RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Length = 242 Score = 108 bits (271), Expect = 8e-25 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 6/198 (3%) Query: 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLS 78 G +IGLFGG F+P H GH+ A ++ LD+L + + S+ ++ + Sbjct: 22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVE 81 Query: 79 QSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVN--FVWIMGADNIKSFHQWHHWK 136 +++ R+ + E + L+ + + + ++G D WH W+ Sbjct: 82 RAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWE 141 Query: 137 RIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHII 196 ++ I ++ R D S + D F+ + Sbjct: 142 ALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALK----GPGGQITFVWQTPLAV 197 Query: 197 SSTAIRKKIIEQDNTRTL 214 S+T IR + + R L Sbjct: 198 SATQIRALLGAGRSVRFL 215 >1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Length = 213 Score = 94.3 bits (233), Expect = 2e-20 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 4/196 (2%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80 LFGG F+P H+GH++ + + L ++ I + ++S++++ L + Sbjct: 4 LQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELA 63 Query: 81 LIKNPRIRITAFEAYLNHTETFHTILQVKK--HNKSVNFVWIMGADNIKSFHQWHHWKRI 138 + P + E N L+ + V +I+G D++ +F W+ ++ I Sbjct: 64 IADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETI 123 Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISS 198 + + + R + E L IS+ Sbjct: 124 LDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHN--PEDLHLQPAGKIYLAETPWFNISA 181 Query: 199 TAIRKKIIEQDNTRTL 214 T IR+++ ++ L Sbjct: 182 TIIRERLQNGESCEDL 197 >1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Length = 252 Score = 88.8 bits (219), Expect = 9e-19 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 46/227 (20%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW----IITPFNSVKNYNLSSSLEKRI 75 + L G+FNP + H+ + ++A L+ ++ II+P N ++ R+ Sbjct: 6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRV 65 Query: 76 SLSQSLIK-NPRIRITAFEAYLN-HTETFHTILQVKK---------------------HN 112 ++++ ++ + IR+ +E+ ET + Sbjct: 66 AMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPA 125 Query: 113 KSVNFVWIMGADNIKSFHQWHHWK-----RIVTTVPIAIIDRFDVTFNYISSPMAKTFEY 167 + GAD +K+F + WK IV + + R P E Sbjct: 126 AVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVS------HDPKGYIAES 179 Query: 168 ARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL 214 L +I P + IS+T IR+ + + + + L Sbjct: 180 PILRMHQHNIHLAKEPV--------QNEISATYIRRALGQGQSVKYL 218 >1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Length = 279 Score = 82.6 bits (203), Expect = 7e-17 Identities = 36/253 (14%), Positives = 74/253 (29%), Gaps = 65/253 (25%) Query: 13 MPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLN----LDQLWWIITPFNSVKNYNLS 68 M E + L G+FNP + H+ + ++A +N + II+P Sbjct: 1 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGL 60 Query: 69 SSLEKRISLSQSLIK-NPRIRITAFEAYL-NHTETFHTILQVKKHNKSVNFVWIMGA--- 123 R+ +++ K + + + +E+ ET + ++ ++ + + Sbjct: 61 IPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTL 120 Query: 124 -------------------------------------DNIKSFHQWHHWK-----RIVTT 141 D ++SF + WK +IV Sbjct: 121 ERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVAN 180 Query: 142 VPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAI 201 + + R S +L + + ISST I Sbjct: 181 YGLICVTRAGNDAQKFIYE--------------SDVLWKHRSNIHVVNEWIANDISSTKI 226 Query: 202 RKKIIEQDNTRTL 214 R+ + + R L Sbjct: 227 RRALRRGQSIRYL 239 >1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Length = 194 Score = 75.1 bits (183), Expect = 1e-14 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 28/199 (14%) Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL 77 KIG+FGG F+PPH+GH+ +A + + LD++W++ K + R+ + Sbjct: 5 GSKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEM 64 Query: 78 SQSLIKNPRIRITAF--EAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHW 135 + I++ + TF T+ +K+ + +I+GAD I+ +W+ Sbjct: 65 LKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKL 