RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(216 letters)
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 108 bits (271), Expect = 8e-25
Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 6/198 (3%)
Query: 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLS 78
G +IGLFGG F+P H GH+ A ++ LD+L + + S+ ++ +
Sbjct: 22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVE 81
Query: 79 QSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVN--FVWIMGADNIKSFHQWHHWK 136
+++ R+ + E + L+ + + + ++G D WH W+
Sbjct: 82 RAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWE 141
Query: 137 RIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHII 196
++ I ++ R D S + D F+ +
Sbjct: 142 ALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALK----GPGGQITFVWQTPLAV 197
Query: 197 SSTAIRKKIIEQDNTRTL 214
S+T IR + + R L
Sbjct: 198 SATQIRALLGAGRSVRFL 215
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT;
1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Length = 213
Score = 94.3 bits (233), Expect = 2e-20
Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 4/196 (2%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80
LFGG F+P H+GH++ + + L ++ I + ++S++++ L +
Sbjct: 4 LQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELA 63
Query: 81 LIKNPRIRITAFEAYLNHTETFHTILQVKK--HNKSVNFVWIMGADNIKSFHQWHHWKRI 138
+ P + E N L+ + V +I+G D++ +F W+ ++ I
Sbjct: 64 IADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETI 123
Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISS 198
+ + + R + E L IS+
Sbjct: 124 LDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHN--PEDLHLQPAGKIYLAETPWFNISA 181
Query: 199 TAIRKKIIEQDNTRTL 214
T IR+++ ++ L
Sbjct: 182 TIIRERLQNGESCEDL 197
>1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine
adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A
{Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A
1nus_A* 1nut_A* 1nuu_A*
Length = 252
Score = 88.8 bits (219), Expect = 9e-19
Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 46/227 (20%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW----IITPFNSVKNYNLSSSLEKRI 75
+ L G+FNP + H+ + ++A L+ ++ II+P N ++ R+
Sbjct: 6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRV 65
Query: 76 SLSQSLIK-NPRIRITAFEAYLN-HTETFHTILQVKK---------------------HN 112
++++ ++ + IR+ +E+ ET +
Sbjct: 66 AMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPA 125
Query: 113 KSVNFVWIMGADNIKSFHQWHHWK-----RIVTTVPIAIIDRFDVTFNYISSPMAKTFEY 167
+ GAD +K+F + WK IV + + R P E
Sbjct: 126 AVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVS------HDPKGYIAES 179
Query: 168 ARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214
L +I P + IS+T IR+ + + + + L
Sbjct: 180 PILRMHQHNIHLAKEPV--------QNEISATYIRRALGQGQSVKYL 218
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase;
nucleotidyltransferase superfamily; HET: NAD; 2.20A
{Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A*
1kku_A 1gzu_A*
Length = 279
Score = 82.6 bits (203), Expect = 7e-17
Identities = 36/253 (14%), Positives = 74/253 (29%), Gaps = 65/253 (25%)
Query: 13 MPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLN----LDQLWWIITPFNSVKNYNLS 68
M E + L G+FNP + H+ + ++A +N + II+P
Sbjct: 1 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGL 60
Query: 69 SSLEKRISLSQSLIK-NPRIRITAFEAYL-NHTETFHTILQVKKHNKSVNFVWIMGA--- 123
R+ +++ K + + + +E+ ET + ++ ++ + +
Sbjct: 61 IPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTL 120
Query: 124 -------------------------------------DNIKSFHQWHHWK-----RIVTT 141
D ++SF + WK +IV
Sbjct: 121 ERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVAN 180
Query: 142 VPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAI 201
+ + R S +L + + ISST I
Sbjct: 181 YGLICVTRAGNDAQKFIYE--------------SDVLWKHRSNIHVVNEWIANDISSTKI 226
Query: 202 RKKIIEQDNTRTL 214
R+ + + R L
Sbjct: 227 RRALRRGQSIRYL 239
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
1kaq_A*
Length = 194
Score = 75.1 bits (183), Expect = 1e-14
Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 28/199 (14%)
Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL 77
KIG+FGG F+PPH+GH+ +A + + LD++W++ K + R+ +
Sbjct: 5 GSKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEM 64
Query: 78 SQSLIKNPRIRITAF--EAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHW 135
