Query gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 170 No_of_seqs 77 out of 79 Neff 4.2 Searched_HMMs 33803 Date Wed Jun 1 14:51:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780650.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ctw_B RCDA; protein binding; 100.0 0 0 425.8 7.8 160 5-169 10-169 (169) 2 >1j1d_C Troponin I, TNI; THIN 85.1 0.52 1.5E-05 25.6 2.1 66 73-144 19-84 (133) 3 >1ytz_I Troponin I; muscle, TH 68.1 8.5 0.00025 18.6 5.0 66 70-142 14-79 (182) 4 >1qht_A Protein (DNA polymeras 57.1 8.1 0.00024 18.7 2.5 19 70-88 21-39 (39) 5 >1j1d_B Troponin T, TNT; THIN 36.3 5.2 0.00015 19.8 -1.1 64 76-144 5-68 (106) 6 >1ytz_T Troponin T; muscle, TH 32.9 22 0.00065 16.2 1.6 61 77-144 8-68 (107) 7 >2akf_A Coronin-1A; coiled coi 28.1 41 0.0012 14.7 3.7 27 115-141 3-29 (32) 8 >2pnv_A Small conductance calc 26.9 43 0.0013 14.5 3.3 24 118-141 9-32 (43) 9 >1eg7_A Formyltetrahydrofolate 21.1 56 0.0017 13.9 3.2 40 128-170 6-46 (98) 10 >2kfd_A PRE-mRNA-processing pr 18.8 36 0.0011 15.0 0.5 19 74-92 17-36 (69) No 1 >>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus} (B:) Probab=100.00 E-value=0 Score=425.76 Aligned_cols=160 Identities=34% Similarity=0.476 Sum_probs=150.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 43379999998525999999999999999999985389831231169999999999999999999999999999999763 Q gi|254780650|r 5 VSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALED 84 (170) Q Consensus 5 ~~~~~~~~~r~~~s~~F~~Ly~EgM~LveEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTRLMQiaSWLLlqRAv~e 84 (170) ..++|+|++|+++|.+|++||+|||+||||||+||||+||.++|.|++.++++||||||||||||||||||||+||||++ T Consensus 10 ~~~~~~~~~~~~~s~~F~~Ly~EgM~LveEtaaYlDg~Gr~~ak~L~r~~~l~yA~ESMrlTTRLMQiaSWLL~qRAv~e 89 (169) T 3ctw_B 10 TPWRAGVIQDFARSELFDRTFEEGMQLVEETAAYLDGAGRHDSKVLSRNAALGYATESMRLTTRLMQVASWLLVQRAVRE 89 (169) T ss_dssp -------CCCCCCCTTHHHHHHHHHHHHHHHHHHHTTHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 42588898872205889999999999999999997489805442058999999999999999999999999999999984 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 89998997423442254557876458515422389999999999999999999998324662103658894799999999 Q gi|254780650|r 85 GNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLE 164 (170) Q Consensus 85 GEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~ 164 (170) ||||++|+++||+||+++.+ ..+|+|++||+.||+||+||++||+||+|||++||.+.+. .+++|||++||++|+ T Consensus 90 GEMs~~qa~~ek~rl~~~~~---~~~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~~~~--~~~~nPv~~ql~~L~ 164 (169) T 3ctw_B 90 GEMPPEAACAEAYRLAEEAP---ADGPAVEELPFGLMNLLQRSERLYERVRHLDRRMYVESPN--EEAPRPVQNQLDRLT 164 (169) T ss_dssp TSSCTTTTSSSCC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC------------------- T ss_pred CCCCHHHHHHHHCCCCCCCC---CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHH T ss_conf 89898888536415688889---9850154476999999999999999999999984157765--779997999999999 Q ss_pred HHHHC Q ss_conf 98522 Q gi|254780650|r 165 ACFEN 169 (170) Q Consensus 165 ~AF~~ 169 (170) +||++ T Consensus 165 ~AF~~ 169 (169) T 3ctw_B 165 AAFGG 169 (169) T ss_dssp ----- T ss_pred HHHCC T ss_conf 97585 No 2 >>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (C:) Probab=85.09 E-value=0.52 Score=25.56 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999999763899989974234422545578764585154223899999999999999999999983246 Q gi|254780650|r 73 VSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA 144 (170) Q Consensus 73 aSWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~ 144 (170) ..=+|+|+|-.+.+.+.++...||-++ +..-|.|.+.++.. +..|+ +-...||++|..||.+-|-- T Consensus 19 lk~~ll~~A~~el~~e~e~~~~eK~~~-Laer~~pl~i~~l~--~~~L~---e~~keLh~~I~~lE~EkYDl 84 (133) T 1j1d_C 19 LKTLLLQIAKQELEREAEERRGEKGRA-LSTRAQPLELAGLG--FAELQ---DLARQLHARVDKVDEERYDI 84 (133) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCCTTCC--HHHHH---HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCC--HHHHH---HHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999-99608999999989--99999---99999999999999999779 No 3 >>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} (I:) Probab=68.14 E-value=8.5 Score=18.59 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=43.6 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999997638999899742344225455787645851542238999999999999999999999832 Q gi|254780650|r 70 MQMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIY 142 (170) Q Consensus 70 MQiaSWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~ 142 (170) .+-..=||+|.|-.+++...++-..||.++ +..-|.+.+.++ ....|-+-...||++|.-||..