BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score =  445 bits (1145), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MQQSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60
           MQQSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN
Sbjct: 1   MQQSQSLQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFN 60

Query: 61  SVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWI 120
           SVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWI
Sbjct: 61  SVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWI 120

Query: 121 MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT 180
           MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT
Sbjct: 121 MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCT 180

Query: 181 TSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLGI 216
           TSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLGI
Sbjct: 181 TSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLGI 216


>gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 182

 Score = 30.0 bits (66), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
          M+  ++ G+F+P  +GH++   I I+ L+  +   I    NSVK     S  E+   + Q
Sbjct: 2  MRKAVYTGSFDPITNGHMD---IIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQ 58

Query: 80 SLI-----KNPRIRITAFEA 94
          S+       + R+ + +FE 
Sbjct: 59 SIFHFIPDSSNRVSVISFEG 78


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 25.8 bits (55), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 95  YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKR 137
           +LN+ ++F  +L+ K H   +  ++  G      F Q   WK+
Sbjct: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQ 265


>gi|254780156|ref|YP_003064569.1| putative inositol-1-monophosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 256

 Score = 24.3 bits (51), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 54  WIITPFNSVKN-------YNLSSSLEKRISLSQSLIKNP 85
           WI+ P N + N       + +S +LE+   +  S+I NP
Sbjct: 82  WIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNP 120


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 23.5 bits (49), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 63  KNYNLSSSLEKRISLSQSLIKNPRIRI 89
           +   LS   ++R+S++++++KNP I I
Sbjct: 490 RGLKLSGGEKQRVSIARAILKNPPIII 516


>gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 185

 Score = 23.1 bits (48), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 1  MQQSQSLQDIMRMPKVE 17
          MQQ  S +++M++PK+E
Sbjct: 22 MQQEFSYKNVMQIPKIE 38


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,599
Number of Sequences: 1233
Number of extensions: 5338
Number of successful extensions: 21
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 8
length of query: 216
length of database: 328,796
effective HSP length: 70
effective length of query: 146
effective length of database: 242,486
effective search space: 35402956
effective search space used: 35402956
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 36 (18.5 bits)