+ I++ + TF T+ +K+ + +I+GAD I+ +W+
Sbjct: 65 LKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKL 124
Query: 136 KRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHI 195
++ + + R P LF
Sbjct: 125 DELLNLIQFIGVKRPGFHVET--------------------------PYPLLFADVPEFE 158
Query: 196 ISSTAIRKKIIEQDNTRTL 214
+SST IR++ + T L
Sbjct: 159 VSSTMIRERFKSKKPTDYL 177
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 65.5 bits (158), Expect = 8e-12
Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 28/196 (14%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80
KI L+GG FNP H H+ +A +L D+ +++ + + +K ++ ++ R+++ Q
Sbjct: 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQM 62
Query: 81 LIKNPRIRITAFEAYL--NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138
+I + + T+ TI K+ +K +++G D +W+ + +
Sbjct: 63 IIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYL 122
Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISS 198
V +++R + N + + I ISS
Sbjct: 123 KEMVTFVVVNRDKNSQNV--------------------------ENAMIAIQIPRVDISS 156
Query: 199 TAIRKKIIEQDNTRTL 214
T IR+++ E + + L
Sbjct: 157 TMIRQRVSEGKSIQVL 172
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
genomics, PSI, MCSG, protein structure initiative; 1.91A
{Methanocaldococcus jannaschii DSM2661}
Length = 357
Score = 61.9 bits (150), Expect = 1e-10
Identities = 20/216 (9%), Positives = 51/216 (23%), Gaps = 20/216 (9%)
Query: 5 QSLQDIMRMPK-VEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK 63
+ + I+ K E KI +NP H GH + + ++ + P +
Sbjct: 36 KDFKKIVEEIKERENKDKIVCDFTEYNPLHKGHKYALEKGKE----HGIFISVLPGPLER 91
Query: 64 NYNLSSSL---EKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWI 120
+ R ++ + + + I +
Sbjct: 92 SGRGIPYFLNRYIRAEMAIRAGADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGY 151
Query: 121 MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT 180
+ ++ + + + + + + + +
Sbjct: 152 IPEKTMEKVIDCINKGYHIQV------KPYKIICIETGEILGEKLNIDNYVIASMSQMIY 205
Query: 181 TSPPSWLFIHDRHH------IISSTAIRKKIIEQDN 210
L + + IS T IR+ I
Sbjct: 206 KLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKF 241
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two
individual domains; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 60.6 bits (146), Expect = 3e-10
Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 7/160 (4%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL-S 78
+ G++ G F P H GH+ +A++K +Q+ I+ + +R+++
Sbjct: 7 YQYGIYIGRFQPFHLGHLRTLNLALEK--AEQVIIILGSHRVAADTRNPWRSPERMAMIE 64
Query: 79 QSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138
L R+ + ++ + G++++
Sbjct: 65 ACLSPQILKRVHFLTV----RDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSY 120
Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
+ + SS + + + +
Sbjct: 121 YLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKV 160
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 60.5 bits (146), Expect = 3e-10
Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 18/160 (11%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
++ G G F P H GH+E+ + ++ +D++ I + +RI +
Sbjct: 1 LR-GFIIGRFQPFHKGHLEVIKKIAEE--VDEIIIGIGSAQKSHTLENPFTAGERILMIT 57
Query: 80 SLIKN-PRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138
+K+ + + V+ + V G ++ + ++
Sbjct: 58 QSLKDYDLTYYPIPIKDIEFNS--IWVSYVESLTPPFDIV-YSGNPLVRVLFEERGYEVK 114
Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
S + E H++
Sbjct: 115 RP---------EMFNRKEYSGTEIR--RRMLNGEKWEHLV 143
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus
influenzae} SCOP: c.26.1.3 c.37.1.1
Length = 365
Score = 59.3 bits (143), Expect = 6e-10
Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 35/188 (18%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80
K+G+ G F P H GHI + A K +D+L I+ S KR+
Sbjct: 3 KVGVIFGKFYPVHTGHINMIYEAFSK--VDELHVIVCSDTVRDLKLFYDSKMKRM----- 55
Query: 81 LIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSF-HQWHHWKRIV 139
+ + Q+ K+ K+ F+ + D I S+ + W W V
Sbjct: 56 ---------------PTVQDRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAV 100
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISST 199
T+ + F SS Y + + + +S+T
Sbjct: 101 KTLFHEKHFEPSIVF---SSEPQDKAPYEKYLGLEVSL---------VDPDRTFFNVSAT 148
Query: 200 AIRKKIIE 207
IR +
Sbjct: 149 KIRTTPFQ 156
