Query         gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs    77 out of 79
Neff          4.2 
Searched_HMMs 33803
Date          Wed Jun  1 14:51:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780650.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ctw_B RCDA; protein binding; 100.0       0       0  425.8   7.8  160    5-169    10-169 (169)
  2 >1j1d_C Troponin I, TNI; THIN   85.1    0.52 1.5E-05   25.6   2.1   66   73-144    19-84  (133)
  3 >1ytz_I Troponin I; muscle, TH  68.1     8.5 0.00025   18.6   5.0   66   70-142    14-79  (182)
  4 >1qht_A Protein (DNA polymeras  57.1     8.1 0.00024   18.7   2.5   19   70-88     21-39  (39)
  5 >1j1d_B Troponin T, TNT; THIN   36.3     5.2 0.00015   19.8  -1.1   64   76-144     5-68  (106)
  6 >1ytz_T Troponin T; muscle, TH  32.9      22 0.00065   16.2   1.6   61   77-144     8-68  (107)
  7 >2akf_A Coronin-1A; coiled coi  28.1      41  0.0012   14.7   3.7   27  115-141     3-29  (32)
  8 >2pnv_A Small conductance calc  26.9      43  0.0013   14.5   3.3   24  118-141     9-32  (43)
  9 >1eg7_A Formyltetrahydrofolate  21.1      56  0.0017   13.9   3.2   40  128-170     6-46  (98)
 10 >2kfd_A PRE-mRNA-processing pr  18.8      36  0.0011   15.0   0.5   19   74-92     17-36  (69)

No 1  
>>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus} (B:)
Probab=100.00  E-value=0  Score=425.76  Aligned_cols=160  Identities=34%  Similarity=0.476  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             43379999998525999999999999999999985389831231169999999999999999999999999999999763
Q gi|254780650|r    5 VSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALED   84 (170)
Q Consensus         5 ~~~~~~~~~r~~~s~~F~~Ly~EgM~LveEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTRLMQiaSWLLlqRAv~e   84 (170)
                      ..++|+|++|+++|.+|++||+|||+||||||+||||+||.++|.|++.++++||||||||||||||||||||+||||++
T Consensus        10 ~~~~~~~~~~~~~s~~F~~Ly~EgM~LveEtaaYlDg~Gr~~ak~L~r~~~l~yA~ESMrlTTRLMQiaSWLL~qRAv~e   89 (169)
T 3ctw_B           10 TPWRAGVIQDFARSELFDRTFEEGMQLVEETAAYLDGAGRHDSKVLSRNAALGYATESMRLTTRLMQVASWLLVQRAVRE   89 (169)
T ss_dssp             -------CCCCCCCTTHHHHHHHHHHHHHHHHHHHTTHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             42588898872205889999999999999999997489805442058999999999999999999999999999999984


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             89998997423442254557876458515422389999999999999999999998324662103658894799999999
Q gi|254780650|r   85 GNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLE  164 (170)
Q Consensus        85 GEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~  164 (170)
                      ||||++|+++||+||+++.+   ..+|+|++||+.||+||+||++||+||+|||++||.+.+.  .+++|||++||++|+
T Consensus        90 GEMs~~qa~~ek~rl~~~~~---~~~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~~~~--~~~~nPv~~ql~~L~  164 (169)
T 3ctw_B           90 GEMPPEAACAEAYRLAEEAP---ADGPAVEELPFGLMNLLQRSERLYERVRHLDRRMYVESPN--EEAPRPVQNQLDRLT  164 (169)
T ss_dssp             TSSCTTTTSSSCC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred             CCCCHHHHHHHHCCCCCCCC---CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHH
T ss_conf             89898888536415688889---9850154476999999999999999999999984157765--779997999999999


