RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase;
           Provisional.
          Length = 203

 Score =  169 bits (430), Expect = 6e-43
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 16/200 (8%)

Query: 17  EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS 76
           E   +IGLFGG F+PPH+GH+ IA+ A ++L LD++W++  P    K     + LE R++
Sbjct: 1   EMMKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLA 60

Query: 77  LSQSLIK-NPRIRITAFEAYLNHTE-TFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHH 134
           + +  I  NPR  ++  E        T  T+ +++     V  V+I+GAD +    +W  
Sbjct: 61  MLELAIADNPRFSVSDIELERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKR 120

Query: 135 WKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHH 194
           W+ I+  V   ++ R       ++ P  +    A                +   +     
Sbjct: 121 WEEILDLVHFVVVPRPGYPLEALALPALQQLLEA--------------AGAITLLDVPLL 166

Query: 195 IISSTAIRKKIIEQDNTRTL 214
            ISSTAIR++I E    R L
Sbjct: 167 AISSTAIRERIKEGRPIRYL 186


>gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
           adenylyltransferase.  This model represents the
           predominant bacterial/eukaryotic adenylyltransferase for
           nicotinamide-nucleotide, its deamido form nicotinate
           nucleotide, or both. The first activity,
           nicotinamide-nucleotide adenylyltransferase (EC
           2.7.7.1), synthesizes NAD by the salvage pathway, while
           the second, nicotinate-nucleotide adenylyltransferase
           (EC 2.7.7.18) synthesizes the immediate precursor of NAD
           by the de novo pathway. In E. coli, NadD activity is
           biased toward the de novo pathway while salvage activity
           is channeled through the multifunctional NadR protein,
           but this division of labor may be exceptional. The given
           name of this model, nicotinate (nicotinamide) nucleotide
           adenylyltransferase, reflects the lack of absolute
           specificity with respect to substrate amidation state in
           most species.
          Length = 193

 Score =  121 bits (305), Expect = 2e-28
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 17/184 (9%)

Query: 24  LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI- 82
           LFGG+F+P H+GH+ +A+ A+  L+LD++ ++ T     K    ++S   R+++ +  I 
Sbjct: 1   LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIE 60

Query: 83  KNPRIRITAFEA-YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTT 141
            NP+  +  FE      + T  T+  +KK    V   +I+GAD ++SF  W  W+ ++  
Sbjct: 61  DNPKFEVDDFEIKRGGPSYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLEL 120

Query: 142 VPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAI 201
           V + I+ R                 Y      L   +      +   +H+    ISST I
Sbjct: 121 VHLVIVPR---------------PGYTLDKALLEKAILRMHHGNLTLLHNPRVPISSTEI 165

Query: 202 RKKI 205
           R++I
Sbjct: 166 RQRI 169


>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
           Validated.
          Length = 342

 Score =  100 bits (252), Expect = 2e-22
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 25/186 (13%)

Query: 20  MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS-LS 78
           MKI +FGG+F+P H GHI IA+ AIKKL LD+L+++ T  N  K    +S+ E R++ L 
Sbjct: 1   MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLK 60

Query: 79  QSLIKNPRIRITAFE-AYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKR 137
            +L   P++ ++ FE    N + T  TI   KK   +    +I+G+DN++ F +W + + 
Sbjct: 61  LALKNLPKMEVSDFEIKRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEE 120

Query: 138 IVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIIS 197
           I+  V I +  R       I+    K +                     L + +++  IS
Sbjct: 121 ILKKVQIVVFKR----KKNINKKNLKKYNV-------------------LLLKNKNLNIS 157

Query: 198 STAIRK 203
           ST IRK
Sbjct: 158 STKIRK 163


>gnl|CDD|180781 PRK06973, PRK06973, nicotinic acid mononucleotide
           adenylyltransferase; Provisional.
          Length = 243

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 18/202 (8%)