-| T Consensus 14 k~~lk~lllqkAk~el~~eke~~~~eK~k~-L~er~~pl~~~~------~~~~L~e~~keL~~~I~~lEeEKY 79 (182) T 1ytz_I 14 RQHLKSAMLQLAVTEIEKEAAAKEVEKQNY-LAEHSPPLSLPG------SMQELQELSKKLHAKIDSVDEERY 79 (182) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCCCCC------SHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998999999999999999999999999999-997389999997------799999999999999999999995 No 4 >>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:330-368) Probab=57.08 E-value=8.1 Score=18.71 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999997638999 Q gi|254780650|r 70 MQMVSWLFLQRALEDGNMT 88 (170) Q Consensus 70 MQiaSWLLlqRAv~eGEMs 88 (170) -|+.-|||+.+|...+|+. T Consensus 21 gq~VE~lL~k~A~~~nela 39 (39) T 1qht_A 21 GNLVEWFLLRKAYKRNELA 39 (39) T ss_dssp HHHHHHHHHHHHHHTTBCC T ss_pred EEEEEEHHHHHHHHCCCCC T ss_conf 2787606689886458667 No 5 >>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (B:) Probab=36.33 E-value=5.2 Score=19.82 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=36.3 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999763899989974234422545578764585154223899999999999999999999983246 Q gi|254780650|r 76 LFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA 144 (170) Q Consensus 76 LLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~ 144 (170) |+++.|-.+-.-...|-..|+-+.-+..-|.+.+.++.+ +. .|-+-...||++|..||.+-|-- T Consensus 5 l~l~~A~~el~~e~~~~~~E~K~~~laer~ppl~i~~ls--~~---~L~e~~keLh~~I~~leeEkYDl 68 (106) T 1j1d_B 5 YIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLN--ED---QLREKAKELWQTIYNLEAEKFDL 68 (106) T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHTTCC--HH---HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999998888899999999999999817999999999--99---99999999999999999999459 No 6 >>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} (T:) Probab=32.89 E-value=22 Score=16.22 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=37.6 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999763899989974234422545578764585154223899999999999999999999983246 Q gi|254780650|r 77 FLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA 144 (170) Q Consensus 77 LlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~ 144 (170) ++|+|..+.. ..++...+|.++ +..-|.+.+.++.. +..|+++ ...||++|.-+|.+-|-- T Consensus 8 ~L~ka~~~~~-kke~ereeK~~~-Laer~ppL~i~~l~--~~~L~e~---~keLh~kI~~leeEkYDl 68 (107) T 1ytz_T 8 YLAKADQKRG-KKQTARETKKKV-LAERRKPLNIDHLN--EDKLRDK---AKELWDWLYQLQTEKYDF 68 (107) T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH-HHHTCCCCCCSSSC--SSHHHHH---HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-HHHHCCCCCCCCCC--HHHHHHH---HHHHHHHHHHHHHHHHHH T ss_conf 9999999986-689999999999-99837999999999--9999999---999999999999998359 No 7 >>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} (A:) Probab=28.14 E-value=41 Score=14.66 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=22.5 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 223899999999999999999999983 Q gi|254780650|r 115 ELPCFFKNLVERSSQLQRRIVLLDQEI 141 (170) Q Consensus 115 ~LP~~lr~Li~rS~~L~~RV~rLD~~~ 141 (170) -|.+.+|.|-+--..||.|+-||+..+ T Consensus 3 rleee~r~l~a~vq~lq~rldrleetv 29 (32) T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 688999999999999999999999877 No 8 >>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} (A:) Probab=26.95 E-value=43 Score=14.53 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999999983 Q gi|254780650|r 118 CFFKNLVERSSQLQRRIVLLDQEI 141 (170) Q Consensus 118 ~~lr~Li~rS~~L~~RV~rLD~~~ 141 (170) +-.-+|-+||+.|..||.-|+..+ T Consensus 9 dlvSeL~~rsEdlEkri~~LE~kl 32 (43) T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKL 32 (43) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987589999999999999 No 9 >>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:438-535) Probab=21.09 E-value=56 Score=13.86 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=30.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HHCC Q ss_conf 999999999999832466210365889479999999998-5229 Q gi|254780650|r 128 SQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEAC-FENF 170 (170) Q Consensus 128 ~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~~A-F~~~ 170 (170) ..+.++|..+=+.||++....... .+..|+.+++.. |+|| T Consensus 6 ~~i~eKIe~IA~~IYGA~~V~~s~---~A~kqL~~~e~~G~~~l 46 (98) T 1eg7_A 6 LSIKDKIAKIATEIYGADGVNYTA---EADKAIQRYESLGYGNL 46 (98) T ss_dssp SCHHHHHHHHHHHTTCCSEEEECH---HHHHHHHHHHHTTCTTS T ss_pred CCHHHHHHHHHHHHCCCCCEEECH---HHHHHHHHHHHCCCCCC T ss_conf 889999999999824998545789---99999999997799888 No 10 >>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} (A:) Probab=18.81 E-value=36 Score=14.99 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.0 Q ss_pred HHHHHHHHHH-CCCCCHHHH Q ss_conf 9999999976-389998997 Q gi|254780650|r 74 SWLFLQRALE-DGNMTLEQV 92 (170) Q Consensus 74 SWLLlqRAv~-eGEMs~~qa 92 (170) =|||+||-+. .|-|.++-. T Consensus 17 F~LlL~Rvy~~~~~~kPetW 36 (69) T 2kfd_A 17 FWLLLQRTYTKTGKPKPSTW 36 (69) T ss_dssp HHHHHHHHSCSSSSCCCSSH T ss_pred HHHHHHHHHCCCCCCCCHHH T ss_conf 99999999825899994259 Done!