Q ss_pred             HHHHC
Q ss_conf             98522
Q gi|254780650|r  165 ACFEN  169 (170)
Q Consensus       165 ~AF~~  169 (170)
                      +||++
T Consensus       165 ~AF~~  169 (169)
T 3ctw_B          165 AAFGG  169 (169)
T ss_dssp             -----
T ss_pred             HHHCC
T ss_conf             97585


No 2  
>>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (C:)
Probab=85.09  E-value=0.52  Score=25.56  Aligned_cols=66  Identities=21%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999763899989974234422545578764585154223899999999999999999999983246
Q gi|254780650|r   73 VSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA  144 (170)
Q Consensus        73 aSWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~  144 (170)
                      ..=+|+|+|-.+.+.+.++...||-++ +..-|.|.+.++..  +..|+   +-...||++|..||.+-|--
T Consensus        19 lk~~ll~~A~~el~~e~e~~~~eK~~~-Laer~~pl~i~~l~--~~~L~---e~~keLh~~I~~lE~EkYDl   84 (133)
T 1j1d_C           19 LKTLLLQIAKQELEREAEERRGEKGRA-LSTRAQPLELAGLG--FAELQ---DLARQLHARVDKVDEERYDI   84 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCCTTCC--HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCC--HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999-99608999999989--99999---99999999999999999779


No 3  
>>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} (I:)
Probab=68.14  E-value=8.5  Score=18.59  Aligned_cols=66  Identities=24%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999997638999899742344225455787645851542238999999999999999999999832
Q gi|254780650|r   70 MQMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIY  142 (170)
Q Consensus        70 MQiaSWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~  142 (170)
                      .+-..=||+|.|-.+++...++-..||.++ +..-|.+.+.++      ....|-+-...||++|.-||..-|
T Consensus        14 k~~lk~lllqkAk~el~~eke~~~~eK~k~-L~er~~pl~~~~------~~~~L~e~~keL~~~I~~lEeEKY   79 (182)
T 1ytz_I           14 RQHLKSAMLQLAVTEIEKEAAAKEVEKQNY-LAEHSPPLSLPG------SMQELQELSKKLHAKIDSVDEERY   79 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCCCCC------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998999999999999999999999999999-997389999997------799999999999999999999995


No 4  
>>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:330-368)
Probab=57.08  E-value=8.1  Score=18.71  Aligned_cols=19  Identities=21%  Similarity=0.667  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999999997638999
Q gi|254780650|r   70 MQMVSWLFLQRALEDGNMT   88 (170)
Q Consensus        70 MQiaSWLLlqRAv~eGEMs   88 (170)
                      -|+.-|||+.+|...+|+.
T Consensus        21 gq~VE~lL~k~A~~~nela   39 (39)
T 1qht_A           21 GNLVEWFLLRKAYKRNELA   39 (39)
T ss_dssp             HHHHHHHHHHHHHHTTBCC
T ss_pred             EEEEEEHHHHHHHHCCCCC
T ss_conf             2787606689886458667


No 5  
>>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} (B:)
Probab=36.33  E-value=5.2  Score=19.82  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=36.3

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999763899989974234422545578764585154223899999999999999999999983246
Q gi|254780650|r   76 LFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA  144 (170)
Q Consensus        76 LLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~  144 (170)
                      |+++.|-.+-.-...|-..|+-+.-+..-|.+.+.++.+  +.   .|-+-...||++|..||.+-|--
T Consensus         5 l~l~~A~~el~~e~~~~~~E~K~~~laer~ppl~i~~ls--~~---~L~e~~keLh~~I~~leeEkYDl   68 (106)
T 1j1d_B            5 YIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLN--ED---QLREKAKELWQTIYNLEAEKFDL   68 (106)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHHHTTCC--HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998888899999999999999817999999999--99---99999999999999999999459