Query: 21  KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ- 79
           +IG+ GG F+P H GH+ +A+     L+L +L  I       +  ++S++ E R+++++ 
Sbjct: 23  RIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAG-QPWQKADVSAA-EHRLAMTRA 80

Query: 80  --SLIKNPRIRITAFEAYLNH---TETFHTILQVK-KHNKSVNFVWIMGADNIKSFHQWH 133
             + +  P + +      + H   T T  T+ + + +     +   ++GAD +     W 
Sbjct: 81  AAASLVLPGVTVRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWR 140

Query: 134 HWKRIVTTVPIAIIDR--FDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHD 191
            W+R+     +    R  FD+     S  +A      + D  +  +  T  P   L I  
Sbjct: 141 DWRRLFDYAHLCAATRPGFDLG--AASPAVAAEIAARQADADV--LQAT--PAGHLLIDT 194

Query: 192 RHHI-ISSTAIRKKIIEQDNTR 212
                +S+T IR  +      R
Sbjct: 195 TLAFDLSATDIRAHLRACIARR 216


>gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain.
          Protein families that contain at least one copy of this
          domain include citrate lyase ligase,
          pantoate-beta-alanine ligase, glycerol-3-phosphate
          cytidyltransferase, ADP-heptose synthase,
          phosphocholine cytidylyltransferase, lipopolysaccharide
          core biosynthesis protein KdtB, the bifunctional
          protein NadR, and a number whose function is unknown.
          Many of these proteins are known to use CTP or ATP and
          release pyrophosphate.
          Length = 66

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSS--SLEKRISLSQ 79
            +F G F+P H GH+++ + A +    D+L   +     V         SLE+R+ + +
Sbjct: 1  RVIFVGTFDPFHLGHLDLLERAKEL--FDELIVGVGSDQFVNPLKGEPVFSLEERLEMLK 58

Query: 80 SLIK 83
          +L  
Sbjct: 59 ALKY 62


>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
           Provisional.
          Length = 140

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 14/110 (12%)

Query: 20  MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
           MKI ++ G+F+P H GH+ I + A+K    D+++ +++  N  K  + +S L+ R    +
Sbjct: 1   MKIAIYPGSFDPFHKGHLNILKKALKL--FDKVYVVVS-INPDK--SNASDLDSRFKNVK 55

Query: 80  SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSF 129
           + +K+        E  +N  +    I   KK     NF+ I  A N   F
Sbjct: 56  NKLKD----FKNVEVLINENKLTAEI--AKKLG--ANFL-IRSARNNIDF 96


>gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
          adenylyltransferase, bacterial.  This model describes
          pantetheine-phosphate adenylyltransferase, the
          penultimate enzyme of coenzyme A (CoA) biosynthesis in
          bacteria. It does not show any strong homology to
          eukaryotic enzymes of coenzyme A biosynthesis. This
          protein was previously designated KdtB and postulated
          (because of cytidyltransferase homology and proximity
          to kdtA) to be an enzyme of LPS biosynthesis, a
          cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
          acid. However, no activity toward that compound was
          found with either CTP or ATP. The phylogenetic
          distribution of this enzyme is more consistent with
          coenzyme A biosynthesis than with LPS biosynthesis.
          Length = 155

 Score = 36.1 bits (84), Expect = 0.006
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL 81
          I L+ G+F+P  +GH++I + A      D++   +   N  K      SLE+R+ L +  
Sbjct: 1  IALYPGSFDPVTNGHLDIIKRAAAL--FDEVIVAVA-KNPSKKPLF--SLEERVELIKDA 55

Query: 82 IKN-PRIRITAFEAYLNH 98
           K+ P +R+  F+  L  
Sbjct: 56 TKHLPNVRVDVFDGLLVD 73


>gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase;
          Provisional.
          Length = 159

 Score = 35.8 bits (84), Expect = 0.008
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNL-DQLWWIITPF-NSVKNYNLSSSLEKRISL 77
          MKI ++ G+F+P  +GH++I + A     L D++  I+    N  K      SLE+R+ L
Sbjct: 1  MKIAIYPGSFDPITNGHLDIIERA---SRLFDEV--IVAVAINPSKKPLF--SLEERVEL 53

