRK 203
++S R
Sbjct: 181 LPDSVLSYIEERG 193
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
adenylyltransferase. Nicotinamide/nicotinate
mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT).
NMNAT represents the primary bacterial and eukaryotic
adenylyltransferases for nicotinamide-nucleotide and for
the deamido form, nicotinate nucleotide. It is an
indispensable enzyme in the biosynthesis of NAD(+) and
NADP(+). Nicotinamide-nucleotide adenylyltransferase
synthesizes NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both de
novo and salvage pathways of NAD synthesis.
Length = 192
Score = 117 bits (296), Expect = 2e-27
Identities = 44/195 (22%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL 81
I LFGG+F+PPH GH+ IA+ A+++L LD++ + + K +S E R+ + +
Sbjct: 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKPPKP-ASFEHRLEMLKLA 59
Query: 82 IK-NPRIRITAFEAYLN-HTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
I+ NP+ ++ E + + T T+ ++++ + +I+G+DN+ +W+ W+ ++
Sbjct: 60 IEDNPKFEVSDIEIKRDGPSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELL 119
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISST 199
+ V + + R S + + + ISST
Sbjct: 120 SLVHLVVAPRPGYPIEDASLEKLLLPGG-----------------RIILLDNPLLNISST 162
Query: 200 AIRKKIIEQDNTRTL 214
IR+++ + R L
Sbjct: 163 EIRERLKNGKSIRYL 177
>gnl|CDD|144891 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 79.4 bits (196), Expect = 6e-16
Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 35/182 (19%)
Query: 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK 83
LFGG F+P H GH+ + + A + +LD++ + + + K+ S E+R+ + + ++
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKNLFSAEERLEMLELALE 60
Query: 84 -NPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTV 142
+P + + FE ++ +I+GAD + + W ++
Sbjct: 61 VDPNLEVDDFE--------------------DLDVYFIIGADALVNLRGWRGVTELLPEF 100
Query: 143 PIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIR 202
I +++R P+ E L E L L +D ISST IR
Sbjct: 101 QIVVVNR----------PLDYGLETVFLREELDKYPLGKIVIPDLPYND----ISSTEIR 146
Query: 203 KK 204
++
Sbjct: 147 ER 148
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of these
proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown.
Length = 143
Score = 41.3 bits (97), Expect = 2e-04
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIIT--PFNSVKNYNLSSSLEKRISLSQ 79
+G+ G F P H GH+++ + A + LD++ II P +N + S E+ L +
Sbjct: 1 VGIIIGRFEPFHLGHLKLIKEA-LEEALDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKE 59
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQW--HHWKR 137
L ++ F IL++ V +G D + K
Sbjct: 60 ILKDRLKVVPVDFPEVKI-LLAVVFILKILLKVGPDKVV--VGEDFAFGKNASYNKDLKE 116
Query: 138 IVTTVPIAIIDRFDVTFNYISS 159
+ + I + R S+
Sbjct: 117 LFLDIEIVEVPRVRDGKKISST 138
>gnl|CDD|31013 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 39.4 bits (92), Expect = 7e-04
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
MKI ++ G+F+P +GH++I + A D++ + N K SLE+R+ L +
Sbjct: 2 MKIAVYPGSFDPITNGHLDIIKRASAL--FDEVIVAVA-INPSKKPLF--SLEERVELIR 56
Query: 80 SLIKN-PRIRITAFEAYL 96
K+ P + + F L
Sbjct: 57 EATKHLPNVEVVGFSGLL 74
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 35.4 bits (82), Expect = 0.011
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 15 KVEPGMKIGLFGGN-------------FNPPHHGHIEIAQIAIKKLNLDQLWWIIT---- 57
++PG K+ + G + P G I I + ++ L+L+ L I
Sbjct: 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQ 83
Query: 58 -PF---NSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89
PF +++ LS +RI+++++L+++P I I
Sbjct: 84 DPFLFSGTIRENILSGGQRQRIAIARALLRDPPILI 119
>gnl|CDD|31256 COG1056, NadR, Nicotinamide mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 172
Score = 34.1 bits (78), Expect = 0.031
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKK 46
MK G++ G F P H GH+ + + A+ K
Sbjct: 1 SRMKRGVYFGRFQPLHTGHLYVIKRALSK 29
>gnl|CDD|173914 cd02163, PPAT, Phosphopantetheine adenylyltransferase.