No 6  
>>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} (T:)
Probab=32.89  E-value=22  Score=16.22  Aligned_cols=61  Identities=13%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999763899989974234422545578764585154223899999999999999999999983246
Q gi|254780650|r   77 FLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA  144 (170)
Q Consensus        77 LlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~  144 (170)
                      ++|+|..+.. ..++...+|.++ +..-|.+.+.++..  +..|+++   ...||++|.-+|.+-|--
T Consensus         8 ~L~ka~~~~~-kke~ereeK~~~-Laer~ppL~i~~l~--~~~L~e~---~keLh~kI~~leeEkYDl   68 (107)
T 1ytz_T            8 YLAKADQKRG-KKQTARETKKKV-LAERRKPLNIDHLN--EDKLRDK---AKELWDWLYQLQTEKYDF   68 (107)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHH-HHHTCCCCCCSSSC--SSHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHH-HHHHCCCCCCCCCC--HHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf             9999999986-689999999999-99837999999999--9999999---999999999999998359


No 7  
>>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} (A:)
Probab=28.14  E-value=41  Score=14.66  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             223899999999999999999999983
Q gi|254780650|r  115 ELPCFFKNLVERSSQLQRRIVLLDQEI  141 (170)
Q Consensus       115 ~LP~~lr~Li~rS~~L~~RV~rLD~~~  141 (170)
                      -|.+.+|.|-+--..||.|+-||+..+
T Consensus         3 rleee~r~l~a~vq~lq~rldrleetv   29 (32)
T 2akf_A            3 RLEEDVRNLNAIVQKLQERLDRLEETV   29 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             688999999999999999999999877


No 8  
>>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} (A:)
Probab=26.95  E-value=43  Score=14.53  Aligned_cols=24  Identities=33%  Similarity=0.598  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999999983
Q gi|254780650|r  118 CFFKNLVERSSQLQRRIVLLDQEI  141 (170)
Q Consensus       118 ~~lr~Li~rS~~L~~RV~rLD~~~  141 (170)
                      +-.-+|-+||+.|..||.-|+..+
T Consensus         9 dlvSeL~~rsEdlEkri~~LE~kl   32 (43)
T 2pnv_A            9 DMISDLNERSEDFEKRIVTLETKL   32 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999987589999999999999


No 9  
>>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:438-535)
Probab=21.09  E-value=56  Score=13.86  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HHCC
Q ss_conf             999999999999832466210365889479999999998-5229
Q gi|254780650|r  128 SQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEAC-FENF  170 (170)
Q Consensus       128 ~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~~A-F~~~  170 (170)
                      ..+.++|..+=+.||++.......   .+..|+.+++.. |+||
T Consensus         6 ~~i~eKIe~IA~~IYGA~~V~~s~---~A~kqL~~~e~~G~~~l   46 (98)
T 1eg7_A            6 LSIKDKIAKIATEIYGADGVNYTA---EADKAIQRYESLGYGNL   46 (98)
T ss_dssp             SCHHHHHHHHHHHTTCCSEEEECH---HHHHHHHHHHHTTCTTS
T ss_pred             CCHHHHHHHHHHHHCCCCCEEECH---HHHHHHHHHHHCCCCCC
T ss_conf             889999999999824998545789---99999999997799888


No 10 
>>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=18.81  E-value=36  Score=14.99  Aligned_cols=19  Identities=32%  Similarity=0.522  Sum_probs=15.0

Q ss_pred             HHHHHHHHHH-CCCCCHHHH
Q ss_conf             9999999976-389998997
Q gi|254780650|r   74 SWLFLQRALE-DGNMTLEQV   92 (170)
Q Consensus        74 SWLLlqRAv~-eGEMs~~qa   92 (170)
                      =|||+||-+. .|-|.++-.
T Consensus        17 F~LlL~Rvy~~~~~~kPetW   36 (69)
T 2kfd_A           17 FWLLLQRTYTKTGKPKPSTW   36 (69)
T ss_dssp             HHHHHHHHSCSSSSCCCSSH
T ss_pred             HHHHHHHHHCCCCCCCCHHH
T ss_conf             99999999825899994259


Done!