RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus str. psy62] (339 letters) >3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A 3dfq_A ... Length = 341 Score = 445 bits (1147), Expect = e-126 Identities = 154/330 (46%), Positives = 206/330 (62%), Gaps = 3/330 (0%) Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM-QY 61 ++L + ++ GKGILAADES +I KR ++I E+TE +RR YR++L A D + Sbjct: 10 KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPC 69 Query: 62 ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121 I ++L+ ETLYQ A DG F +I S G +VGIKVD+G+ P GE T GL L Sbjct: 70 IGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSE 129 Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181 R QYK GA AKWR VL + + PS + N ++LARYA +CQ G+VPIVEPE+L Sbjct: 130 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 189 Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGK-SAPQVSDEEIASNT 240 +GDH ++RC VTE VL ++ L + EG +LK NM+ PG + S EEIA T Sbjct: 190 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 249 Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299 + +R VP AV G+ FLSGGQSE++A+ L+A+N PW L+FSYGRALQ S L+A Sbjct: 250 VTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKA 309 Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCW 329 W GK++N+ AQ RA NSLA +G + Sbjct: 310 WGGKKENLKAAQEEYVKRALANSLACQGKY 339 >3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} Length = 347 Score = 413 bits (1062), Expect = e-116 Identities = 188/341 (55%), Positives = 236/341 (69%), Gaps = 5/341 (1%) Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM- 59 M + LE+ ++ AGKGILAADES ATI KRF++I +E TE++RR YREMLF AK+AM Sbjct: 5 MNERLEDIALTLVGAGKGILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKEAME 64 Query: 60 QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL 119 IS ++L++ETL Q A G DLI +G + GIKVD G KP +P E IT GLD L Sbjct: 65 SAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITEGLDGL 124 Query: 120 DVRLKQYKDAGARVAKWRVVLSVSD-VLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178 RLK Y GAR AKWR V+++ LP+ + N LARYA LCQ AGLVPIVEPE Sbjct: 125 RERLKDYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVEPE 184 Query: 179 VLMEG---DHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEE 235 VLM+G H+I RC EVT+ VL T+F EL+ RV FEG++LK NM++ GK A S EE Sbjct: 185 VLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVIDGKDARIASVEE 244 Query: 236 IASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQES 295 +A T+ + K+ VP AV GIAFLSGGQ++++ATA LSAMN++G PW+L+FSYGRALQ + Sbjct: 245 VAEKTVHVLKQTVPAAVPGIAFLSGGQTDEEATAHLSAMNALGALPWKLTFSYGRALQAA 304 Query: 296 VLRAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336 L+AW GK +N+VVAQ+ HRA MN LA G W K E S Sbjct: 305 ALKAWAGKNENIVVAQKAFCHRARMNHLAALGQWTKDQEKS 345 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, structural genomics; HET: CIT; 2.10A {Babesia bovis} Length = 379 Score = 410 bits (1056), Expect = e-115 Identities = 160/340 (47%), Positives = 207/340 (60%), Gaps = 3/340 (0%) Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60 ++L + + + GKGILAADES TIQKRF + +E+TE +R +YR +LF K + Sbjct: 30 RAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGK 89 Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120 YIS +L+EETL+Q A +G + VDL+ + G+L GIKVD+GL P E T GLD L Sbjct: 90 YISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLA 149 Query: 121 VRLKQYKDAGARVAKWRVVLSV--SDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178 R ++Y +AGAR AKWR VLS+ PS + H LARYA +CQ GLVPIVEPE Sbjct: 150 ERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPE 209 Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGK-SAPQVSDEEIA 237 +L +GDH+IE CAEVTE VL +F L +V EG +LK NM+ G + + + + Sbjct: 210 ILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVG 269 Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297 T + +R VP A+ G+ FLSGGQSE AT L+ +N PW LSFSYGRALQ SVL Sbjct: 270 FLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVL 329 Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSN 337 + WNG N AQ VL A NS A+ G K L + Sbjct: 330 KTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDG 369 >3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base, structural genomics; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* Length = 342 Score = 384 bits (987), Expect = e-107 Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 5/333 (1%) Query: 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQY 61 + L + +L+ GKGILAADE+ T+ +RF+ + + +TE +RR +RE+LF K +Y Sbjct: 11 LLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFSTKGIERY 70 Query: 62 ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121 I ++L +ET Q + G +L+ G+ +GIK+D+GL E I+VGL+DLD+ Sbjct: 71 IGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLI--DYKEKEKISVGLEDLDL 128 Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181 R K A AKWR + D +PS + N ILA+YA++CQ GLVPIVEPEV + Sbjct: 129 RCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQKNGLVPIVEPEVFL 188 Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240 EGD++++R EVT +L TL L V G+++K++ + G+ + + + +++A+ T Sbjct: 189 EGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSGQLSNEKYTPKKVATFT 248 Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299 ++ +PC + GI FLSGG +DA L+A+N C W LSFS+ RAL + VL Sbjct: 249 LRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLET 308 Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKG-CWKK 331 W G N+ AQ++L + +G W + Sbjct: 309 WRGDDSNIEEAQKILLETSFKACRGAEGKLWDQ 341 >2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A Length = 391 Score = 351 bits (902), Expect = 1e-97 Identities = 139/337 (41%), Positives = 201/337 (59%), Gaps = 3/337 (0%) Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62 +L +V + GKG+LAADES + KRF+ I L +TE RR YR ++ A+ QYI Sbjct: 43 SELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYI 102 Query: 63 SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKP-YPLYPGEHITVGLDDLDV 121 S ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P GE +T GLD Sbjct: 103 SGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVK 162 Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181 R Y G R KWR V + + S + V+ N LARYA+L Q +GLVPIVEPEV++ Sbjct: 163 RASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMI 222 Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240 +G H I+ C V+E V R + L V +EG +LK NM++PG + + E++A T Sbjct: 223 DGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYT 282 Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRA 299 + R +P + G+ FLSGG SE A+ L+A+N+ P+ LSFSY RALQ S L+A Sbjct: 283 VMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKA 342 Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336 W GK+ + +R HRA MNS+A G +K+S +++ Sbjct: 343 WGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDA 379 >2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structural genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A Length = 369 Score = 342 bits (879), Expect = 6e-95 Identities = 151/339 (44%), Positives = 210/339 (61%), Gaps = 3/339 (0%) Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60 + ++L + ++QAGKGILAADES TI+KRF I LE+T +R YR++LF K + Sbjct: 18 VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 77 Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120 +IS +L+EETL+Q + G V+L+ + ++ GIKVD+GL P E T GLD L Sbjct: 78 FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 137 Query: 121 VRLKQYKDAGARVAKWR--VVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178 R K+Y AGAR AKWR +V+ + P+ + LARYA +CQ LVPIVEPE Sbjct: 138 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 197 Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIA 237 +L +G H+IE CA VT+ VL +F L V EG +LK NM+ G + +++ Sbjct: 198 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 257 Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297 T++ +R VP A+ G+ FLSGGQSE++A+ L+++N++G PW L+FSYGRALQ SVL Sbjct: 258 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 317 Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336 W GK++NV A+ VL RA NSLAT G +K Sbjct: 318 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGE 356 >2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2, protein