124 Query: 136 KRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHI 195 ++ + + R P LF Sbjct: 125 DELLNLIQFIGVKRPGFHVET--------------------------PYPLLFADVPEFE 158 Query: 196 ISSTAIRKKIIEQDNTRTL 214 +SST IR++ + T L Sbjct: 159 VSSTMIRERFKSKKPTDYL 177 >2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Length = 189 Score = 65.5 bits (158), Expect = 8e-12 Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 28/196 (14%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80 KI L+GG FNP H H+ +A +L D+ +++ + + +K ++ ++ R+++ Q Sbjct: 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQM 62 Query: 81 LIKNPRIRITAFEAYL--NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138 +I + + T+ TI K+ +K +++G D +W+ + + Sbjct: 63 IIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYL 122 Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISS 198 V +++R + N + + I ISS Sbjct: 123 KEMVTFVVVNRDKNSQNV--------------------------ENAMIAIQIPRVDISS 156 Query: 199 TAIRKKIIEQDNTRTL 214 T IR+++ E + + L Sbjct: 157 TMIRQRVSEGKSIQVL 172 >3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661} Length = 357 Score = 61.9 bits (150), Expect = 1e-10 Identities = 20/216 (9%), Positives = 51/216 (23%), Gaps = 20/216 (9%) Query: 5 QSLQDIMRMPK-VEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK 63 + + I+ K E KI +NP H GH + + ++ + P + Sbjct: 36 KDFKKIVEEIKERENKDKIVCDFTEYNPLHKGHKYALEKGKE----HGIFISVLPGPLER 91 Query: 64 NYNLSSSL---EKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWI 120 + R ++ + + + I + Sbjct: 92 SGRGIPYFLNRYIRAEMAIRAGADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGY 151 Query: 121 MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT 180 + ++ + + + + + + + + Sbjct: 152 IPEKTMEKVIDCINKGYHIQV------KPYKIICIETGEILGEKLNIDNYVIASMSQMIY 205 Query: 181 TSPPSWLFIHDRHH------IISSTAIRKKIIEQDN 210 L + + IS T IR+ I Sbjct: 206 KLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKF 241 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341 Score = 60.6 bits (146), Expect = 3e-10 Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 7/160 (4%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL-S 78 + G++ G F P H GH+ +A++K +Q+ I+ + +R+++ Sbjct: 7 YQYGIYIGRFQPFHLGHLRTLNLALEK--AEQVIIILGSHRVAADTRNPWRSPERMAMIE 64 Query: 79 QSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138 L R+ + ++ + G++++ Sbjct: 65 ACLSPQILKRVHFLTV----RDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSY 120 Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 + + SS + + + + Sbjct: 121 YLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKV 160 >1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168 Score = 60.5 bits (146), Expect = 3e-10 Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 18/160 (11%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 ++ G G F P H GH+E+ + ++ +D++ I + +RI + Sbjct: 1 LR-GFIIGRFQPFHKGHLEVIKKIAEE--VDEIIIGIGSAQKSHTLENPFTAGERILMIT 57 Query: 80 SLIKN-PRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138 +K+ + + V+ + V G ++ + ++ Sbjct: 58 QSLKDYDLTYYPIPIKDIEFNS--IWVSYVESLTPPFDIV-YSGNPLVRVLFEERGYEVK 114 Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 S + E H++ Sbjct: 115 RP---------EMFNRKEYSGTEIR--RRMLNGEKWEHLV 143 >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365 Score = 59.3 bits (143), Expect = 6e-10 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 35/188 (18%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80 K+G+ G F P H GHI + A K +D+L I+ S KR+ Sbjct: 3 KVGVIFGKFYPVHTGHINMIYEAFSK--VDELHVIVCSDTVRDLKLFYDSKMKRM----- 55 Query: 81 LIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSF-HQWHHWKRIV 139 + + Q+ K+ K+ F+ + D I S+ + W W V Sbjct: 56 ---------------PTVQDRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAV 100 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISST 199 T+ + F SS Y + + + +S+T Sbjct: 101 KTLFHEKHFEPSIVF---SSEPQDKAPYEKYLGLEVSL---------VDPDRTFFNVSAT 148 Query: 200 AIRKKIIE 207 IR + Sbjct: 149 KIRTTPFQ 156 >2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3e27_A* 2qtn_A* 2qtm_A* Length = 189 Score = 59.4 bits (142), Expect = 7e-10 Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 28/196 (14%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIIT--PFNSVKNYNLSSSLEKRISLS 78 KIG+ GG F+PPH+GH+ IA LNL+++W++ P + S ++ Sbjct: 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLEL 62 Query: 79 QSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138 + + + + T+ T+LQ+ K V F +I+G D ++ +W++ + + Sbjct: 63 ATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEAL 122 Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISS 198 + V + +P + +SS Sbjct: 123 LDLVTFVGV--------------------------ARPGYKLRTPYPITTVEIPEFAVSS 156 Query: 199 TAIRKKIIEQDNTRTL 214 + +R++ E+ + L Sbjct: 157 SLLRERYKEKKTCKYL 172 >1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Length = 181 Score = 57.8 bits (139), Expect = 2e-09 Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 16/160 (10%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS-LSQ 79 GL G P H GH+++ + +++ +D+L I + + +R+ L++ Sbjct: 4 MRGLLVGRMQPFHRGHLQVIKSILEE--VDELIICIGSAQLSHSIRDPFTAGERVMMLTK 61 Query: 80 SLIKNPRIRITAFEAYLNHTE-TFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRI 138 +L +N + + E + +K + V + +R+ Sbjct: 62 ALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRV----------YSGNPLVQRL 111 Query: 139 VTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 + + + S + D +L Sbjct: 112 FSEDGYEVTAPPLFYRDRYSGTEVR--RRMLDDGDWRSLL 149 >3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus} Length = 177 Score = 56.9 bits (136), Expect = 3e-09 Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 17/178 (9%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSS-----LEKRI 75 KI +FG FNPP GH + + + D + + ++ L ++ I Sbjct: 3 KIAIFGSAFNPPSLGHKSVIESL---SHFDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFI 59 Query: 76 SLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHW 135 A T+ + ++++ + + +++G DN F +++ Sbjct: 60 KDMGLSNVQRSDLEQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKA 119 Query: 136 KRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRH 193 + I + I S + + +S +P + + Sbjct: 120 EEITERWTVMACPE----KVKIRSTDIR--NALIEGKDISTYT---TPTVSELLLNEG 168 >3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A* Length = 170 Score = 55.4 bits (132), Expect = 9e-09 Identities = 17/159 (10%), Positives = 42/159 (26%), Gaps = 14/159 (8%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 M + ++ G F+P GH ++ + A + + + L Sbjct: 5 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGH 64 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 + + + +D F + ++ Sbjct: 65 Y-----------PNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLL 113 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 V + + +IS + + E A+L +S + Sbjct: 114 PDVET-MFMTPSDQYQFISGTIVR--EIAQLGGDVSKFV 149 >3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A Length = 177 Score = 55.1 bits (132), Expect = 1e-08 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 15/157 (9%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 M + G+F+P GH++I + A + N K L++RI++ + Sbjct: 21 MTGAVCPGSFDPVTLGHVDIFERA---AAQFDEVVVAILVNPAKTGMF--DLDERIAMVK 75 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 + + ++ G D K I Sbjct: 76 ESTTHLP------NLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA 129 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSH 176 + ++++SS +AK E A L +S Sbjct: 130 GVDTFFVATAPR--YSFVSSSLAK--EVAMLGGDVSE 162 >1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Length = 169 Score = 53.0 bits (126), Expect = 5e-08 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 I + G+F+P +GH++I + +Q++ + + + S+E+R Sbjct: 2 ASIAVCPGSFDPVTYGHLDIIKRGAH--IFEQVYVCVLNNS---SKKPLFSVEER----- 51 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 + R T I ++ N + + + Q R++ Sbjct: 52 --CELLREVTKDIPNITVETSQGLLIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVL 109 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 + ++++SS + K E AR D S+S + Sbjct: 110 DESIETFFMMANNQYSFLSSSIVK--EVARYDGSVSEFV 146 >1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Length = 160 Score = 52.5 bits (125), Expect = 8e-08 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 13/159 (8%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 M + ++ G+F+P +GH+++ Q A + +++ + S + L S+ E+ Sbjct: 1 MHV-VYPGSFDPLTNGHLDVIQRASR--LFEKVTVAVLENPSKRGQYLFSAEERLA---- 53 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 R T + + V++ + + + Q H R + Sbjct: 54 ----IIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQL 109 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 + ++++SS M K E AR +S ++ Sbjct: 110 YPGLETLFILAATRYSFVSSTMVK--EIARYGGDVSKLV 146 >1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* Length = 158 Score = 50.2 bits (119), Expect = 4e-07 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 22/162 (13%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80 K ++ G F+P +GHI+I A + + L +P +LE+R++L+Q Sbjct: 2 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPS-----KKPMFTLEERVALAQQ 56 Query: 81 LIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMG----ADNIKSFHQWHHWK 136 + N + L V I G AD H + Sbjct: 57 ATAHLG----------NVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNR 106 Query: 137 RIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 ++ + + +++ISS + K E AR ++H L Sbjct: 107 HLMPELES-VFLMPSKEWSFISSSLVK--EVARHQGDVTHFL 145 >3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A biosynthetic pathway, coenzyme A biosynthesis, cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} Length = 168 Score = 50.0 bits (118), Expect = 4e-07 Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 14/159 (8%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 I + G+F+P +GH++I + + + + + + S E+ + Q Sbjct: 3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSK----KEGTFSLEERMDLIEQ 58 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 S+ P +++ F L + + ++V+ + + + + Sbjct: 59 SVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLY 118 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 +ISS + K E A +S + Sbjct: 119 MMSSTNYS--------FISSSIVK--EVAAYRADISEFV 147 >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352 Score = 47.9 bits (113), Expect = 2e-06 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 15/130 (11%) Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRI-- 75 P I +F G F P H GH+ IA++ ++ I + N S E+R Sbjct: 5 PMYDISVFIGRFQPFHKGHLHNIIIALQN--SKKVIINIGSCFNTPNIKNPFSFEQRKQM 62 Query: 76 ---SLSQSLIKNPRIRITAFEAYLNHTETFHTILQ-----VKKHNKSVNFV---WIMGAD 124 L + I + I Y + + L+ K+N S+ V + Sbjct: 63 IESDLQVAGIDLDTVVIEPLADYFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIKDSSSY 122 Query: 125 NIKSFHQWHH 134 I+SF +W + Sbjct: 123 YIRSFPEWDY 132 >1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural genomics, JCSG, protein structure initiative, PSI; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Length = 173 Score = 46.8 bits (110), Expect = 3e-06 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 MK ++ G+F+P GH++I + A+ D+L ++T K +LE+R L + Sbjct: 13 MK-AVYPGSFDPITLGHVDIIKRALS--IFDELVVLVTENPRKKCMF---TLEERKKLIE 66 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 ++ + L ++V + + + + Sbjct: 67 EVLSDLDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANK--KLYSDLE 124 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSH 176 T + F++ISS + K E A ++ Sbjct: 125 T-----VFLIASEKFSFISSSLVK--EVALYGGDVTE 154 >3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148 Score = 44.2 bits (103), Expect = 3e-05 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 7/140 (5%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 MK+ L GG F P H GH ++ +AIK D + + + R + Sbjct: 1 MKVAL-GGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRA---E 56 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 ++ + + + T + L V V+ A I + ++I Sbjct: 57 NVKRYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPETYEMALKINQKREELGKRKIT 116 Query: 140 TTVPIAIIDRFDVTFNYISS 159 + + ISS Sbjct: 117 I---VKVDWMMAEDGKPISS 133 >1tfu_A Phosphopantetheine adenylyltransferase; transport protein, structural genomics, PSI, protein structure initiative; 1.99A {Mycobacterium tuberculosis} SCOP: c.26.1.3 Length = 157 Score = 43.8 bits (102), Expect = 3e-05 Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 15/159 (9%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79 M + G+F+P GH++I + A + + + ++ P + + Sbjct: 1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDL-----------DE 49 Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIV 139 + + ++ G D K I Sbjct: 50 RIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA 109 Query: 140 TTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL 178 ++++SS +AK E A L +S +L Sbjct: 110 GVDT--FFVATAPRYSFVSSSLAK--EVAMLGGDVSELL 144 >3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236 Score = 31.6 bits (71), Expect = 0.16 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%) Query: 6 SLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY 65 ++++ R E +++ G F+ H GH A L + N+ Sbjct: 63 TMEEACRGTPCERPVRV-YADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNF 121 >3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143 Score = 30.4 bits (67), Expect = 0.31 Identities = 9/42 (21%), Positives = 15/42 (35%) Query: 19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60 GM + G F+ H GHI + + K + + Sbjct: 1 GMIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTA 42 >1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A* Length = 355 Score = 30.3 bits (67), Expect = 0.34 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 8/41 (19%) Query: 20 MKIGLFGGNFNPPHHGH-------IEIAQIAIKKLNLDQLW 53 MK G F + PP + + + + + D +W Sbjct: 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKAS-EGCGFDTVW 40 >2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132 Score = 29.8 bits (66), Expect = 0.42 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLW 53 MK + G ++ H+GHIE+ + A + + + Sbjct: 1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVA 34 >1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129 Score = 29.8 bits (66), Expect = 0.49 Identities = 9/26 (34%), Positives = 15/26 (57%) Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIK 45 MK + G F+ H GHI++ + A + Sbjct: 1 MKKVITYGTFDLLHWGHIKLLERAKQ 26 >3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341 Score = 29.5 bits (66), Expect = 0.58 Identities = 12/65 (18%), Positives = 25/65 (38%) Query: 1 MQQSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60 +Q SQ + + +PG + G F+ H GH++ + + + + Sbjct: 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQ 238 Query: 61 SVKNY 65 V +Y Sbjct: 239 EVNHY 243 Score = 25.7 bits (56), Expect = 9.5 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 27 GNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNY 65 G ++ H+GH + A + + D L + + + Sbjct: 14 GCYDMVHYGHSNQLRQA-RAMG-DYLIVGVHTDEEIAKH 50 >2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing factor, RAS-specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Score = 28.8 bits (64), Expect = 1.0 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 15/122 (12%) Query: 89 ITAFEAYLNHTETF--HTILQVKKHNKSVNFV--WIMGADNIKSFHQWHHWKRIVTTVPI 144 I + NH F I++ + + + + W+ AD + H ++ I +++ Sbjct: 46 IMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINR 105 Query: 145 AIIDRFDVTFNYISSPMAKTFE-----------YARLDESLSHILCTTSPPSWLFIHDRH 193 + I R T+ +S + + L ESL + P +++ D Sbjct: 106 SAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLV 165 Query: 194 HI 195 I Sbjct: 166 FI 167 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.4 bits (63), Expect = 1.4 Identities = 44/247 (17%), Positives = 78/247 (31%), Gaps = 104/247 (42%) Query: 24 LFGG--NFN-------------PPHHGHIE--IAQIAIKKLN----------------LD 50 +FGG N + + I A + L+ L+ Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVL---VGDLIKFSA-ETLSELIRTTLDAEKVFTQGLN 214 Query: 51 