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD,
nucleotidyltransferase, pyridine nucleotide
biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3e27_A* 2qtn_A* 2qtm_A*
Length = 189
Score = 59.4 bits (142), Expect = 7e-10
Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 28/196 (14%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIIT--PFNSVKNYNLSSSLEKRISLS 78
KIG+ GG F+PPH+GH+ IA LNL+++W++ P + S ++
Sbjct: 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLEL 62
Query: 79 QSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138
+ + + + T+ T+LQ+ K V F +I+G D ++ +W++ + +
Sbjct: 63 ATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEAL 122
Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISS 198
+ V + +P + +SS
Sbjct: 123 LDLVTFVGV--------------------------ARPGYKLRTPYPITTVEIPEFAVSS 156
Query: 199 TAIRKKIIEQDNTRTL 214
+ +R++ E+ + L
Sbjct: 157 SLLRERYKEKKTCKYL 172
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacterthermautotrophicus} SCOP: c.26.1.3
PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Length = 181
Score = 57.8 bits (139), Expect = 2e-09
Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 16/160 (10%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS-LSQ 79
GL G P H GH+++ + +++ +D+L I + + +R+ L++
Sbjct: 4 MRGLLVGRMQPFHRGHLQVIKSILEE--VDELIICIGSAQLSHSIRDPFTAGERVMMLTK 61
Query: 80 SLIKNPRIRITAFEAYLNHTE-TFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138
+L +N + + E + +K + V + +R+
Sbjct: 62 ALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRV----------YSGNPLVQRL 111
Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
+ + + S + D +L
Sbjct: 112 FSEDGYEVTAPPLFYRDRYSGTEVR--RRMLDDGDWRSLL 149
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structural genomics, PSI; 1.65A
{Vibrio parahaemolyticus}
Length = 177
Score = 56.9 bits (136), Expect = 3e-09
Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 17/178 (9%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSS-----LEKRI 75
KI +FG FNPP GH + + + D + + ++ L ++ I
Sbjct: 3 KIAIFGSAFNPPSLGHKSVIESL---SHFDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFI 59
Query: 76 SLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHW 135
A T+ + ++++ + + +++G DN F +++
Sbjct: 60 KDMGLSNVQRSDLEQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKA 119
Query: 136 KRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRH 193
+ I + I S + + +S +P + +
Sbjct: 120 EEITERWTVMACPE----KVKIRSTDIR--NALIEGKDISTYT---TPTVSELLLNEG 168
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle
structural genomics center for infectious disease,
coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia
pseudomallei 1710B} PDB: 3ikz_A*
Length = 170
Score = 55.4 bits (132), Expect = 9e-09
Identities = 17/159 (10%), Positives = 42/159 (26%), Gaps = 14/159 (8%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
M + ++ G F+P GH ++ + A + + + L
Sbjct: 5 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGH 64
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
+ + + +D F + ++
Sbjct: 65 Y-----------PNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLL 113
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
V + + +IS + + E A+L +S +
Sbjct: 114 PDVET-MFMTPSDQYQFISGTIVR--EIAQLGGDVSKFV 149
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A
{Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Length = 177
Score = 55.1 bits (132), Expect = 1e-08
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 15/157 (9%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
M + G+F+P GH++I + A + N K L++RI++ +
Sbjct: 21 MTGAVCPGSFDPVTLGHVDIFERA---AAQFDEVVVAILVNPAKTGMF--DLDERIAMVK 75
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
+ + ++ G D K I
Sbjct: 76 ESTTHLP------NLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA 129
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSH 176
+ ++++SS +AK E A L +S
Sbjct: 130 GVDTFFVATAPR--YSFVSSSLAK--EVAMLGGDVSE 162
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Length = 169
Score = 53.0 bits (126), Expect = 5e-08
Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
I + G+F+P +GH++I + +Q++ + + + S+E+R
Sbjct: 2 ASIAVCPGSFDPVTYGHLDIIKRGAH--IFEQVYVCVLNNS---SKKPLFSVEER----- 51
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
+ R T I ++ N + + + Q R++