structure initiative; 2.46A {Porphyromonas gingivalis W83} Length = 296 Score = 252 bits (646), Expect = 7e-68 Identities = 54/305 (17%), Positives = 100/305 (32%), Gaps = 45/305 (14%) Query: 10 AMMLQAGKGILAADESNATIQKRFKAIHLESTENS--------RRDYREMLFRAKDAM-Q 60 M QA + A D+S + K KA ++ R + + Sbjct: 10 QQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFATG 69 Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120 I ++L+E T+ + + L ++ +KVD+GL+ G + +L Sbjct: 70 KIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQD--EANGVQLMKPFPELG 127 Query: 121 VRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL 180 ++ K R V+ + ++ + ++ + GLVPI+EPEV Sbjct: 128 KLCEEAVGYHVFGTKMRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLVPILEPEVD 183 Query: 181 MEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNT 240 + + + +L L E ++LK + Sbjct: 184 IHCPEKAKAEEILKRELLAQL-------DKMTEPVMLKITIPTVDNFYK----------- 225 Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAW 300 + + + + LSGG S + A LS + S+ RAL E L A Sbjct: 226 ----EIIEHPMMLRVVALSGGYSREQANELLSR-------NHGVIASFSRALVEG-LSAR 273 Query: 301 NGKQD 305 + Sbjct: 274 QTDAE 278 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 63.0 bits (153), Expect = 8e-11 Identities = 69/393 (17%), Positives = 109/393 (27%), Gaps = 182/393 (46%) Query: 1 MMQDLENSVAMMLQAGKGI--LAA---DESNATIQKR-------FKAIHLESTENSRRDY 48 + + EN L+ G I LAA E++ T+ K A + + + Sbjct: 87 CLTEFENCY---LE-GNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKS 141 Query: 49 REMLFRA---KDAMQYISSIL---------------LYEETLYQNAQDGTSFV-DLISSS 89 LFRA +A +I LY Y V DLI S Sbjct: 142 NSALFRAVGEGNAQLV--AIFGGQGNTDDYFEELRDLY--QTYH------VLVGDLIKFS 191 Query: 90 G-VLVGIKVD--RGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKW-----RV--- 138 L + K + GL+ + +W Sbjct: 192 AETLSELIRTTLDAEKVFTQ--------GLN---------------ILEWLENPSNTPDK 228 Query: 139 --VLS--VSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV--LMEG--DHT---- 186 +LS +S P + V++ LA Y V + G P E+ ++G H+ Sbjct: 229 DYLLSIPIS--CPLIGVIQ-----LAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLV 278 Query: 187 ----IERCAEVT---EF------VLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD 233 I AE F + LF F G ++ P S P Sbjct: 279 TAVAI---AETDSWESFFVSVRKAITVLF---------FIG--VRCYEAYPNTSLP---- 320 Query: 234 EEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQ 293 P ++ S ++ S M S+ + + +Q Sbjct: 321 ---------------PSILE--------DSLENNEGVPSPMLSISNLT-Q------EQVQ 350 Query: 294 ESV----------------LRAWNGKQDNVVVA 310 + V L NG N+VV+ Sbjct: 351 DYVNKTNSHLPAGKQVEISLV--NG-AKNLVVS 380 Score = 38.4 bits (89), Expect = 0.003 Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 77/223 (34%) Query: 6 ENSVAMMLQA---GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62 EN AM+ + GK +K FK I+ ST + R + +L A Q+ Sbjct: 1686 ENYSAMIFETIVDGK---------LKTEKIFKEINEHSTSYTFRSEKGLL----SATQFT 1732 Query: 63 SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVR 122 L TL + A +F DL S +GL P D Sbjct: 1733 QPAL----TLMEKA----AFEDLKS-----------KGLIP---------------ADAT 1758 Query: 123 LKQYKDAGARVAKWRVVLSVSDVLPSMTVVKA------NMHI------LAR--YAVLCQN 168 AG + ++ + S++DV+ ++V+ M + L R Y ++ N Sbjct: 1759 F-----AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813 Query: 169 AGLVPI-VEPEVLMEGDHTIERCAEVT----EFVLRTLFNELY 206 G V E L + +ER + T E V + N+ Y Sbjct: 1814 PGRVAASFSQEAL---QYVVERVGKRTGWLVEIVNYNVENQQY 1853 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 37.7 bits (86), Expect = 0.003 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 16/42 (38%) Query: 115 GLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANM 156 L L LK Y D D P++ +KA M Sbjct: 21 ALKKLQASLKLYAD---------------DSAPALA-IKATM 46 Score = 28.4 bits (62), Expect = 2.2 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 12/34 (35%) Query: 3 QDLENSVAMMLQAGKGILAADES------NATIQ 30 Q L+ LQA L AD+S AT++ Sbjct: 20 QALKK-----LQASLK-LYADDSAPALAIKATME 47 >1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Score = 31.1 bits (70), Expect = 0.42 Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 78 DGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLD 117 DG ++ IS++G + + L G+ ITVG+ Sbjct: 96 DGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVG 135 >2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Score = 30.4 bits (68), Expect = 0.55 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 71 TLYQNAQDGTSFV-DLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124 L + F+ DL S+ G +G KP + ++ G L+ Sbjct: 81 ALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLR 135 >3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Score = 29.6 bits (66), Expect = 1.1 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 82 FVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115 +DL SS+G + + + + L G+ +T+ Sbjct: 157 VMDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLS 190 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 29.1 bits (65), Expect = 1.5 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 9/45 (20%) Query: 186 TIERCAE----VTEFVLRTLFNELYTMRVCFE-GLVLKSNMILPG 225 + C E + V R ++ VC GLVL ++ Sbjct: 20 IVLTCPECKVYPPKIVERFSEGDV----VCALCGLVLSDKLVDTR 60 Score = 26.4 bits (58), Expect = 8.7 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 14/73 (19%) Query: 123 LKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYA---VLCQNAGLVPIVEPEV 179 + + R + L++ P V I+ R++ V+C GLV + Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPK--IVERFSEGDVVCALCGLV--LS--- 53 Query: 180 LMEGDHTIERCAE 192 D ++ +E Sbjct: 54 ----DKLVDTRSE 62 >1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883 Score = 28.5 bits (63), Expect = 2.4 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%) Query: 137 RVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVT 194 L + + M KA++ + Y + L P+ + E+ + I+ + Sbjct: 761 STRLGMLE----MVFAKADLWLAEYYDQRLVDKALWPLGK-ELRNLQEEDIKVVLAIA 813 >3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Score = 28.2 bits (62), Expect = 2.5 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 73 YQNAQDGTSF--VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115 ++N + +DL SS+G + + + + L G+ +T+ Sbjct: 99 FRNVRGILKCYVMDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLS 143 >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Length = 304 Score = 27.7 bits (61), Expect = 3.8 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%) Query: 226 KSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLS 285 K + + S+ + +R+ LS G E+ + G Sbjct: 195 KVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGAS----G 250 Query: 286 FSYGRALQESVLRAWNGKQ 304 F GRA+ SV+ + + Sbjct: 251 FLAGRAVWSSVIGLPDTEL 269 >3gnf_B MVP, major vault protein; beta sheets, acetylation, cytoplasm, phosphoprotein, ribonucleoprotein, structural protein; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A Length = 387 Score = 26.7 bits (59), Expect = 7.5 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 17/114 (14%) Query: 23 DESNATIQKRFKAIHLESTEN---SRRDYR----EMLFRAKDAMQYISSILLYEETL-YQ 74 D +A I A+HL + +N R E L +D ++ + YEE L Sbjct: 218 DLVDAVILTEKTALHLRARQNFKDLRGVAHRTGEEWLVTVQDTEAHVPDV--YEEVLGVV 275 Query: 75 NAQDGTS-----FVDLISSSGV--LVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121 +D + G L +V +G K + L PGE + G+ D+ V Sbjct: 276 PITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYV 329 >1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Score = 26.5 bits (58), Expect = 8.7 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 77 QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLD 117 +DG ++ IS++G + G KV++ L G+ ITVG+ Sbjct: 67 EDGNLLLNDISTNGTWLNGQKVEKN-SNQLLSQGDEITVGVG 107 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.133 0.381 Gapped Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,700,274 Number of extensions: 119829 Number of successful extensions: 351 Number of sequences better than 10.0: 1 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 22 Length of query: 339 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 246 Effective length of database: 3,438,538 Effective search space: 845880348 Effective search space used: 845880348 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.1 bits)