Query         gi|254780651|ref|YP_003065064.1| hypothetical protein CLIBASIA_02690 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 14:47:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780651.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3cmw_A Protein RECA, recombin  13.9      65  0.0019   16.2   0.9   15   16-30     10-24  (71)
  2 >3cmw_A Protein RECA, recombin  13.9      65  0.0019   16.2   0.9   15   16-30     10-24  (71)
  3 >3cmw_A Protein RECA, recombin  13.9      65  0.0019   16.2   0.9   15   16-30     10-24  (71)
  4 >3cmw_A Protein RECA, recombin  13.0      72  0.0021   16.0   0.9   15   16-30     10-24  (65)
  5 >3cmu_A Protein RECA, recombin  12.8      65  0.0019   16.2   0.6   15   16-30     10-24  (71)
  6 >3cmu_A Protein RECA, recombin  12.8      65  0.0019   16.2   0.6   15   16-30     10-24  (71)
  7 >3cmw_A Protein RECA, recombin  12.5      77  0.0023   15.9   0.9   15   16-30     10-24  (70)
  8 >3cmu_A Protein RECA, recombin  11.9      72  0.0021   16.0   0.6   15   16-30     10-24  (65)
  9 >3cmu_A Protein RECA, recombin  11.5      77  0.0023   15.9   0.6   15   16-30     10-24  (70)
 10 >3cmu_A Protein RECA, recombin  11.5      77  0.0023   15.9   0.6   15   16-30     10-24  (70)

No 1  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:594-664)
Probab=13.93  E-value=65  Score=16.18  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.3

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-++|-+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (71)
T 3cmw_A           10 VKEKLIEKAGAWYSY   24 (71)
T ss_dssp             HHTTSEEEETTEEEE
T ss_pred             CCCCEEECCCCCCCC
T ss_conf             767727438862224


No 2  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:943-1013)
Probab=13.93  E-value=65  Score=16.18  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.3

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-++|-+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (71)
T 3cmw_A           10 VKEKLIEKAGAWYSY   24 (71)
T ss_dssp             HHTTSEEEETTEEEE
T ss_pred             HHCCHHHHCCCCEEE
T ss_conf             113624323741441


No 3  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:245-315)
Probab=13.93  E-value=65  Score=16.18  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.3

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-++|-+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (71)
T 3cmw_A           10 VKEKLIEKAGAWYSY   24 (71)
T ss_dssp             HHTTSEEEETTEEEE
T ss_pred             CHHHHHHCCCCHHHC
T ss_conf             736564067741210


No 4  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1642-1706)
Probab=12.99  E-value=72  Score=15.97  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.2

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-|+|.+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (65)
T 3cmw_A           10 VKEKLIEKAGAWYSY   24 (65)
T ss_dssp             HHTTSEEEETTEEEE
T ss_pred             HHHHHHHCCCCEEEE
T ss_conf             010121115632763


No 5  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:943-1013)
Probab=12.82  E-value=65  Score=16.18  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.2

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-++|-+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (71)
T 3cmu_A           10 VKEKLIEKAGAWYSY   24 (71)
T ss_dssp             HHTTSSEEETTEEEE
T ss_pred             CCCCEEECCCCEEEE
T ss_conf             667504137853762


No 6  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:594-664)
Probab=12.82  E-value=65  Score=16.18  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.2

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-++|-+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (71)
T 3cmu_A           10 VKEKLIEKAGAWYSY   24 (71)
T ss_dssp             HHTTSSEEETTEEEE
T ss_pred             CCCCEEEECCCCCCC
T ss_conf             786435642553300


No 7  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1293-1362)
Probab=12.48  E-value=77  Score=15.85  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.2

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-|+|.+.||+|-|
T Consensus        10 v~~~iI~KsGsWysy   24 (70)
T 3cmw_A           10 VKEKLIEKAGAWYSY   24 (70)
T ss_dssp             HHTTSEEEETTEEEE
T ss_pred             CCCCEECCCCCEEEC
T ss_conf             767524267751532


No 8  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1986-2050)
Probab=11.93  E-value=72  Score=15.97  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.2

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-|+|.+.||+|.|
T Consensus        10 ~~~~iI~KsGsWysy   24 (65)
T 3cmu_A           10 VKEKLIEKAGAWYSY   24 (65)
T ss_dssp             HHTTSSEEETTEEEE
T ss_pred             HHHCHHHCCCCEEEE
T ss_conf             650421104724875


No 9  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:245-314)
Probab=11.46  E-value=77  Score=15.85  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=12.2

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-|+|.+.||+|-|
T Consensus        10 v~~~iI~KsGsWysy   24 (70)
T 3cmu_A           10 VKEKLIEKAGAWYSY   24 (70)
T ss_dssp             HHTTSSEEETTEEEE
T ss_pred             HHHHHHHHHCCEEEE
T ss_conf             378888751430220


No 10 
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1638-1707)
Probab=11.46  E-value=77  Score=15.85  Aligned_cols=15  Identities=20%  Similarity=0.725  Sum_probs=0.0

Q ss_pred             HHHCCEEECCCEECC
Q ss_conf             850413346822049
Q gi|254780651|r   16 MESGLVLRNGSFYRF   30 (30)
Q Consensus        16 mesglvlrngsfyrf   30 (30)
                      .+-|+|.+.||+|-|
T Consensus        10 v~~~iI~KsGsWysy   24 (70)
T 3cmu_A           10 VKEKLIEKAGAWYSY   24 (70)
T ss_dssp             HHTTSSEEETTEEEE
T ss_pred             CCCCEEECCCCEEEE
T ss_conf             677424058864782


Done!