RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus str. psy62] (339 letters) >gnl|CDD|185401 PTZ00019, PTZ00019, fructose-bisphosphate aldolase; Provisional. Length = 355 Score = 400 bits (1030), Expect = e-112 Identities = 164/324 (50%), Positives = 209/324 (64%), Gaps = 4/324 (1%) Query: 12 MLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEET 71 + GKGILAADES TI+KRF I LE+TE +RR YRE+LF + QYIS ++L+EET Sbjct: 14 IAAPGKGILAADESTGTIKKRFDPIGLENTEENRRAYRELLFTTEGLEQYISGVILFEET 73 Query: 72 LYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGA 131 +YQ A G +FV+L+ G++ GIKVD+GL P GE T GLD L R K+Y AGA Sbjct: 74 VYQKAPSGKTFVELLKEKGIVPGIKVDKGLVTLPGTDGETSTQGLDGLAERAKKYYKAGA 133 Query: 132 RVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIER 189 R AKWR VL + PS ++ N LARYA +CQ GLVPIVEPE+L++G H+IE Sbjct: 134 RFAKWRAVLKIDPAKGKPSELAIQENAWTLARYAAICQENGLVPIVEPEILIDGSHSIEV 193 Query: 190 CAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIFKRVV 248 C +VTE VL +F L V EG +LK NM+ PG + +E+A T++ R V Sbjct: 194 CQKVTEKVLAEVFKALNDHGVLLEGCLLKPNMVTPGSDCGVKATPQEVAFYTVRTLSRTV 253 Query: 249 PCAVQGIAFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVLRAWNGKQDNV 307 P A+ G+ FLSGGQSE++A+ L+AMN + PW LSFSYGRALQ S L+ W GK +NV Sbjct: 254 PPALPGVMFLSGGQSEEEASLNLNAMNKLTLPRPWALSFSYGRALQSSALKTWKGKDENV 313 Query: 308 VVAQRVLSHRAHMNSLATKGCWKK 331 AQ+ L HRA NSLA G +K Sbjct: 314 AAAQKALLHRAKANSLAQLGKYKG 337 >gnl|CDD|178074 PLN02455, PLN02455, fructose-bisphosphate aldolase. Length = 358 Score = 382 bits (983), Expect = e-107 Identities = 163/316 (51%), Positives = 210/316 (66%), Gaps = 1/316 (0%) Query: 16 GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQN 75 GKGILAADES TI KR +I++E+ E++R+ RE+LF A A+QY+S ++L+EETLYQ Sbjct: 23 GKGILAADESTGTIGKRLASINVENVESNRQALRELLFTAPGALQYLSGVILFEETLYQK 82 Query: 76 AQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAK 135 DG FVD++ +GVL GIKVD+G GE T GLD L R +Y +AGAR AK Sbjct: 83 TSDGKPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAK 142 Query: 136 WRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTE 195 WR VL + PS ++ N LARYA++CQ GLVPIVEPE+L++G H I++CA VTE Sbjct: 143 WRAVLKIGPTEPSELAIQENAQGLARYAIICQENGLVPIVEPEILVDGSHDIKKCAAVTE 202 Query: 196 FVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVVPCAVQGI 255 VL + L V EG +LK NM+ PG +P+VS E IA T++ +R VP AV GI Sbjct: 203 RVLAACYKALNDHHVLLEGTLLKPNMVTPGSDSPKVSPEVIAEYTVRALQRTVPPAVPGI 262 Query: 256 AFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVL 314 FLSGGQSE++AT L+AMN + PW LSFS+GRALQ+S L+AW GK++NV AQ Sbjct: 263 VFLSGGQSEEEATLNLNAMNKLKTLKPWTLSFSFGRALQQSTLKAWAGKKENVAKAQAAF 322 Query: 315 SHRAHMNSLATKGCWK 330 R NS AT G +K Sbjct: 323 LVRCKANSEATLGKYK 338 >gnl|CDD|178045 PLN02425, PLN02425, probable fructose-bisphosphate aldolase. Length = 390 Score = 293 bits (752), Expect = 3e-80 Identities = 156/325 (48%), Positives = 200/325 (61%), Gaps = 3/325 (0%) Query: 16 GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQN 75 G+GILA DESNAT KR +I L++TE +R+ YR++L +YIS +L+EETLYQ+ Sbjct: 58 GRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPGLGEYISGAILFEETLYQS 117 Query: 76 AQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAK 135 DG FVD + ++ GIKVD+GL P P E GLD L R +Y GAR AK Sbjct: 118 TTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAK 177 Query: 136 WRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTE 195 WR V+S+ PS VK LARYA + Q+ GLVPIVEPE+L++GDH IER EV E Sbjct: 178 WRTVVSIP-CGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAE 236 Query: 196 FVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIFKRVVPCAVQG 254 V +F L V FEG++LK +M+ PG + S E IA T+ + +R VP AV G Sbjct: 237 KVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLTMLRRRVPPAVPG 296 Query: 255 IAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVL 314 I FLSGGQSE +AT L+AMN + PW +SFSY RALQ SVL+ W G+ +NV AQ+ L Sbjct: 297 IMFLSGGQSEVEATLNLNAMNQSPN-PWHVSFSYARALQNSVLKTWQGRPENVEAAQKAL 355 Query: 315 SHRAHMNSLATKGCWKKSLENSNGR 339 RA NSLA G + E+ + Sbjct: 356 LVRAKANSLAQLGRYSAEGESEEAK 380 >gnl|CDD|177872 PLN02227, PLN02227, fructose-bisphosphate aldolase I. Length = 399 Score = 268 bits (686), Expect = 2e-72 Identities = 151/337 (44%), Positives = 206/337 (61%), Gaps = 3/337 (0%) Query: 4 DLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYIS 63 +L + + G GI+A DESNAT KR +I LE+TE +R+ YR +L A QYIS Sbjct: 55 ELVKTAKTIASPGHGIMAMDESNATCGKRLASIGLENTEANRQAYRTLLVSAPGLGQYIS 114 Query: 64 SILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 +L+EETLYQ+ DG VD++ ++ GIKVD+GL P E GLD L R Sbjct: 115 GAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASRT 174 Query: 124 KQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEG 183 Y GAR AKWR V+S+ + PS VK LARYA + Q++GLVPIVEPE++++G Sbjct: 175 AAYYQQGARFAKWRTVVSIPNG-PSALAVKEAAWGLARYAAISQDSGLVPIVEPEIMLDG 233 Query: 184 DHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNTIK 242 +H I+R +V E V +F L V FEG++LK +M+ PG A + + E++AS T+K Sbjct: 234 EHGIDRTYDVAEKVWAEVFFYLAQNNVMFEGILLKPSMVTPGAEATDRATPEQVASYTLK 293 Query: 243 IFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNG 302 + + +P AV GI FLSGGQSE +AT L+AMN + PW +SFSY RALQ + L+ W G Sbjct: 294 LLRNRIPPAVPGIMFLSGGQSELEATLNLNAMNQAPN-PWHVSFSYARALQNTCLKTWGG 352 Query: 303 KQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSNGR 339 K++NV AQ +L RA NSLA G + E+ + Sbjct: 353 KEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAK 389 >gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed. Length = 296 Score = 40.2 bits (95), Expect = 7e-04 Identities = 64/245 (26%), Positives = 96/245 (39%), Gaps = 67/245 (27%) Query: 67 LYEETLYQNAQDGTSFVD-LISSSGVLVGIKVDRGL----------KPYPLYPGEHITVG 115 L+E+T+ + +G D L GV+ +KVD+GL KP P Sbjct: 74 LFEQTMDREI-EGKPTADYLWEKKGVVPFLKVDKGLAEEANGVQLMKPIP---------N 123 Query: 116 LDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIV 175 LDDL L + + G K R V+ ++ VV + + +L AGLVPI+ Sbjct: 124 LDDL---LDRAVEKGIFGTKMRSVIKEANEQGIAAVVAQQFEVAKQ--IL--AAGLVPII 176 Query: 176 EPEVLMEGDHTIERCAEVTEFVLRTLFNELYTM----RVCFEGLVL--KSNMILPGKSAP 229 EPEV D AE + + +L + +V + L + ++N+ P Sbjct: 177 EPEV----DINSPDKAEAEAILKAEILKQLDALPEDQQVMLK-LTIPTEANLYKELIDHP 231 Query: 230 QVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYG 289 +V RVV LSGG S +A L+ + + SFS Sbjct: 232 RVL-------------RVVA--------LSGGYSRDEANELLARNHGL-----IASFS-- 263 Query: 290 RALQE 294 RAL E Sbjct: 264 RALTE 268 >gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional. Length = 395 Score = 30.8 bits (70), Expect = 0.55 Identities = 10/22 (45%), Positives = 17/22 (77%) Query: 115 GLDDLDVRLKQYKDAGARVAKW 136 GL L VRL+Q++++ +VA+W Sbjct: 255 GLRTLGVRLRQHEESSLKVAEW 276 >gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis. Length = 412 Score = 29.3 bits (66), Expect = 1.5 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%) Query: 104 YPLYPGEHITVGLDDLDV----------RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVK 153 +Y G+ I +D V RL++Y + R+V+ V V+P+ T+ Sbjct: 13 KEVYAGDLIVAEIDQAMVHDITAPLAIRRLEEYGIDKVFDPE-RIVIVVDHVVPASTIKA 71 Query: 154 ANMHILAR 161 A M LAR Sbjct: 72 AEMQKLAR 79 >gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional. Length = 394 Score = 28.9 bits (65), Expect = 1.9 Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 