RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase
[Candidatus Liberibacter asiaticus str. psy62]
(339 letters)
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation,
glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A
{Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A
3dfp_A 3dfq_A ... (A:)
Length = 341
Score = 371 bits (953), Expect = e-104
Identities = 154/330 (46%), Positives = 207/330 (62%), Gaps = 3/330 (0%)
Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM-QY 61
++L + ++ GKGILAADES +I KR ++I E+TE +RR YR++L A D +
Sbjct: 10 KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPC 69
Query: 62 ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
I ++L+ ETLYQ A DG F +I S G +VGIKVD+G+ P GE T GL L
Sbjct: 70 IGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSE 129
Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
R QYK GA AKWR VL + + PS + N ++LARYA +CQ G+VPIVEPE+L
Sbjct: 130 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 189
Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240
+GDH ++RC VTE VL ++ L + EG +LK NM+ PG + + S EEIA T
Sbjct: 190 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 249
Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRA 299
+ +R VP AV G+ FLSGGQSE++A+ L+A+N PW L+FSYGRALQ S L+A
Sbjct: 250 VTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKA 309
Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCW 329
W GK++N+ AQ RA NSLA +G +
Sbjct: 310 WGGKKENLKAAQEEYVKRALANSLACQGKY 339
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal
tail, lyase; 1.59A {Leishmania mexicana} (A:)
Length = 391
Score = 365 bits (939), Expect = e-102
Identities = 139/341 (40%), Positives = 203/341 (59%), Gaps = 3/341 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
+L +V + GKG+LAADES + KRF+ I L +TE RR YR ++ A+ Q
Sbjct: 41 YESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 100
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLY-PGEHITVGLDDL 119
YIS ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P GE +T GLD
Sbjct: 101 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGY 160
Query: 120 DVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV 179
R Y G R KWR V + + S + V+ N LARYA+L Q +GLVPIVEPEV
Sbjct: 161 VKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEV 220
Query: 180 LMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQV-SDEEIAS 238
+++G H I+ C V+E V R + L V +EG +LK NM++PG + + + E++A
Sbjct: 221 MIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAH 280
Query: 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVL 297
T+ R +P + G+ FLSGG SE A+ L+A+N+ P+ LSFSY RALQ S L
Sbjct: 281 YTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 340
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSNG 338
+AW GK+ + +R HRA MNS+A G +K+S ++++
Sbjct: 341 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASS 381
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion
machinery, structural genomics, PSI, protein structure
initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A
1a5c_A (A:)
Length = 369
Score = 361 bits (927), Expect = e-101
Identities = 152/339 (44%), Positives = 210/339 (61%), Gaps = 3/339 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
+ ++L + ++QAGKGILAADES TI+KRF I LE+T +R YR++LF K +
Sbjct: 18 VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 77
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
+IS +L+EETL+Q + G V+L+ + ++ GIKVD+GL P E T GLD L
Sbjct: 78 FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 137
Query: 121 VRLKQYKDAGARVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
R K+Y AGAR AKWR VL + P+ + LARYA +CQ LVPIVEPE
Sbjct: 138 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 197
Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIA 237
+L +G H+IE CA VT+ VL +F L V EG +LK NM+ G + + +++
Sbjct: 198 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 257
Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
T++ +R VP A+ G+ FLSGGQSE++A+ L+++N++G PW L+FSYGRALQ SVL
Sbjct: 258 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 317
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
W GK++NV A+ VL RA NSLAT G +K
Sbjct: 318 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGE 356
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, glycolysis, lyase, structural
genomics; HET: CIT; 2.10A {Babesia bovis} (A:)
Length = 379
Score = 359 bits (922), Expect = e-100