Sbjct: 52 --CELLREVTKDIPNITVETSQGLLIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVL 109
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
+ ++++SS + K E AR D S+S +
Sbjct: 110 DESIETFFMMANNQYSFLSSSIVK--EVARYDGSVSEFV 146
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A
biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A
{Thermus thermophilus} SCOP: c.26.1.3
Length = 160
Score = 52.5 bits (125), Expect = 8e-08
Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
M + ++ G+F+P +GH+++ Q A + +++ + S + L S+ E+
Sbjct: 1 MHV-VYPGSFDPLTNGHLDVIQRASR--LFEKVTVAVLENPSKRGQYLFSAEERLA---- 53
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
R T + + V++ + + + Q H R +
Sbjct: 54 ----IIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQL 109
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
+ ++++SS M K E AR +S ++
Sbjct: 110 YPGLETLFILAATRYSFVSSTMVK--EIARYGGDVSKLV 146
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis,
nucleotidyltransferase; HET: PNS; 1.64A {Escherichia
coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A*
Length = 158
Score = 50.2 bits (119), Expect = 4e-07
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 22/162 (13%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80
K ++ G F+P +GHI+I A + + L +P +LE+R++L+Q
Sbjct: 2 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPS-----KKPMFTLEERVALAQQ 56
Query: 81 LIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMG----ADNIKSFHQWHHWK 136
+ N + L V I G AD H +
Sbjct: 57 ATAHLG----------NVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNR 106
Query: 137 RIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
++ + + +++ISS + K E AR ++H L
Sbjct: 107 HLMPELES-VFLMPSKEWSFISSSLVK--EVARHQGDVTHFL 145
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A
biosynthetic pathway, coenzyme A biosynthesis,
cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A
{Staphylococcus aureus}
Length = 168
Score = 50.0 bits (118), Expect = 4e-07
Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 14/159 (8%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
I + G+F+P +GH++I + + + + + + S E+ + Q
Sbjct: 3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSK----KEGTFSLEERMDLIEQ 58
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
S+ P +++ F L + + ++V+ + + + +
Sbjct: 59 SVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLY 118
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
+ISS + K E A +S +
Sbjct: 119 MMSSTNYS--------FISSSIVK--EVAAYRADISEFV 147
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 47.9 bits (113), Expect = 2e-06
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRI-- 75
P I +F G F P H GH+ IA++ ++ I + N S E+R
Sbjct: 5 PMYDISVFIGRFQPFHKGHLHNIIIALQN--SKKVIINIGSCFNTPNIKNPFSFEQRKQM 62
Query: 76 ---SLSQSLIKNPRIRITAFEAYLNHTETFHTILQ-----VKKHNKSVNFV---WIMGAD 124
L + I + I Y + + L+ K+N S+ V +
Sbjct: 63 IESDLQVAGIDLDTVVIEPLADYFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIKDSSSY 122
Query: 125 NIKSFHQWHH 134
I+SF +W +
Sbjct: 123 YIRSFPEWDY 132
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural
genomics, JCSG, protein structure initiative, PSI; HET:
PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Length = 173
Score = 46.8 bits (110), Expect = 3e-06
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 15/157 (9%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
MK ++ G+F+P GH++I + A+ D+L ++T K +LE+R L +
Sbjct: 13 MK-AVYPGSFDPITLGHVDIIKRALS--IFDELVVLVTENPRKKCMF---TLEERKKLIE 66
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
++ + L ++V + + + +
Sbjct: 67 EVLSDLDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANK--KLYSDLE 124
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSH 176
T + F++ISS + K E A ++
Sbjct: 125 T-----VFLIASEKFSFISSSLVK--EVALYGGDVTE 154
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
function, structural genomics, MCSG, PSI-2, protein
structure initiative; 1.60A {Archaeoglobus fulgidus}
Length = 148
Score = 44.2 bits (103), Expect = 3e-05
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 7/140 (5%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
MK+ L GG F P H GH ++ +AIK D + + + R +
Sbjct: 1 MKVAL-GGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRA---E 56
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