Query: 78 -SQSLIKNPRIRITAFE 93
            ++    P + + +F+
Sbjct: 54 IREATAHLPNVEVVSFD 70


>gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
          adenylyltransferase/ADP-ribose pyrophosphatase;
          Provisional.
          Length = 340

 Score = 31.5 bits (72), Expect = 0.16
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKK 46
            +F G F P H+GH+ + + A+ +
Sbjct: 8  YLVFIGRFQPFHNGHLAVIREALSR 32


>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
          adenylyltransferase, NadR type.  E. coli NadR has also
          been found to regulate the import of its substrate,
          nicotinamide ribonucleotide, but it is not known if the
          other members of this model share that activity.
          Length = 325

 Score = 31.4 bits (71), Expect = 0.21
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
            IG+  G F P H GHI +   A  K  +D+L  ++              ++ R+   +
Sbjct: 1  KTIGVVFGKFYPLHTGHIYLIYEAFSK--VDELHIVVGSLFYDSKAKRPPPVQDRLRWLR 58

Query: 80 SLIKNPR--IRITAF 92
           + K  +  I I   
Sbjct: 59 EIFKYQKNQIFIHHL 73


>gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide
           adenylyltransferase; Provisional.
          Length = 174

 Score = 29.7 bits (67), Expect = 0.56
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 20  MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
            KI +FG  FNPP  GH  +    I+ L+   L  ++          +    E R  L  
Sbjct: 2   KKIAVFGSAFNPPSLGHKSV----IESLSHFDLVLLVPSIAHAWGKTM-LDYETRCQLVD 56

Query: 80  SLIKN---PRIRITAFEAYLNHTE----TFHTILQVKKHNKSVNFVWIMGADNIKSFHQW 132
           + I++     ++ +  E  L   +    T+  + ++++     +  +++G DN   F ++
Sbjct: 57  AFIQDLGLSNVQRSDIEQELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKF 116

Query: 133 HHWKRIV 139
           +    I 
Sbjct: 117 YKADEIT 123


>gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase;
          Provisional.
          Length = 174

 Score = 28.7 bits (65), Expect = 1.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 23 GLFGGNFNPPHHGHIEI 39
           LF G F P H GH+E+
Sbjct: 3  ALFIGRFQPFHKGHLEV 19


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
           component A2.  The enzyme that catalyzes the final step
           in methanogenesis, methyl coenzyme M reductase, contains
           alpha, beta, and gamma chains. In older literature, the
           complex of alpha, beta, and gamma chains was termed
           component C, while this single chain protein was termed
           methyl coenzyme M reductase system component A2.
          Length = 520

 Score = 27.5 bits (61), Expect = 2.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 67  LSSSLEKRISLSQSLIKNPRIRI 89
           LS     R++L+Q LIK PRI I
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVI 450


>gnl|CDD|114733 pfam06027, DUF914, Eukaryotic protein of unknown function (DUF914).
            This family consists of several hypothetical proteins
           of unknown function. Some of the sequences in this
           family are annotated as being putative membrane
           proteins.
          Length = 335

 Score = 27.4 bits (61), Expect = 3.0
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 27/128 (21%)

Query: 75  ISLSQSLIKNPRIRITAFEAYLNHTETF--HTILQVKKHNKSVNFVWIMGADNIKSFHQW 132
              + S +    I     + +LN+      +T +   +           G  N+    + 
Sbjct: 28  TGFTSSYLARKGINAPTSQTFLNYVLLALVYTGILAYR----------RGEKNLLVIIKR 77

Query: 133 HHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPP----SWLF 188
             WK         ++   DV  NY+   + K ++Y  L  S+  + C   P     SW F
Sbjct: 78  KWWKYF-------LLALVDVEANYL---VVKAYQYTSL-TSVQLLDCWAIPCVLVLSWFF 126