Phosphopantetheine adenylyltransferase (PPAT). PPAT is
an essential enzyme in bacteria, responsible for
catalyzing the rate-limiting step in coenzyme A (CoA)
biosynthesis. The dinucleotide-binding fold of PPAT is
homologous to class I aminoacyl-tRNA synthetases. CoA
has been shown to inhibit PPAT and competes with ATP,
PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Length = 153
Score = 31.7 bits (73), Expect = 0.18
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPF-NSVKNYNLSSSLEKRISL-SQ 79
I ++ G+F+P +GH++I + A K D++ I+ N K SLE+R+ L +
Sbjct: 1 IAVYPGSFDPITNGHLDIIERASKL--FDEV--IVAVAVNPSKKPLF--SLEERVELIRE 54
Query: 80 SLIKNPRIRITAFE 93
+ P + + F+
Sbjct: 55 ATKHLPNVEVDGFD 68
>gnl|CDD|30545 COG0196, RibF, FAD synthase [Coenzyme metabolism].
Length = 304
Score = 30.6 bits (69), Expect = 0.35
Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 36/186 (19%)
Query: 27 GNFNPPHHGH---IEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK 83
GNF+ H GH + A A +K L + +IT + R++
Sbjct: 22 GNFDGVHLGHQKLLAQALEAAEKRGLPVV--VITFEPHPRELLKPDKPPTRLT------- 72
Query: 84 NPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVP 143
R +I Y + + + + F + + ++ + + K IV
Sbjct: 73 PLREKIRLLAGYG--------VDALVVLDFDLEFANLSAEEFVELLVEKLNVKHIVVG-- 122
Query: 144 IAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRK 203
FD F E R + T P I++ ISSTAIR+
Sbjct: 123 ------FDFRFGK---GRQGNAELLR-ELGQKGFEVTIVPK----INEEGIRISSTAIRQ 168
Query: 204 KIIEQD 209
+ E D
Sbjct: 169 ALREGD 174
>gnl|CDD|173919 cd02168, NMNAT_Nudix, Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional proteins, also
containing a Nudix hydrolase domain. N-terminal NMNAT
(Nicotinamide/nicotinate mononucleotide
adenylyltransferase) domain of a novel bifunctional
enzyme endowed with NMN adenylyltransferase and Nudix
hydrolase activities. This domain is highly homologous
to the archeal NMN adenyltransferase that catalyzes NAD
synthesis from NMN and ATP. NMNAT is an essential
enzyme in the biosynthesis of NAD(+) and NADP(+).
Nicotinamide-nucleotide adenylyltransferase synthesizes
NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
The C-terminal domain of this enzyme shares homology
with the archaeal ADP-ribose pyrophosphatase, a member
of the 'Nudix' hydrolase family.
Length = 181
Score = 30.0 bits (68), Expect = 0.46
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKK 46
++ G F P H+GH+ + IA++K
Sbjct: 1 YLVYIGRFQPFHNGHLAVVLIALEK 25
>gnl|CDD|173918 cd02167, NMNAT_NadR, Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional NadR-like proteins.
NMNAT domain of NadR protein. The NadR protein (NadR)
is a bifunctional enzyme possessing both NMN
adenylytransferase (NMNAT) and ribosylnicotinamide
kinase (RNK) activities. Its function is essential for
the growth and survival of H. influenzae and thus may
present a new highly specific anti-infectious drug
target. The N-terminal domain that hosts the NMNAT
activity is closely related to archaeal NMNAT. The
bound NAD at the active site of the NMNAT domain
reveals several critical interactions between NAD and
the protein.The NMNAT domain of hiNadR defines yet
another member of the pyridine nucleotide
adenylyltransferase.
