RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780650|ref|YP_003065063.1| hypothetical protein
CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)



>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
           thermoacetica [TaxId: 1525]}
          Length = 549

 Score = 28.2 bits (63), Expect = 0.39
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 114 TELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEA 165
              P  F  L      ++ +I  +  EIY AD    +         I+  E+
Sbjct: 423 ESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAE---ADKAIQRYES 471


>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit,
           NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
          Length = 150

 Score = 25.9 bits (56), Expect = 2.1
 Identities = 7/30 (23%), Positives = 18/30 (60%)

Query: 120 FKNLVERSSQLQRRIVLLDQEIYRADFDEI 149
           ++NLV  +   Q+ ++  D+E+++ +   I
Sbjct: 1   YQNLVSEAGLTQKLLIHGDKELFQHELKTI 30


>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
           KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 433

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 13/104 (12%)

Query: 2   SNRVSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDR---EGHLLSKTLPRAISKLY 58
            N     I   + +    + K LY  S      +         E  L           L 
Sbjct: 242 KNSFKARI-YKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARIPAEHLN 300

Query: 59  T---SESVLLTTRLMQMVSWLFLQRALEDGNMTLEQVMSEKEKI 99
                E   L +R      W  +  A++ G+     +   K ++
Sbjct: 301 VKPLEEQHPLESRKA----WYDVAGAIKLGDF--NLIAKTKTEL 338


>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
          Length = 484

 Score = 25.3 bits (55), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 78  LQRALEDGN---MTLE-QVMSEKEKIKFDYSGLDSTVPGWTELP 117
           L  A++ G+     L  QV+  +E  KFD+  LD+T   W ++P
Sbjct: 241 LVGAIKKGDFPKWDLYVQVLKPEELAKFDFDPLDATKI-WPDVP 283


>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f
          complex {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 212

 Score = 24.6 bits (53), Expect = 4.8
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 44 HLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFL 78
           + SK +P  ++  Y    +  T  L+Q+ +   +
Sbjct: 17 DITSKYVPPHVNIFYCIGGITFTCFLVQVATGFAM 51


>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta
           {Methanosarcina thermophila [TaxId: 2210]}
          Length = 332

 Score = 24.3 bits (52), Expect = 5.8
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 119 FFKNLVERSSQLQRRIVL---LDQEIYRA 144
           F + + ER+ +L + I L    D    +A
Sbjct: 3   FLEKISERAKKLNKTIALPETEDIRTLQA 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 595,569
Number of extensions: 25103
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 9
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)