++ + + + T + L V V+ A I + ++I
Sbjct: 57 NVKRYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPETYEMALKINQKREELGKRKIT 116
Query: 140 TTVPIAIIDRFDVTFNYISS 159
+ + ISS
Sbjct: 117 I---VKVDWMMAEDGKPISS 133
>1tfu_A Phosphopantetheine adenylyltransferase; transport protein,
structural genomics, PSI, protein structure initiative;
1.99A {Mycobacterium tuberculosis} SCOP: c.26.1.3
Length = 157
Score = 43.8 bits (102), Expect = 3e-05
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 15/159 (9%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
M + G+F+P GH++I + A + + + ++ P + +
Sbjct: 1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDL-----------DE 49
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139
+ + ++ G D K I
Sbjct: 50 RIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA 109
Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178
++++SS +AK E A L +S +L
Sbjct: 110 GVDT--FFVATAPRYSFVSSSLAK--EVAMLGGDVSELL 144
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 31.6 bits (71), Expect = 0.16
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 6 SLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY 65
++++ R E +++ G F+ H GH A L + N+
Sbjct: 63 TMEEACRGTPCERPVRV-YADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNF 121
>3glv_A Lipopolysaccharide core biosynthesis protein; structural
genomics, PSI, MCSG, protein structure initiative; HET:
AMP; 1.99A {Thermoplasma volcanium GSS1}
Length = 143
Score = 30.4 bits (67), Expect = 0.31
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60
GM + G F+ H GHI + + K + +
Sbjct: 1 GMIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTA 42
>1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A*
Length = 355
Score = 30.3 bits (67), Expect = 0.34
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 20 MKIGLFGGNFNPPHHGH-------IEIAQIAIKKLNLDQLW 53
MK G F + PP + + + + + D +W
Sbjct: 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKAS-EGCGFDTVW 40
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
{Staphylococcus aureus}
Length = 132
Score = 29.8 bits (66), Expect = 0.42
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLW 53
MK + G ++ H+GHIE+ + A + + +
Sbjct: 1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVA 34
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Length = 129
Score = 29.8 bits (66), Expect = 0.49
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIK 45
MK + G F+ H GHI++ + A +
Sbjct: 1 MKKVITYGTFDLLHWGHIKLLERAKQ 26
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP,
CTP, phosphoethanolamine, SGC, structural genomics
consortium; HET: C5P; 2.00A {Homo sapiens}
Length = 341
Score = 29.5 bits (66), Expect = 0.58
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 1 MQQSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60
+Q SQ + + +PG + G F+ H GH++ + + + +
Sbjct: 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQ 238
Query: 61 SVKNY 65
V +Y
Sbjct: 239 EVNHY 243
Score = 25.7 bits (56), Expect = 9.5
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 27 GNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY 65
G ++ H+GH + A + + D L + + +
Sbjct: 14 GCYDMVHYGHSNQLRQA-RAMG-DYLIVGVHTDEEIAKH 50
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing factor, RAS-specific
nucleotide exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 28.8 bits (64), Expect = 1.0
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 89 ITAFEAYLNHTETF--HTILQVKKHNKSVNFV--WIMGADNIKSFHQWHHWKRIVTTVPI 144
I + NH F I++ + + + + W+ AD + H ++ I +++
Sbjct: 46 IMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINR 105
Query: 145 AIIDRFDVTFNYISSPMAKTFE-----------YARLDESLSHILCTTSPPSWLFIHDRH 193
+ I R T+ +S + + L ESL + P +++ D
Sbjct: 106 SAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLV 165
Query: 194 HI 195
I
Sbjct: 166 FI 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 28.4 bits (63), Expect = 1.4
Identities = 44/247 (17%), Positives = 78/247 (31%), Gaps = 104/247 (42%)
Query: 24 LFGG--NFN-------------PPHHGHIE--IAQIAIKKLN----------------LD 50
+FGG N + + I A + L+ L+
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVL---VGDLIKFSA-ETLSELIRTTLDAEKVFTQGLN 214
Query: 51 QLWWIITPFNSV--KNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTIL-- 106