Length = 158
Score = 27.8 bits (62), Expect = 2.2
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL 81
IG+ G F P H GH+ + A+ + +D+L I+ ++ + LEKR+ + +
Sbjct: 1 IGIVFGKFAPLHTGHVYLIYKALSQ--VDELLIIVGSDDTRDDARTGLPLEKRLRWLREI 58
Query: 82 IKNPR-IRITAFE 93
+ I +
Sbjct: 59 FPDQENIVVHTLN 71
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 27.6 bits (61), Expect = 2.6
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 66 NLSSSLEKRISLSQSLIKNPRIRITAFEAYLN-----HTETFHT-ILQVKKHNKSVNF 117
S+ ++++++++++L+ +P I + + + FH I Q+K ++V F
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILV--LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188
>gnl|CDD|173895 cd00517, ATPS, ATP-sulfurylase. ATP-sulfurylase (ATPS), also known
as sulfate adenylate transferase, catalyzes the transfer
of an adenylyl group from ATP to sulfate, forming
adenosine 5'-phosphosulfate (APS). This reaction is
generally accompanied by a further reaction, catalyzed
by APS kinase, in which APS is phosphorylated to yield
3'-phospho-APS (PAPS). In some organisms the APS kinase
is a separate protein, while in others it is
incorporated with ATP sulfurylase in a bifunctional
enzyme that catalyzes both reactions. In bifunctional
proteins, the domain that performs the kinase activity
can be attached at the N-terminal end of the sulfurylase
unit or at the C-terminal end, depending on the
organism. While the reaction is ubiquitous among
organisms, the physiological role of the reaction
varies. In some organisms it is used to generate APS
from sulfate and ATP, while in others it proceeds in the
opposite direction to generate ATP from APS and
pyrophosphate. ATP sulfurylase can be a monomer, a
homodimer, or a homo-oligomer, depending on the
organism. ATPS belongs to a large superfamily of
nucleotidyltransferases that includes pantothenate
synthetase (PanC), phosphopantetheine
adenylyltransferase (PPAT), and the amino-acyl tRNA
synthetases. The enzymes of this family are structurally
similar and share a dinucleotide-binding domain.
Length = 353
Score = 27.6 bits (62), Expect = 2.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 30 NPPHHGHIEIAQIAIKKLNLDQL 52
NP H H E+ + A +KL D L
Sbjct: 166 NPMHRAHEELMKRAAEKLLNDGL 188
>gnl|CDD|145087 pfam01747, ATP-sulfurylase, ATP-sulfurylase. This family consists
of ATP-sulfurylase or sulfate adenylyltransferase
EC:2.7.7.4 some of which are part of a bifunctional
polypeptide chain associated with adenosyl
phosphosulphate (APS) kinase pfam01583. Both enzymes are
required for PAPS (phosphoadenosine-phosphosulfate)
synthesis from inorganic sulphate. ATP sulfurylase
catalyses the synthesis of adenosine-phosphosulfate APS
from ATP and inorganic sulphate.
Length = 310
Score = 26.8 bits (60), Expect = 4.4
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 29 FNPPHHGHIEIAQIAIKK 46
NP H H + + A++K
Sbjct: 125 RNPMHRAHEYLMKRALEK 142
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 26.8 bits (59), Expect = 4.5
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 13/51 (25%)
Query: 15 KVEPGMKIGLFGGN-------------FNPPHHGHIEIAQIAIKKLNLDQL 52
++PG K+G+ G P G I I + I K+ L L
Sbjct: 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212
>gnl|CDD|173917 cd02166, NMNAT_Archaea, Nicotinamide/nicotinate mononucleotide
adenylyltransferase, archaeal. This family of archaeal
proteins exhibits nicotinamide-nucleotide
adenylyltransferase (NMNAT) activity utilizing the
salvage pathway to synthesize NAD. In some cases, the
enzyme was tested and found also to have the activity
of nicotinate-nucleotide adenylyltransferase an enzyme
of NAD de novo biosynthesis, although with a higher Km.
