RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase; Provisional. Length = 203 Score = 169 bits (430), Expect = 6e-43 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 16/200 (8%) Query: 17 EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS 76 E +IGLFGG F+PPH+GH+ IA+ A ++L LD++W++ P K + LE R++ Sbjct: 1 EMMKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLA 60 Query: 77 LSQSLIK-NPRIRITAFEAYLNHTE-TFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHH 134 + + I NPR ++ E T T+ +++ V V+I+GAD + +W Sbjct: 61 MLELAIADNPRFSVSDIELERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKR 120 Query: 135 WKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHH 194 W+ I+ V ++ R ++ P + A + + Sbjct: 121 WEEILDLVHFVVVPRPGYPLEALALPALQQLLEA--------------AGAITLLDVPLL 166 Query: 195 IISSTAIRKKIIEQDNTRTL 214 ISSTAIR++I E R L Sbjct: 167 AISSTAIRERIKEGRPIRYL 186 >gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. Length = 193 Score = 121 bits (305), Expect = 2e-28 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 17/184 (9%) Query: 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI- 82 LFGG+F+P H+GH+ +A+ A+ L+LD++ ++ T K ++S R+++ + I Sbjct: 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIE 60 Query: 83 KNPRIRITAFEA-YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTT 141 NP+ + FE + T T+ +KK V +I+GAD ++SF W W+ ++ Sbjct: 61 DNPKFEVDDFEIKRGGPSYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLEL 120 Query: 142 VPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAI 201 V + I+ R Y L + + +H+ ISST I Sbjct: 121 VHLVIVPR---------------PGYTLDKALLEKAILRMHHGNLTLLHNPRVPISSTEI 165 Query: 202 RKKI 205 R++I Sbjct: 166 RQRI 169 >gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase; Validated. Length = 342 Score = 100 bits (252), Expect = 2e-22 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 25/186 (13%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS-LS 78 MKI +FGG+F+P H GHI IA+ AIKKL LD+L+++ T N K +S+ E R++ L Sbjct: 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLK 60 Query: 79 QSLIKNPRIRITAFE-AYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKR 137 +L P++ ++ FE N + T TI KK + +I+G+DN++ F +W + + Sbjct: 61 LALKNLPKMEVSDFEIKRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEE 120 Query: 138 IVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIIS 197 I+ V I + R I+ K + L + +++ IS Sbjct: 121 ILKKVQIVVFKR----KKNINKKNLKKYNV-------------------LLLKNKNLNIS 157 Query: 198 STAIRK 203 ST IRK Sbjct: 158 STKIRK 163 >gnl|CDD|180781 PRK06973, PRK06973, nicotinic acid mononucleotide adenylyltransferase; Provisional. Length = 243 Score = 65.2 bits (159), Expect = 1e-11 Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 18/202 (8%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ- 79 +IG+ GG F+P H GH+ +A+ L+L +L I + ++S++ E R+++++ Sbjct: 23 RIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAG-QPWQKADVSAA-EHRLAMTRA 80 Query: 80 --SLIKNPRIRITAFEAYLNH---TETFHTILQVK-KHNKSVNFVWIMGADNIKSFHQWH 133 + + P + + + H T T T+ + + + + ++GAD + W Sbjct: 81 AAASLVLPGVTVRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWR 140 Query: 134 HWKRIVTTVPIAIIDR--FDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHD 191 W+R+ + R FD+ S +A + D + + T P L I Sbjct: 141 DWRRLFDYAHLCAATRPGFDLG--AASPAVAAEIAARQADADV--LQAT--PAGHLLIDT 194 Query: 192 RHHI-ISSTAIRKKIIEQDNTR 212 +S+T IR + R Sbjct: 195 TLAFDLSATDIRAHLRACIARR 216 >gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66 Score = 39.2 bits (92), Expect = 9e-04 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSS--SLEKRISLSQ 79 +F G F+P H GH+++ + A + D+L + V