L W+ P ++ K+Y LS IS P I + Y T +L
Sbjct: 215 ILEWLENP-SNTPDKDYLLSIP----ISC-------PLIGVIQLAHY---VVTAK-LLGF 258
Query: 107 ---QVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAK 163
+++ + G H + +VT V IA D ++ +F ++S A
Sbjct: 259 TPGELRSY-----LKGATG-----------HSQGLVTAVAIAETDSWE-SF-FVSVRKAI 300
Query: 164 T--FE--------YAR-------LDESLSHILCTTSPPSW-LFIHDRHHIISSTAIRKKI 205
T F Y L++SL + PS L I + ++ + +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLEN---NEGVPSPMLSISN----LTQEQV-QDY 352
Query: 206 IEQDNTR 212
+ + N+
Sbjct: 353 VNKTNSH 359
Score = 27.6 bits (61), Expect = 2.3
Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 87/218 (39%)
Query: 33 HHGHIEIAQIAIKK---LNLDQLWWIITPF---------NSVKNYNLSSSLE-------- 72
HG +E + + QL F + ++ E
Sbjct: 12 SHGSLEHV-LLVPTASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 73 -------KRISLSQSLIKNPRIRITAFE-AYLNHTETFHTIL----------QVKKHNKS 114
++ ++ + +T FE YL + H + VK K
Sbjct: 68 VSSLVEPSKVGQFDQVLN---LCLTEFENCYLEGND-IHALAAKLLQENDTTLVKT--KE 121
Query: 115 VNFVWIMGADNIKSFHQWHHW--KRIVTTVPIAIIDRFDVTFNYISSPMAKTF------- 165
+ IK++ + A+ F + A+
Sbjct: 122 L----------IKNYITARIMAKRPFDKKSNSAL-------FRAVGEGNAQLVAIFGGQG 164
Query: 166 ---EYARLDESLSHILCTTSPPSWLFIHDRHHIISSTA 200
+Y +E L + T + D +I +A
Sbjct: 165 NTDDY--FEE-LRDLYQTYHV----LVGD---LIKFSA 192
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 27.9 bits (61), Expect = 1.9
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 20 MKIGLFGGNFNPPHHGH-------IEIAQIAIKKLNLDQLW 53
M+ GL + P I+ A A + +D +
Sbjct: 3 METGLIFHPYMRPGRSARQTFDWGIKSAVQA-DSVGIDSMM 42
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.5 bits (61), Expect = 2.4
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 38 EIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89
+ + + ++ + LS RISL++++ K+ + +
Sbjct: 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 153
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 27.4 bits (60), Expect = 2.7
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 88 RITAFEAYLNHTETF--HTILQVKKHNKSVNFV--WIMGADNIKSFHQWHHWKRIVTTVP 143
+ F N + + + + +K V + +I A + K + + + IV +
Sbjct: 495 NLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLS 554
Query: 144 IAIIDRFDVTFNYISSPMAKTFEY 167
+ R +T+ + S K +
Sbjct: 555 NVAVSRLALTWEKLPSKFKKFYAE 578
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 27.4 bits (60), Expect = 2.9
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 31 PPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS------LSQSLIKN 84
PP G + ++ Y IS +S+ L+++
Sbjct: 224 PPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRD 283
Query: 85 PRIRITAFEAYLNH 98
+ R++A + L H
Sbjct: 284 AKQRLSAAQV-LQH 296
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3fbv_A*
Length = 434
Score = 27.3 bits (60), Expect = 3.0
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 31 PPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRIT 90
P + + I +LD++ + + +L +SQ + +P R T
Sbjct: 239 PFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDL---------ISQMIDHDPLKRPT 289
Query: 91 AFEAYLNH 98
A + L H
Sbjct: 290 AMKV-LRH 296
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 27.2 bits (60), Expect = 3.3
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 38 EIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRIT--AFEAY 95
+ Q +L+ L K NLS ++R+SL++++ N I + A
Sbjct: 99 SVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
Query: 96 LNHTE 100
H
Sbjct: 159 DAHVG 163
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 27.1 bits (59), Expect = 3.5
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 20 MKIGLFGGNFNPPHHGH-------IEIAQIAIKKLNLDQLW 53
MK GLF NF ++ A +L D L
Sbjct: 1 MKFGLFFLNFMNSKRSSDQVIEEMLDTAHYV-DQLKFDTLA 40
>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice
dwarf virus} SCOP: e.28.1.2
Length = 1019
Score = 26.9 bits (59), Expect = 4.0
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 121 MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT 180
+G + FH +K I V + + + DV + S + +F R D L +
Sbjct: 686 LGRNPADIFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQ 745
Query: 181 TSPPSWLFIHDR 192
P + I +
Sbjct: 746 RLPNLYSVIMTQ 757
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor; HET: BK3; 1.98A {Cryptosporidium