115 GLDDLDVRLKQYKDAGARVAKW 136 GL L VRL Q++ +VA W Sbjct: 252 GLRTLGVRLAQHEKNALKVANW 273 >gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional. Length = 334 Score = 28.5 bits (64), Expect = 2.9 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 255 IAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWN--GKQDNVVVAQR 312 +A L GG + A A + P +F A+ E+ L AW K +V Q Sbjct: 87 MALLPGGGYAEYAVA---HKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQS 143 Query: 313 VLSHRA 318 VL H Sbjct: 144 VLIHAG 149 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 28.4 bits (64), Expect = 3.0 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 12/70 (17%) Query: 213 EGLVL----KSNMILPG-----KSAPQV--SDEEIA-SNTIKIFKRVVPCAVQGIAFLSG 260 +GLVL K NM L ++ + +DE+ A S+ I++F P Q I LSG Sbjct: 339 DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSG 398 Query: 261 GQSEQDATAR 270 G ++ A AR Sbjct: 399 GNQQKVAIAR 408 >gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). Length = 245 Score = 27.8 bits (62), Expect = 4.0 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Query: 137 RVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIV 175 ++V+ S VLP + +++ L R+ V+ + + PI+ Sbjct: 39 QIVIVSSAVLPEL-----SLNQLDRFLVVAEAQNIEPII 72 >gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 377 Score = 27.1 bits (60), Expect = 6.5 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 115 GLDDLDVRLKQYKDAGARVAKW 136 GL L VRLKQ++++ +AKW Sbjct: 241 GLRTLGVRLKQHQESSLAIAKW 262 >gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein. Length = 2052 Score = 27.1 bits (59), Expect = 6.9 Identities = 11/22 (50%), Positives = 17/22 (77%) Query: 249 PCAVQGIAFLSGGQSEQDATAR 270 P A+ G+A ++GGQS QDA ++ Sbjct: 245 PAALGGMASMTGGQSYQDARSQ 266 >gnl|CDD|181073 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional. Length = 239 Score = 27.0 bits (60), Expect = 7.4 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 1 MMQDLENSVAMMLQAGKGI 19 M Q L+ A++ AG+GI Sbjct: 1 MAQSLQGKNALITGAGRGI 19 >gnl|CDD|179361 PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional. Length = 611 Score = 26.7 bits (59), Expect = 8.4 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%) Query: 272 SAMNSMGDCPWRLSFSYGR--ALQESVLRAWNGKQDNVVVAQ-----RVLSHRAHMNSLA 324 + + M C L F + AL + VL + VV+ Q RV HRA + L Sbjct: 384 AQLELMETCAAELKFLFLPYMALTDEVLACLKAHPEVVVILQSNHPNRVGEHRALAHQLM 443 Query: 325 TKGC 328 G Sbjct: 444 VAGL 447 >gnl|CDD|184003 PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta; Provisional. Length = 278 Score = 26.6 bits (59), Expect = 9.6 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 281 PWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHR 317 R + G+A+ ++ +W + VV+ LSH+ Sbjct: 159 ARR-CYKLGQAIGRAI-ASWPSDERVVVIGTGGLSHQ 193 >gnl|CDD|184142 PRK13558, PRK13558, bacterio-opsin activator; Provisional. Length = 665 Score = 26.7 bits (59), Expect = 9.6 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%) Query: 70 ETLYQNAQDGTSFVDLISSSGV-LVGIKVDRG 100 E L + G S V L+S G + + DR Sbjct: 523 ECLVEFTLSGDSLVRLLSERGGRVQDMHADRD 554 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.133 0.381 Gapped Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,279,274 Number of extensions: 332662 Number of successful extensions: 644 Number of sequences better than 10.0: 1 Number of HSP's gapped: 634 Number of HSP's successfully gapped: 23 Length of query: 339 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 245 Effective length of database: 3,963,321 Effective search space: 971013645 Effective search space used: 971013645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.9 bits)