Identities = 160/340 (47%), Positives = 207/340 (60%), Gaps = 3/340 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
++L + + + GKGILAADES TIQKRF + +E+TE +R +YR +LF K +
Sbjct: 30 RAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGK 89
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
YIS +L+EETL+Q A +G + VDL+ + G+L GIKVD+GL P E T GLD L
Sbjct: 90 YISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLA 149
Query: 121 VRLKQYKDAGARVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
R ++Y +AGAR AKWR VLS+ PS + H LARYA +CQ GLVPIVEPE
Sbjct: 150 ERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPE 209
Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIA 237
+L +GDH+IE CAEVTE VL +F L +V EG +LK NM+ G + + + +
Sbjct: 210 ILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVG 269
Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
T + +R VP A+ G+ FLSGGQSE AT L+ +N PW LSFSYGRALQ SVL
Sbjct: 270 FLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVL 329
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSN 337
+ WNG N AQ VL A NS A+ G K L +
Sbjct: 330 KTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDG 369
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel,
structural genomics, PSI-2, protein structure
initiative; 2.46A {Porphyromonas gingivalis W83} (A:)
Length = 296
Score = 280 bits (718), Expect = 1e-76
Identities = 54/333 (16%), Positives = 101/333 (30%), Gaps = 50/333 (15%)
Query: 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDY--------REMLF 53
+ E + QA + A D+S + K KA ++ + R
Sbjct: 3 AXNKE-QLQQXRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEXFDLIHQXRTRXI 61
Query: 54 RAKDAM-QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHI 112
+ I ++L+E T + + L ++ +KVD+GL+ G +
Sbjct: 62 TSPAFATGKIIGVILFERTXRGKIEGXPTADFLWEKRHIVPFLKVDKGLQD--EANGVQL 119
Query: 113 TVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLV 172
+L ++ K R V+ + ++ + ++ + GLV
Sbjct: 120 XKPFPELGKLCEEAVGYHVFGTKXRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLV 175
Query: 173 PIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVS 232
PI+EPEV + + + +L L E + LK + +
Sbjct: 176 PILEPEVDIHCPEKAKAEEILKRELLAQL-------DKXTEPVXLKITIPTVDNFYKE-- 226
Query: 233 DEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRAL 292
+ + LSGG S + A LS + S+ RAL
Sbjct: 227 -------------IIEHPXXLRVVALSGGYSREQANELLS-------RNHGVIASFSRAL 266
Query: 293 QESVLRAWNGKQDNVVVAQRVLSHRAHMNSLAT 325
L A + + A+
Sbjct: 267 V-EGLSARQTDAEFNAXLE----ASIEDVYQAS 294
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate
binding, tagatose-bisphosphate aldolase,
D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A
{Streptococcus mutans} PDB: 3jrk_A (A:)
Length = 332
Score = 188 bits (477), Expect = 1e-48
Identities = 41/335 (12%), Positives = 89/335 (26%), Gaps = 27/335 (8%)
Query: 22 ADESNATIQK--RFKAIHLESTENS------RRDYREMLFRAKDAMQYISSILLYEETLY 73
++ + QK + + S R + + + + ++ + +
Sbjct: 1 SNAXILSQQKYNYLAKVSDSNGVISALAFDQRGALKCLXAQYQXKEPTVAQXEELKVLVS 60
Query: 74 QNAQDGTSFVDLIS----SSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL--DVRLKQYK 127
+ S + L + + L + T L D D +K+ K
Sbjct: 61 EELTPYASSILLDPEYGLPAAQARDREAGLLLAYEKTGYDANTTSRLPDCLVDWSIKRLK 120
Query: 128 DAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL--MEGDH 185
+AGA K+ + V + R CQ + +E ++
Sbjct: 121 EAGADAVKFLLYYDVDGDPQVN---VQKQAYIERIGSECQAEDIPFFLEILTYDETISNN 177
Query: 186 TIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIF 244
+ A+V + R + L ++ + + F
Sbjct: 178 SSVEFAKVKVHKVNDAXKVFSAERFGIDVLKVEVPVNXVYVEGFAEGEVVYSKEEAAQAF 237
Query: 245 KRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQ 304
+ +LS G S + L + G GRA ++ + +
Sbjct: 238 REQEASTDLPYIYLSAGVSAELFQETLVFAHKAG--AKFNGVLCGRATWAGSVQVYXEEG 295
Query: 305 DNVVVAQRVLSHRAHMNSL-----ATKGCWKKSLE 334
S ++N L T W + +
Sbjct: 296 KEAARQWLRTSGLQNINELNKVLKTTASPWTEKVS 330
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA
domain, beta-sandwich, antiparallel beta-sheets,
phosphopeptide binding motif; NMR {Mus musculus} (A:)
Length = 119
Score = 33.0 bits (75), Expect = 0.057
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 54 RAKDAMQYISSILLYEETLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHI 112
R + L + + T V + + V ++ G L G+ +
Sbjct: 42 RGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPG-LSGSLSLGDVL 100
Query: 113 TVGLDDLDVRL 123
+ + L
Sbjct: 101 YLVNGLYPLTL 111
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP
hydrolase, alternative splicing, disease mutation, DNA
damage, DNA repair, DNA-binding; 1.65A {Homo sapiens}
(A:)
Length = 102
Score = 32.6 bits (74), Expect = 0.086
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 71 TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
L G V + + + + + + + L PG+ + + + +
Sbjct: 46 QLKAECNKGYVKVKQVGVNPTSIDSVVIGKD-QEVKLQPGQVLHMVNELYPYIV 98
>3gnf_B MVP, major vault protein; beta sheets, acetylation,
cytoplasm, phosphoprotein, ribonucleoprotein, structural
protein; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A
(B:283-387)
Length = 105
Score = 31.9 bits (73), Expect = 0.12
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 96 KVDRGLKPYPLYPGEHITVGLDDLDV----------RLKQYKDAGARVAKWRV 138
+V +G K + L PGE + G+ D+ V L+ ++
Sbjct: 22 RVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGEGEERVAHQ 74
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta
sandwich, P-loop, transferase; 2.80A {Mus musculus} (C:)
Length = 143
Score = 32.0 bits (72), Expect = 0.12
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 71 TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
L + + T V + + V ++ G L G+ + + + L
Sbjct: 52 ELIADPESRTVAVKQLGVNPSTVGVHELKPG-LSGSLSLGDVLYLVNGLYPLTL 104
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured
domain, forkhead-associated domain (FHA) domain,
PRE-mRNA retention and splicing; 2.40A {Saccharomyces
cerevisiae} PDB: 2jkd_A (A:)
Length = 205
Score = 31.2 bits (69), Expect = 0.22
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 83 VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
+DL SS+G + + + + L G+ +T+ + D
Sbjct: 158 MDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLSEFEEDNDY 198
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein
kinase, FHA domain, alternative splicing, ATP-binding,
cell cycle, disease mutation; 3.00A {Homo sapiens} PDB:
3i6w_A (A:1-125)
Length = 125
Score = 30.8 bits (69), Expect = 0.28
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 73 YQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
++++ S +G V V +G K PL I + L V +
Sbjct: 67 VGPKNSYIAYIEDHSGNGTFVNTELVGKG-KRRPLNNNSEIALSLSRNKVFV 117
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain,
NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
(A:)
Length = 140
Score = 30.4 bits (68), Expect = 0.31
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 71 TLYQNAQDGTSFV-DLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQ 125
L + F+ DL S+ G + I+++ KP + ++ G L++
Sbjct: 81 ALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH-KPQQIPIDSTVSFGASTRAYTLRE 136
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 30.2 bits (68), Expect = 0.43
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREML------FRAK 56
+EN + L+ + +++ N + +R + IH E + R F +
Sbjct: 42 DWVENELEA-LKLEAEEIPSEDQNEFLLERTREIHNE----AESQLRAAQQQWGNDFYKR 96
Query: 57 DAMQYISSI 65
D I+ +
Sbjct: 97 D--PRIAPL 103
Score = 27.2 bits (60), Expect = 3.2
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 26/92 (28%)
Query: 16 GKGIL-AADESNAT----------------IQKRFKAIHLESTENSRRDYREMLFRAK-- 56
GKGIL A E +++ + R I + EN +
Sbjct: 3 GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIK-DWVENELEALKLEAEEIPSE 61
Query: 57 DAMQYIS--SILLYEETLYQ--NAQD--GTSF 82
D +++ + ++ E Q AQ G F
Sbjct: 62 DQNEFLLERTREIHNEAESQLRAAQQQWGNDF 93
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured
domain, forkhead-associated domain (FHA) domain,
PRE-mRNA retention and splicing; 1.80A {Saccharomyces
cerevisiae} (A:)
Length = 158
Score = 30.2 bits (67), Expect = 0.45
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 83 VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
+DL SS+G + + + + L G+ +T+ + D
Sbjct: 111 MDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLSEFEEDNDY 151
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich,
ring finger protein 8, structural genomics, NPPSFA; NMR
{Homo sapiens} (A:)
Length = 145
Score = 30.1 bits (67), Expect = 0.45
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 71 TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
L QN + + +D S +GV + +++ + Y ++ G++I +G+ +
Sbjct: 65 VLKQNPEGQWTIMDNKSLNGVWLNRARLEPL-RVYSIHQGDYIQLGVPLENKEN 117
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann
fold; HET: CSF; 1.80A {Campylobacter jejuni} (A:1-241)
Length = 241
Score = 29.4 bits (66), Expect = 0.71