SLE+R+ + + Sbjct: 1 RVIFVGTFDPFHLGHLDLLERAKEL--FDELIVGVGSDQFVNPLKGEPVFSLEERLEMLK 58 Query: 80 SLIK 83 +L Sbjct: 59 ALKY 62 >gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase; Provisional. Length = 140 Score = 38.6 bits (90), Expect = 0.001 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 14/110 (12%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 MKI ++ G+F+P H GH+ I + A+K D+++ +++ N K + +S L+ R + Sbjct: 1 MKIAIYPGSFDPFHKGHLNILKKALKL--FDKVYVVVS-INPDK--SNASDLDSRFKNVK 55 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSF 129 + +K+ E +N + I KK NF+ I A N F Sbjct: 56 NKLKD----FKNVEVLINENKLTAEI--AKKLG--ANFL-IRSARNNIDF 96 >gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis. Length = 155 Score = 36.1 bits (84), Expect = 0.006 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%) Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL 81 I L+ G+F+P +GH++I + A D++ + N K SLE+R+ L + Sbjct: 1 IALYPGSFDPVTNGHLDIIKRAAAL--FDEVIVAVA-KNPSKKPLF--SLEERVELIKDA 55 Query: 82 IKN-PRIRITAFEAYLNH 98 K+ P +R+ F+ L Sbjct: 56 TKHLPNVRVDVFDGLLVD 73 >gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional. Length = 159 Score = 35.8 bits (84), Expect = 0.008 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNL-DQLWWIITPF-NSVKNYNLSSSLEKRISL 77 MKI ++ G+F+P +GH++I + A L D++ I+ N K SLE+R+ L Sbjct: 1 MKIAIYPGSFDPITNGHLDIIERA---SRLFDEV--IVAVAINPSKKPLF--SLEERVEL 53 Query: 78 -SQSLIKNPRIRITAFE 93 ++ P + + +F+ Sbjct: 54 IREATAHLPNVEVVSFD 70 >gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional. Length = 340 Score = 31.5 bits (72), Expect = 0.16 Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKK 46 +F G F P H+GH+ + + A+ + Sbjct: 8 YLVFIGRFQPFHNGHLAVIREALSR 32 >gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. Length = 325 Score = 31.4 bits (71), Expect = 0.21 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 IG+ G F P H GHI + A K +D+L ++ ++ R+ + Sbjct: 1 KTIGVVFGKFYPLHTGHIYLIYEAFSK--VDELHIVVGSLFYDSKAKRPPPVQDRLRWLR 58 Query: 80 SLIKNPR--IRITAF 92 + K + I I Sbjct: 59 EIFKYQKNQIFIHHL 73 >gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide adenylyltransferase; Provisional. Length = 174 Score = 29.7 bits (67), Expect = 0.56 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 12/127 (9%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 KI +FG FNPP GH + I+ L+ L ++ + E R L Sbjct: 2 KKIAVFGSAFNPPSLGHKSV----IESLSHFDLVLLVPSIAHAWGKTM-LDYETRCQLVD 56 Query: 80 SLIKN---PRIRITAFEAYLNHTE----TFHTILQVKKHNKSVNFVWIMGADNIKSFHQW 132 + I++ ++ + E L + T+ + ++++ + +++G DN F ++ Sbjct: 57 AFIQDLGLSNVQRSDIEQELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKF 116 Query: 133 HHWKRIV 139 + I Sbjct: 117 YKADEIT 123 >gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase; Provisional. Length = 174 Score = 28.7 bits (65), Expect = 1.2 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 23 GLFGGNFNPPHHGHIEI 39 LF G F P H GH+E+ Sbjct: 3 ALFIGRFQPFHKGHLEV 19 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 27.5 bits (61), Expect = 2.7 Identities = 12/23 (52%), Positives = 15/23 (65%) Query: 67 LSSSLEKRISLSQSLIKNPRIRI 89 LS R++L+Q LIK PRI I Sbjct: 428 LSEGERHRVALAQVLIKEPRIVI 450 >gnl|CDD|114733 pfam06027, DUF914, Eukaryotic protein of unknown function (DUF914). This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins. Length = 335 Score = 27.4 bits (61), Expect = 3.0 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 27/128 (21%) Query: 75 ISLSQSLIKNPRIRITAFEAYLNHTETF--HTILQVKKHNKSVNFVWIMGADNIKSFHQW 132 + S + I + +LN+ +T + + G N+ + Sbjct: 28 TGFTSSYLARKGINAPTSQTFLNYVLLALVYTGILAYR----------RGEKNLLVIIKR 77 Query: 