Query gi|254780651|ref|YP_003065064.1| hypothetical protein CLIBASIA_02690 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 30 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 14:47:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780651.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cmw_A Protein RECA, recombin 13.9 65 0.0019 16.2 0.9 15 16-30 10-24 (71) 2 >3cmw_A Protein RECA, recombin 13.9 65 0.0019 16.2 0.9 15 16-30 10-24 (71) 3 >3cmw_A Protein RECA, recombin 13.9 65 0.0019 16.2 0.9 15 16-30 10-24 (71) 4 >3cmw_A Protein RECA, recombin 13.0 72 0.0021 16.0 0.9 15 16-30 10-24 (65) 5 >3cmu_A Protein RECA, recombin 12.8 65 0.0019 16.2 0.6 15 16-30 10-24 (71) 6 >3cmu_A Protein RECA, recombin 12.8 65 0.0019 16.2 0.6 15 16-30 10-24 (71) 7 >3cmw_A Protein RECA, recombin 12.5 77 0.0023 15.9 0.9 15 16-30 10-24 (70) 8 >3cmu_A Protein RECA, recombin 11.9 72 0.0021 16.0 0.6 15 16-30 10-24 (65) 9 >3cmu_A Protein RECA, recombin 11.5 77 0.0023 15.9 0.6 15 16-30 10-24 (70) 10 >3cmu_A Protein RECA, recombin 11.5 77 0.0023 15.9 0.6 15 16-30 10-24 (70) No 1 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:594-664) Probab=13.93 E-value=65 Score=16.18 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.3 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-++|-+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (71) T 3cmw_A 10 VKEKLIEKAGAWYSY 24 (71) T ss_dssp HHTTSEEEETTEEEE T ss_pred CCCCEEECCCCCCCC T ss_conf 767727438862224 No 2 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:943-1013) Probab=13.93 E-value=65 Score=16.18 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.3 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-++|-+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (71) T 3cmw_A 10 VKEKLIEKAGAWYSY 24 (71) T ss_dssp HHTTSEEEETTEEEE T ss_pred HHCCHHHHCCCCEEE T ss_conf 113624323741441 No 3 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:245-315) Probab=13.93 E-value=65 Score=16.18 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.3 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-++|-+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (71) T 3cmw_A 10 VKEKLIEKAGAWYSY 24 (71) T ss_dssp HHTTSEEEETTEEEE T ss_pred CHHHHHHCCCCHHHC T ss_conf 736564067741210 No 4 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1642-1706) Probab=12.99 E-value=72 Score=15.97 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.2 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-|+|.+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (65) T 3cmw_A 10 VKEKLIEKAGAWYSY 24 (65) T ss_dssp HHTTSEEEETTEEEE T ss_pred HHHHHHHCCCCEEEE T ss_conf 010121115632763 No 5 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:943-1013) Probab=12.82 E-value=65 Score=16.18 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.2 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-++|-+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (71) T 3cmu_A 10 VKEKLIEKAGAWYSY 24 (71) T ss_dssp HHTTSSEEETTEEEE T ss_pred CCCCEEECCCCEEEE T ss_conf 667504137853762 No 6 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:594-664) Probab=12.82 E-value=65 Score=16.18 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.2 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-++|-+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (71) T 3cmu_A 10 VKEKLIEKAGAWYSY 24 (71) T ss_dssp HHTTSSEEETTEEEE T ss_pred CCCCEEEECCCCCCC T ss_conf 786435642553300 No 7 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:1293-1362) Probab=12.48 E-value=77 Score=15.85 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.2 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-|+|.+.||+|-| T Consensus 10 v~~~iI~KsGsWysy 24 (70) T 3cmw_A 10 VKEKLIEKAGAWYSY 24 (70) T ss_dssp HHTTSEEEETTEEEE T ss_pred CCCCEECCCCCEEEC T ss_conf 767524267751532 No 8 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1986-2050) Probab=11.93 E-value=72 Score=15.97 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.2 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-|+|.+.||+|.| T Consensus 10 ~~~~iI~KsGsWysy 24 (65) T 3cmu_A 10 VKEKLIEKAGAWYSY 24 (65) T ss_dssp HHTTSSEEETTEEEE T ss_pred HHHCHHHCCCCEEEE T ss_conf 650421104724875 No 9 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:245-314) Probab=11.46 E-value=77 Score=15.85 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.2 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-|+|.+.||+|-| T Consensus 10 v~~~iI~KsGsWysy 24 (70) T 3cmu_A 10 VKEKLIEKAGAWYSY 24 (70) T ss_dssp HHTTSSEEETTEEEE T ss_pred HHHHHHHHHCCEEEE T ss_conf 378888751430220 No 10 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1638-1707) Probab=11.46 E-value=77 Score=15.85 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=0.0 Q ss_pred HHHCCEEECCCEECC Q ss_conf 850413346822049 Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30) Q Consensus 16 mesglvlrngsfyrf 30 (30) .+-|+|.+.||+|-| T Consensus 10 v~~~iI~KsGsWysy 24 (70) T 3cmu_A 10 VKEKLIEKAGAWYSY 24 (70) T ss_dssp HHTTSSEEETTEEEE T ss_pred CCCCEEECCCCEEEE T ss_conf 677424058864782 Done!