QLWWIITPFNSV--KNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTIL-- 106 L W+ P ++ K+Y LS IS P I + Y T +L Sbjct: 215 ILEWLENP-SNTPDKDYLLSIP----ISC-------PLIGVIQLAHY---VVTAK-LLGF 258 Query: 107 ---QVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAK 163 +++ + G H + +VT V IA D ++ +F ++S A Sbjct: 259 TPGELRSY-----LKGATG-----------HSQGLVTAVAIAETDSWE-SF-FVSVRKAI 300 Query: 164 T--FE--------YAR-------LDESLSHILCTTSPPSW-LFIHDRHHIISSTAIRKKI 205 T F Y L++SL + PS L I + ++ + + Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLEN---NEGVPSPMLSISN----LTQEQV-QDY 352 Query: 206 IEQDNTR 212 + + N+ Sbjct: 353 VNKTNSH 359 Score = 27.6 bits (61), Expect = 2.3 Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 87/218 (39%) Query: 33 HHGHIEIAQIAIKK---LNLDQLWWIITPF---------NSVKNYNLSSSLE-------- 72 HG +E + + QL F + ++ E Sbjct: 12 SHGSLEHV-LLVPTASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67 Query: 73 -------KRISLSQSLIKNPRIRITAFE-AYLNHTETFHTIL----------QVKKHNKS 114 ++ ++ + +T FE YL + H + VK K Sbjct: 68 VSSLVEPSKVGQFDQVLN---LCLTEFENCYLEGND-IHALAAKLLQENDTTLVKT--KE 121 Query: 115 VNFVWIMGADNIKSFHQWHHW--KRIVTTVPIAIIDRFDVTFNYISSPMAKTF------- 165 + IK++ + A+ F + A+ Sbjct: 122 L----------IKNYITARIMAKRPFDKKSNSAL-------FRAVGEGNAQLVAIFGGQG 164 Query: 166 ---EYARLDESLSHILCTTSPPSWLFIHDRHHIISSTA 200 +Y +E L + T + D +I +A Sbjct: 165 NTDDY--FEE-LRDLYQTYHV----LVGD---LIKFSA 192 >2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway, oxidoreductase; 2.00A {Pseudomonas putida} Length = 378 Score = 27.9 bits (61), Expect = 1.9 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 8/41 (19%) Query: 20 MKIGLFGGNFNPPHHGH-------IEIAQIAIKKLNLDQLW 53 M+ GL + P I+ A A + +D + Sbjct: 3 METGLIFHPYMRPGRSARQTFDWGIKSAVQA-DSVGIDSMM 42 >2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 Score = 27.5 bits (61), Expect = 2.4 Identities = 7/52 (13%), Positives = 20/52 (38%) Query: 38 EIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89 + + + ++ + LS RISL++++ K+ + + Sbjct: 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 153 >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Score = 27.4 bits (60), Expect = 2.7 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 88 RITAFEAYLNHTETF--HTILQVKKHNKSVNFV--WIMGADNIKSFHQWHHWKRIVTTVP 143 + F N + + + + +K V + +I A + K + + + IV + Sbjct: 495 NLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLS 554 Query: 144 IAIIDRFDVTFNYISSPMAKTFEY 167 + R +T+ + S K + Sbjct: 555 NVAVSRLALTWEKLPSKFKKFYAE 578 >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316 Score = 27.4 bits (60), Expect = 2.9 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 7/74 (9%) Query: 31 PPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS------LSQSLIKN 84 PP G + ++ Y IS +S+ L+++ Sbjct: 224 PPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRD 283 Query: 85 PRIRITAFEAYLNH 98 + R++A + L H Sbjct: 284 AKQRLSAAQV-LQH 296 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3fbv_A* Length = 434 Score = 27.3 bits (60), Expect = 3.0 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 31 PPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRIT 90 P + + I +LD++ + + +L +SQ + +P R T Sbjct: 239 PFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDL---------ISQMIDHDPLKRPT 289 Query: 91 AFEAYLNH 98 A + L H Sbjct: 290 AMKV-LRH 296 >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 Score = 27.2 bits (60), Expect = 3.3 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 38 EIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRIT--AFEAY 95 + Q +L+ L K NLS ++R+SL++++ N I + A Sbjct: 99 SVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158 Query: 96 LNHTE 100 H Sbjct: 159 DAHVG 163 >1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A 3fgc_B* Length = 324 Score = 27.1 bits (59), Expect = 3.5 Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 8/41 (19%) Query: 20 MKIGLFGGNFNPPHHGH-------IEIAQIAIKKLNLDQLW 53 MK GLF NF ++ A +L D L Sbjct: 1 MKFGLFFLNFMNSKRSSDQVIEEMLDTAHYV-DQLKFDTLA 40 >1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} SCOP: e.28.1.2 Length = 1019 Score = 26.9 bits (59), Expect = 4.0 Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 121 MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT 180 +G + FH +K I V + + + DV + S + +F R D L + Sbjct: 686 LGRNPADIFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQ 745 Query: 181 TSPPSWLFIHDR 192 P + I + Sbjct: 746 RLPNLYSVIMTQ 757 >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor; HET: BK3; 1.98A {Cryptosporidium parvum iowa II} PDB: 3igo_A* 3ncg_A* Length = 486 Score = 26.8 bits (59), Expect = 4.4 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 48 NLDQLWWIIT---PFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNH 98 D L + T F+ + +S K + + + L +P +RITA + L H Sbjct: 227 EYDILKRVETGKYAFDLPQWRTISDDA-KDL-IRKMLTFHPSLRITATQC-LEH 277 >1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 2etf_A 1z0h_A 2nm1_A 3g94_A 1f82_A Length = 1290 Score = 26.4 bits (58), Expect = 4.5 Identities = 9/73 (12%), Positives = 27/73 (36%) Query: 62 VKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIM 121 ++ + + ++ I N + ++ + T++ + KSV F + + Sbjct: 931 IRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNI 990 Query: 122 GADNIKSFHQWHH 134 D + ++W Sbjct: 991 REDISEYINRWFF 1003 >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* Length = 351 Score = 26.5 bits (58), Expect = 4.7 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 20/87 (22%) Query: 31 PPHHGHIEIAQIA-IKKLNLD---QLWWIITPFNSVKNYNLSSSLEKRIS---------- 76 P G+ E Q+A I +L ++W + + + L ++++ Sbjct: 227 PIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDP 286 Query: 77 -----LSQSLIKNPRIRITAFEAYLNH 98 + + L+ +P RI + +A LNH Sbjct: 287 YALDLIDKLLVLDPAQRIDSDDA-LNH 312 >3elj_A Mitogen-activated protein kinase 8; C-JUN N-terminal kinase, alternative splicing, ATP-binding, nucleotide- binding, phosphoprotein, polymorphism; HET: GS7; 1.80A {Homo sapiens} PDB: 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 1ukh_A 1uki_A* 2zdt_A* 2o2u_A* 2waj_A* 2o0u_A* 2zdu_A* 3da6_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* ... Length = 369 Score = 26.4 bits (57), Expect = 4.9 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 3/96 (3%) Query: 3 QSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV 62 + D + G F P ++E ++ P +S Sbjct: 231 PGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSE 290 Query: 63 KNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNH 98 N +S R LS+ L+ + RI+ EA L H Sbjct: 291 HNKLKASQA--RDLLSKMLVIDASKRISVDEA-LQH 323 >1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Length = 396 Score = 26.2 bits (57), Expect = 6.1 Identities = 8/24 (33%), Positives = 15/24 (62%) Query: 30 NPPHHGHIEIAQIAIKKLNLDQLW 53 NP H H E+ ++A++ L+ D + Sbjct: 202 NPMHRAHEELCRMAMESLDADGVV 225 >2vx3_A Dual specificity tyrosine-phosphorylation- regulated kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, ATP-binding; HET: PTR D15 P2K; 2.40A {Homo sapiens} PDB: 2wo6_A* Length = 382 Score = 26.1 bits (56), Expect = 6.5 Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%) Query: 77 LSQSLIKNPRIRITAFEAYLNH 98 + + L +P+ RI + A L H Sbjct: 353 ILRMLDYDPKTRIQPYYA-LQH 373 >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} Length = 432 Score = 25.8 bits (56), Expect = 6.8 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%) Query: 77 LSQSLIKNPRIRITAFEAYLNH 98 L L NP RIT +A L+H Sbjct: 342 LESMLKFNPNKRITIDQA-LDH 362 >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360 Score = 26.0 bits (56), Expect = 6.9 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQS 80 +I G + + + + N + W N +++L + E LS Sbjct: 243 EIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPW----SNVFSDHSLKDAKEAYDLLSAL 298 Query: 81 LIKNPRIRITAFEAYLNH 98 L P R+ +EA L H Sbjct: 299 LQYLPEERMKPYEA-LCH 315 >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8} Length = 359 Score = 26.0 bits (57), Expect = 7.0 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 6/106 (5%) Query: 