parvum iowa II} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 26.8 bits (59), Expect = 4.4
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 48 NLDQLWWIIT---PFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNH 98
D L + T F+ + +S K + + + L +P +RITA + L H
Sbjct: 227 EYDILKRVETGKYAFDLPQWRTISDDA-KDL-IRKMLTFHPSLRITATQC-LEH 277
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 2etf_A 1z0h_A 2nm1_A
3g94_A 1f82_A
Length = 1290
Score = 26.4 bits (58), Expect = 4.5
Identities = 9/73 (12%), Positives = 27/73 (36%)
Query: 62 VKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIM 121
++ + + ++ I N + ++ + T++ + KSV F + +
Sbjct: 931 IRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNI 990
Query: 122 GADNIKSFHQWHH 134
D + ++W
Sbjct: 991 REDISEYINRWFF 1003
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A*
Length = 351
Score = 26.5 bits (58), Expect = 4.7
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 31 PPHHGHIEIAQIA-IKKLNLD---QLWWIITPFNSVKNYNLSSSLEKRIS---------- 76
P G+ E Q+A I +L ++W + + + L ++++
Sbjct: 227 PIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDP 286
Query: 77 -----LSQSLIKNPRIRITAFEAYLNH 98
+ + L+ +P RI + +A LNH
Sbjct: 287 YALDLIDKLLVLDPAQRIDSDDA-LNH 312
>3elj_A Mitogen-activated protein kinase 8; C-JUN N-terminal kinase,
alternative splicing, ATP-binding, nucleotide- binding,
phosphoprotein, polymorphism; HET: GS7; 1.80A {Homo
sapiens} PDB: 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 1ukh_A
1uki_A* 2zdt_A* 2o2u_A* 2waj_A* 2o0u_A* 2zdu_A* 3da6_A*
3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A*
1pmn_A* ...
Length = 369
Score = 26.4 bits (57), Expect = 4.9
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 3 QSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV 62
+ D + G F P ++E ++ P +S
Sbjct: 231 PGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSE 290
Query: 63 KNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNH 98
N +S R LS+ L+ + RI+ EA L H
Sbjct: 291 HNKLKASQA--RDLLSKMLVIDASKRISVDEA-LQH 323
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph,
bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia
pachyptila} SCOP: b.122.1.3 c.26.1.5
Length = 396
Score = 26.2 bits (57), Expect = 6.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 30 NPPHHGHIEIAQIAIKKLNLDQLW 53
NP H H E+ ++A++ L+ D +
Sbjct: 202 NPMHRAHEELCRMAMESLDADGVV 225
>2vx3_A Dual specificity tyrosine-phosphorylation- regulated kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, ATP-binding; HET: PTR D15 P2K; 2.40A
{Homo sapiens} PDB: 2wo6_A*
Length = 382
Score = 26.1 bits (56), Expect = 6.5
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
+ + L +P+ RI + A L H
Sbjct: 353 ILRMLDYDPKTRIQPYYA-LQH 373
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural
genomics CON SGC; 2.05A {Plasmodium berghei}
Length = 432
Score = 25.8 bits (56), Expect = 6.8
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
L L NP RIT +A L+H
Sbjct: 342 LESMLKFNPNKRITIDQA-LDH 362
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 26.0 bits (56), Expect = 6.9
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80
+I G + + + + N + W N +++L + E LS
Sbjct: 243 EIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPW----SNVFSDHSLKDAKEAYDLLSAL 298
Query: 81 LIKNPRIRITAFEAYLNH 98
L P R+ +EA L H
Sbjct: 299 LQYLPEERMKPYEA-LCH 315
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) class, TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Length = 359
Score = 26.0 bits (57), Expect = 7.0
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL 77
P M + N P K++ +I K LS ++R++L
Sbjct: 88 PHMTVF---ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVAL 144
Query: 78 SQSLIKNPRIRITAFEAY--LNHTETFHTILQVKKHNKSVNFVWIM 121
+++L+K P++ + E L+ ++K + + +
Sbjct: 145 ARALVKQPKV-LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 26.1 bits (57), Expect = 7.0
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
L L +P +R + E L H
Sbjct: 336 LYSILQIDPTLRPSPAEL-LKH 356
>3kxj_A Casein kinase II subunit alpha; protein kinase CK2-inhibitor
complex, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase; HET: K68; 1.50A {Zea
mays} PDB: 1day_A* 1daw_A* 1m2q_A* 3kxg_A* 3kxh_A*
1m2r_A* 3kxm_A* 3kxn_A* 1om1_A* 1ds5_A* 1f0q_A* 1j91_A
1jam_A* 1lpu_A 1lr4_A 1lp4_A* 1zoe_A* 1zog_A* 1zoh_A*
2oxd_A* ...