Query: 189 IHDRHHII 196
           +  R+ ++
Sbjct: 127 LKTRYRLM 134


>gnl|CDD|162833 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
           This family consists of the archaeal A' subunit of the
          DNA-directed RNA polymerase. The example from
          Methanocaldococcus jannaschii contains an intein.
          Length = 868

 Score = 27.0 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 12 RMPKVEPGMKIGLFGGNFN--PPHHGHIEIA 40
          R+  +EPG++    GG     P H GHIE+A
Sbjct: 46 RLGVIEPGLRCKTCGGKVGECPGHFGHIELA 76


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score = 27.0 bits (60), Expect = 3.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 66  NLSSSLEKRISLSQSLIKNPRIRI 89
           NLS    +RI+++++L+ NPRI I
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILI 616


>gnl|CDD|173323 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
          Length = 335

 Score = 26.6 bits (59), Expect = 4.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 57  TPFNSVKNYNLSSSLEKR----ISLSQSLIK-NPRIRITAFEAYLNH 98
           T F   K  +L +         I L QSL+K NP  RI+A EA L H
Sbjct: 268 TEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEA-LKH 313


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
           Provisional.
          Length = 1466

 Score = 26.5 bits (58), Expect = 5.9
 Identities = 10/23 (43%), Positives = 19/23 (82%)

Query: 67  LSSSLEKRISLSQSLIKNPRIRI 89
           LS   ++RIS+++++I+NP+I I
Sbjct: 580 LSGGQKQRISIARAIIRNPKILI 602


>gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB;
           Provisional.
          Length = 910

 Score = 26.1 bits (58), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 161 MAKTFEYARLDESLSHIL 178
           + K F Y RLD  +SHIL
Sbjct: 316 IDKDFLYFRLDSKISHIL 333


>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
           Provisional.
          Length = 353

 Score = 25.9 bits (57), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 12  RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIA 43
           R PK  PG +I    G+F+  H GHI + Q A
Sbjct: 186 RSPK--PGDRIVYVDGSFDLFHIGHIRVLQKA 215


>gnl|CDD|184227 PRK13670, PRK13670, hypothetical protein; Provisional.
          Length = 388

 Score = 25.9 bits (58), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)

Query: 190 HD---RHHIISSTAIRKKIIEQD 209
           HD        S+TAIRK ++E+D
Sbjct: 192 HDEELDGEFASATAIRKALLEKD 214


>gnl|CDD|173106 PRK14643, PRK14643, hypothetical protein; Provisional.
          Length = 164

 Score = 26.0 bits (57), Expect = 8.8
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 19/75 (25%)

Query: 68  SSSLEKRISLSQSLIK-----------NPRIRITAFEAYL----NHTETFHTILQVKKHN 112
           SS +EK+I   + L+K           N   ++  FE Y+     +T TF     +K   
Sbjct: 86  SSGIEKQIRSQEELVKALNQWVYVQLNNEIKKVKEFEGYVTKYNVNTNTFRFTFFIKGQK 145

Query: 113 KSVNFVWIMGADNIK 127
           K ++  +    + IK
Sbjct: 146 KKLDVKY----EQIK 156


>gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase;
          Provisional.
          Length = 196

 Score = 25.7 bits (56), Expect = 9.0
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNS------VKNYNLSSSLEKRISL 77
          +F G F P H  H++  +IA     L Q  ++I    S      +KN  L+   E+ I  
Sbjct: 8  VFIGRFQPFHLAHMQTIEIA-----LQQSRYVILALGSAQMERNIKNPFLAIEREQMILS 62

Query: 78 SQSLIKNPRIR 88
          + SL +  RIR
Sbjct: 63 NFSLDEQKRIR 73


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,537,484
Number of extensions: 211343
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 29
Length of query: 216
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 127
Effective length of database: 4,071,361
Effective search space: 517062847
Effective search space used: 517062847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)