133 HHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPP----SWLF 188 WK ++ DV NY+ + K ++Y L S+ + C P SW F Sbjct: 78 KWWKYF-------LLALVDVEANYL---VVKAYQYTSL-TSVQLLDCWAIPCVLVLSWFF 126 Query: 189 IHDRHHII 196 + R+ ++ Sbjct: 127 LKTRYRLM 134 >gnl|CDD|162833 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. Length = 868 Score = 27.0 bits (60), Expect = 3.7 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Query: 12 RMPKVEPGMKIGLFGGNFN--PPHHGHIEIA 40 R+ +EPG++ GG P H GHIE+A Sbjct: 46 RLGVIEPGLRCKTCGGKVGECPGHFGHIELA 76 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 27.0 bits (60), Expect = 3.7 Identities = 11/24 (45%), Positives = 18/24 (75%) Query: 66 NLSSSLEKRISLSQSLIKNPRIRI 89 NLS +RI+++++L+ NPRI I Sbjct: 593 NLSGGQRQRIAIARALVGNPRILI 616 >gnl|CDD|173323 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional. Length = 335 Score = 26.6 bits (59), Expect = 4.4 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Query: 57 TPFNSVKNYNLSSSLEKR----ISLSQSLIK-NPRIRITAFEAYLNH 98 T F K +L + I L QSL+K NP RI+A EA L H Sbjct: 268 TEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEA-LKH 313 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 26.5 bits (58), Expect = 5.9 Identities = 10/23 (43%), Positives = 19/23 (82%) Query: 67 LSSSLEKRISLSQSLIKNPRIRI 89 LS ++RIS+++++I+NP+I I Sbjct: 580 LSGGQKQRISIARAIIRNPKILI 602 >gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB; Provisional. Length = 910 Score = 26.1 bits (58), Expect = 7.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Query: 161 MAKTFEYARLDESLSHIL 178 + K F Y RLD +SHIL Sbjct: 316 IDKDFLYFRLDSKISHIL 333 >gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional. Length = 353 Score = 25.9 bits (57), Expect = 7.4 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIA 43 R PK PG +I G+F+ H GHI + Q A Sbjct: 186 RSPK--PGDRIVYVDGSFDLFHIGHIRVLQKA 215 >gnl|CDD|184227 PRK13670, PRK13670, hypothetical protein; Provisional. Length = 388 Score = 25.9 bits (58), Expect = 8.1 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%) Query: 190 HD---RHHIISSTAIRKKIIEQD 209 HD S+TAIRK ++E+D Sbjct: 192 HDEELDGEFASATAIRKALLEKD 214 >gnl|CDD|173106 PRK14643, PRK14643, hypothetical protein; Provisional. Length = 164 Score = 26.0 bits (57), Expect = 8.8 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 19/75 (25%) Query: 68 SSSLEKRISLSQSLIK-----------NPRIRITAFEAYL----NHTETFHTILQVKKHN 112 SS +EK+I + L+K N ++ FE Y+ +T TF +K Sbjct: 86 SSGIEKQIRSQEELVKALNQWVYVQLNNEIKKVKEFEGYVTKYNVNTNTFRFTFFIKGQK 145 Query: 113 KSVNFVWIMGADNIK 127 K ++ + + IK Sbjct: 146 KKLDVKY----EQIK 156 >gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase; Provisional. Length = 196 Score = 25.7 bits (56), Expect = 9.0 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Query: 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNS------VKNYNLSSSLEKRISL 77 +F G F P H H++ +IA L Q ++I S +KN L+ E+ I Sbjct: 8 VFIGRFQPFHLAHMQTIEIA-----LQQSRYVILALGSAQMERNIKNPFLAIEREQMILS 62 Query: 78 SQSLIKNPRIR 88 + SL + RIR Sbjct: 63 NFSLDEQKRIR 73 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.135 0.419 Gapped Lambda K H 0.267 0.0642 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,537,484 Number of extensions: 211343 Number of successful extensions: 451 Number of sequences better than 10.0: 1 Number of HSP's gapped: 445 Number of HSP's successfully gapped: 29 Length of query: 216 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 127 Effective length of database: 4,071,361 Effective search space: 517062847 Effective search space used: 517062847 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.1 bits)