Length = 327
Score = 25.7 bits (56), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
L + L + + R+TA EA + H
Sbjct: 295 LDKLLRYDHQERLTALEA-MTH 315
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation- regulated kinase
2; KI-(Y)-phosphorylation regulated kinase 2, PSK-H2;
HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 25.9 bits (56), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
L Q L +P +R+T +A L H
Sbjct: 389 LKQCLEWDPAVRMTPGQA-LRH 409
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 25.7 bits (56), Expect = 7.9
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 12 RMPKVEPGMKIGLFGGNF-------NPPHHGHIEIAQIAIKKLN 48
R+ E K + NP H+GH + Q K+L
Sbjct: 397 RLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLL 440
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A*
1q3d_A* 1q4l_A* 1q5k_A* 3i4b_A* 1r0e_A* 1gng_A* 2o5k_A*
2ow3_A* 3f7z_A* 1h8f_A* 3f88_A* 1uv5_A* 1o9u_A*
Length = 420
Score = 25.6 bits (55), Expect = 8.8
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 17/84 (20%)
Query: 31 PPHHGHIEIAQ----IAIKKLNLDQLWWIITP------FNSVKNYNLSSSLEKRIS---- 76
P G + Q I + + + P F +K + + R
Sbjct: 255 PIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAI 314
Query: 77 --LSQSLIKNPRIRITAFEAYLNH 98
S+ L P R+T EA H
Sbjct: 315 ALCSRLLEYTPTARLTPLEA-CAH 337
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 25.7 bits (56), Expect = 8.9
Identities = 9/69 (13%), Positives = 24/69 (34%)
Query: 30 NPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89
NP H H E+ + A++K+ L + + ++ + + L + + +
Sbjct: 173 NPMHRVHEELTKRAMEKVGGGLLLHPVVGLTKPGDVDVYTRMRIYKVLYEKYYDKKKTIL 232
Query: 90 TAFEAYLNH 98
+
Sbjct: 233 AFLPLAMRM 241
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK,
phosphotyrosine picked threonine kinase, SGC, structural
genomics consortium, ATP-binding; HET: 7PE; 2.30A {Homo
sapiens} PDB: 3gfw_A* 3h9f_A*
Length = 313
Score = 25.3 bits (55), Expect = 9.4
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 48 NLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNH 98
+ +L II P + ++ ++ + + L L ++P+ RI+ E L H
Sbjct: 245 QISKLHAIIDPNHEIEFPDIPEKDLQDV-LKCCLKRDPKQRISIPEL-LAH 293
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Staphylococcus aureus subsp}
PDB: 2qkr_A*
Length = 311
Score = 25.6 bits (56), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 77 LSQSLIKNPRIRITAFEAYLNH 98
LS L +P RI+A +A +NH
Sbjct: 281 LSNMLCFDPNKRISARDA-MNH 301
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.135 0.419
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,988,458
Number of extensions: 89215
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 129
Length of query: 216
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 127
Effective length of database: 3,535,514
Effective search space: 449010278
Effective search space used: 449010278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)