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 70 ETLYQNAQDGTSFVDLI-SSSGVLVGIKVDRGLKP-YPLYPGEHITV----GLDDLDVRL 123
TL Q+ +LI S+ ++ + +K Y +P H+ L D +
Sbjct: 60 YTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYF 119
Query: 124 K 124
K
Sbjct: 120 K 120
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA
domain, BRCT domain, phosphoprotein binding,
phosphoserine binding, DNA repair; HET: DNA TPO; 2.15A
{Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
(A:1-115)
Length = 115
Score = 29.2 bits (65), Expect = 0.73
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 82 FVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124
DL + G V V + I +G +
Sbjct: 70 VKDLDTKFGTKVNEKVVGQN-GDSYKEKDLKIQLGKCPFTINAY 112
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex,
cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae}
(A:)
Length = 127
Score = 29.2 bits (65), Expect = 0.75
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 83 VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124
++ IS++G + G KV++ L G+ ITVG+ L
Sbjct: 73 LNDISTNGTWLNGQKVEKN-SNQLLSQGDEITVGVGVESDILS 114
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} (A:)
Length = 118
Score = 27.7 bits (61), Expect = 2.3
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 77 QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGA 131
DL SS+G L+ +D L G+ I +G + +
Sbjct: 64 SGNWVIQDLGSSNGTLLNSNALDPE-TSVNLGDGDVIKLGEYTSILVNFVSGPSSG 118
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN;
1.80A {Homo sapiens} (A:178-336)
Length = 159
Score = 27.3 bits (60), Expect = 2.7
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 33 FKAIHLESTENSRRDYREMLFRAKDAMQYISSILL--------YEETLYQNAQDGTSFVD 84
+ L + R + + K Y ++L+ E+ L+ D +
Sbjct: 2 VTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH--QLT 59
Query: 85 LISSSGVLVGIKVDRGLKPYPLYP 108
+ + + V + G+ P
Sbjct: 60 EVGTMNIFVYWTHEDGVLELVTPP 83
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel,
Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A
{Escherichia coli} (A:648-818)
Length = 171
Score = 27.5 bits (61), Expect = 2.9
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 12/141 (8%)
Query: 42 ENSRRDYREMLFRAKDAMQYISSILLYEETLYQNA------QDGTSFVDLISSSGVLVGI 95
S YR + KD + Y S +E + T V+ + + +
Sbjct: 15 VISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAW 74
Query: 96 KVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKAN 155
+R + P L G + ++D + + + + L + + M KA+
Sbjct: 75 TQNRLMLPAWLGAGTALQKVVED--GKQSELEAMCRDWPFFSTRLGMLE----MVFAKAD 128
Query: 156 MHILARYAVLCQNAGLVPIVE 176
+ + Y + L P+ +
Sbjct: 129 LWLAEYYDQRLVDKALWPLGK 149
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural
genomics, PSI-2, protein structure initiative; 1.60A
{Thermobifida fusca YX} PDB: 2qvh_A* (A:73-188)
Length = 116
Score = 27.5 bits (61), Expect = 3.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 112 ITVGLDDLDVRLKQYKDAGARVAKWRV 138
TV + + +G AK +V
Sbjct: 2 ATVPAVGPEEAARIVASSGCTTAKVKV 28
>2p25_A Glyoxylase family protein; structural genomics, MCSG, PSI-2,
protein structure initiative, midwest center for
structural genomics; 1.70A {Enterococcus faecalis V583}
(A:68-126)
Length = 59
Score = 26.2 bits (58), Expect = 6.3
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 104 YPLYPGE-HITVGLDDLDVRLKQYKDAGARVAKWRV 138
YP G H+ ++ ++ + + G RV
Sbjct: 1 YPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRV 36
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
fixation, lyase; 3.00A {Zea mays} (A:708-880)
Length = 173
Score = 25.9 bits (57), Expect = 7.7
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 10/141 (7%)
Query: 42 ENSRRDYREMLFRAKDAMQYISSILLYEETLYQN------AQDGTSFVDLISSSGVLVGI 95
+ +YR ++ + ++Y S E N + + + + +
Sbjct: 15 VVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSW 74
Query: 96 KVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKAN 155
R P L G +D + K+ +RV L + + M K +
Sbjct: 75 TQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLE----MVFAKGD 130
Query: 156 MHILARYAVLCQNAGLVPIVE 176
I Y L L P +
Sbjct: 131 PGIAGLYDELLVAEELKPFGK 151
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,379,699
Number of extensions: 101001
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 27
Length of query: 339
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 250
Effective length of database: 1,947,404
Effective search space: 486851000
Effective search space used: 486851000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)