18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISL 77 P M + N P K++ +I K LS ++R++L Sbjct: 88 PHMTVF---ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVAL 144 Query: 78 SQSLIKNPRIRITAFEAY--LNHTETFHTILQVKKHNKSVNFVWIM 121 +++L+K P++ + E L+ ++K + + + Sbjct: 145 ARALVKQPKV-LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189 >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360 Score = 26.1 bits (57), Expect = 7.0 Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%) Query: 77 LSQSLIKNPRIRITAFEAYLNH 98 L L +P +R + E L H Sbjct: 336 LYSILQIDPTLRPSPAEL-LKH 356 >3kxj_A Casein kinase II subunit alpha; protein kinase CK2-inhibitor complex, ATP-binding, nucleotide-binding, serine/threonine-protein kinase; HET: K68; 1.50A {Zea mays} PDB: 1day_A* 1daw_A* 1m2q_A* 3kxg_A* 3kxh_A* 1m2r_A* 3kxm_A* 3kxn_A* 1om1_A* 1ds5_A* 1f0q_A* 1j91_A 1jam_A* 1lpu_A 1lr4_A 1lp4_A* 1zoe_A* 1zog_A* 1zoh_A* 2oxd_A* ... Length = 327 Score = 25.7 bits (56), Expect = 7.6 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 77 LSQSLIKNPRIRITAFEAYLNH 98 L + L + + R+TA EA + H Sbjct: 295 LDKLLRYDHQERLTALEA-MTH 315 >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation- regulated kinase 2; KI-(Y)-phosphorylation regulated kinase 2, PSK-H2; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429 Score = 25.9 bits (56), Expect = 7.8 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 77 LSQSLIKNPRIRITAFEAYLNH 98 L Q L +P +R+T +A L H Sbjct: 389 LKQCLEWDPAVRMTPGQA-LRH 409 >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630 Score = 25.7 bits (56), Expect = 7.9 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%) Query: 12 RMPKVEPGMKIGLFGGNF-------NPPHHGHIEIAQIAIKKLN 48 R+ E K + NP H+GH + Q K+L Sbjct: 397 RLTPTELKQKFKDMNADAVSAFQLRNPVHNGHALLMQDTHKQLL 440 >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 1q5k_A* 3i4b_A* 1r0e_A* 1gng_A* 2o5k_A* 2ow3_A* 3f7z_A* 1h8f_A* 3f88_A* 1uv5_A* 1o9u_A* Length = 420 Score = 25.6 bits (55), Expect = 8.8 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 17/84 (20%) Query: 31 PPHHGHIEIAQ----IAIKKLNLDQLWWIITP------FNSVKNYNLSSSLEKRIS---- 76 P G + Q I + + + P F +K + + R Sbjct: 255 PIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAI 314 Query: 77 --LSQSLIKNPRIRITAFEAYLNH 98 S+ L P R+T EA H Sbjct: 315 ALCSRLLEYTPTARLTPLEA-CAH 337 >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546 Score = 25.7 bits (56), Expect = 8.9 Identities = 9/69 (13%), Positives = 24/69 (34%) Query: 30 NPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRI 89 NP H H E+ + A++K+ L + + ++ + + L + + + Sbjct: 173 NPMHRVHEELTKRAMEKVGGGLLLHPVVGLTKPGDVDVYTRMRIYKVLYEKYYDKKKTIL 232 Query: 90 TAFEAYLNH 98 + Sbjct: 233 AFLPLAMRM 241 >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyrosine picked threonine kinase, SGC, structural genomics consortium, ATP-binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* Length = 313 Score = 25.3 bits (55), Expect = 9.4 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 48 NLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNH 98 + +L II P + ++ ++ + + L L ++P+ RI+ E L H Sbjct: 245 QISKLHAIIDPNHEIEFPDIPEKDLQDV-LKCCLKRDPKQRISIPEL-LAH 293 >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Staphylococcus aureus subsp} PDB: 2qkr_A* Length = 311 Score = 25.6 bits (56), Expect = 9.5 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%) Query: 77 LSQSLIKNPRIRITAFEAYLNH 98 LS L +P RI+A +A +NH Sbjct: 281 LSNMLCFDPNKRISARDA-MNH 301 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.135 0.419 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,988,458 Number of extensions: 89215 Number of successful extensions: 488 Number of sequences better than 10.0: 1 Number of HSP's gapped: 473 Number of HSP's successfully gapped: 129 Length of query: 216 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 127 Effective length of database: 3,535,514 Effective search space: 449010278 Effective search space used: 449010278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.1 bits)