In some archaeal species, a number of proteins which
are uncharacterized with respect to activity, are also
present.
Length = 163
Score = 26.9 bits (60), Expect = 4.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 23 GLFGGNFNPPHHGHIEI 39
LF G F P H GH+++
Sbjct: 2 ALFIGRFQPFHLGHLKV 18
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 26.8 bits (60), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
L + L NP RI+AFEA L H
Sbjct: 264 LKKMLTFNPHKRISAFEA-LQH 284
>gnl|CDD|107215 cd06459, M3B_Oligoendopeptidase_F, Peptidase family M3B
Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is
mostly bacterial and includes oligoendopeptidase F from
Lactococcus lactis. This enzyme hydrolyzes peptides
containing between 7 and 17 amino acids with fairly
broad specificity. The PepF gene is duplicated in L.
lactis on the plasmid that bears it, while a shortened
second copy is found in Bacillus subtilis. Most
bacterial PepFs are cytoplasmic endopeptidases; however,
the PepF Bacillus amyloliquefaciens oligopeptidase is a
secreted protein and may facilitate the process of
sporulation. Specifically, the yjbG gene encoding the
homolog of the PepF1 and PepF2 oligoendopeptidases of
Lactococcus lactis has been identified in Bacillus
subtilis as an inhibitor of sporulation initiation when
over expressed from a multicopy plasmid.
Length = 427
Score = 26.4 bits (59), Expect = 6.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 73 KRISLSQSLI-----KNPRIRITAFEA----YLNHTETFHTIL--QVKKHNK 113
+ ++LSQ+L + +R AFEA Y + T IL VK
Sbjct: 31 EELTLSQNLSNLLESPDREVRKKAFEALYKAYEKYENTLAAILNTLVKLRLT 82
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 26.3 bits (59), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
L + L+ +P+ RITA EA L H
Sbjct: 269 LEKMLVFDPKKRITADEA-LAH 289
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 26.2 bits (58), Expect = 6.6
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 38 EIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRI 87
EI +I ++KL L + LS ++KR++L+++L +P +
Sbjct: 112 EIREIVLEKLEAVGL----RGAEDLYPAELSGGMKKRVALARALALDPEL 157
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 26.3 bits (58), Expect = 7.2
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 31 PPHHGHIEIAQIAIKKLNLDQLWWIITPF--------NSVKNYNLSSSLEKRISLSQSLI 82
P G + + I + + ++L + S+ LS +R+ L+++L
Sbjct: 53 RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARALY 112
Query: 83 KNPRI 87
NPRI
Sbjct: 113 GNPRI 117
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 26.1 bits (57), Expect = 8.1
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 67 LSSSLEKRISLSQSLIKNPRIRI 89
LS ++RI+++++L++NPR+ I
Sbjct: 605 LSGGQKQRIAIARALLRNPRVLI 627
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 25.8 bits (57), Expect = 9.2
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 28/100 (28%)
Query: 15 KVEPGMKIGLFGGN-------------FNPPHHGHIEIAQIAIKKLNLD----------- 50
VE G GL G N P G I++ IKK +
Sbjct: 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81
Query: 51 -QLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89
L+ +T +N LS +++R++L+Q+L+ +P + I
Sbjct: 82 PSLYENLTVR---ENLKLSGGMKQRLALAQALLHDPELLI 118
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.135 0.419
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,720,812
Number of extensions: 137681
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 37
Length of query: 216
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,318,927
Effective search space: 544184802
Effective search space used: 544184802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)