RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase
[Candidatus Liberibacter asiaticus str. psy62]
         (339 letters)



>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
           phosphoprotein, schiff base; HET: 13P; 1.70A
           {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
           1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
           3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A
           3dfp_A 3dfq_A ...
          Length = 341

 Score =  445 bits (1147), Expect = e-126
 Identities = 154/330 (46%), Positives = 206/330 (62%), Gaps = 3/330 (0%)

Query: 3   QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM-QY 61
           ++L +    ++  GKGILAADES  +I KR ++I  E+TE +RR YR++L  A D +   
Sbjct: 10  KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPC 69

Query: 62  ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
           I  ++L+ ETLYQ A DG  F  +I S G +VGIKVD+G+ P     GE  T GL  L  
Sbjct: 70  IGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSE 129

Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
           R  QYK  GA  AKWR VL + +  PS   +  N ++LARYA +CQ  G+VPIVEPE+L 
Sbjct: 130 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 189

Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGK-SAPQVSDEEIASNT 240
           +GDH ++RC  VTE VL  ++  L    +  EG +LK NM+ PG     + S EEIA  T
Sbjct: 190 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 249

Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299
           +   +R VP AV G+ FLSGGQSE++A+  L+A+N      PW L+FSYGRALQ S L+A
Sbjct: 250 VTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKA 309

Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCW 329
           W GK++N+  AQ     RA  NSLA +G +
Sbjct: 310 WGGKKENLKAAQEEYVKRALANSLACQGKY 339


>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
           seattle structural GE center for infectious disease,
           hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
          Length = 347

 Score =  413 bits (1062), Expect = e-116
 Identities = 188/341 (55%), Positives = 236/341 (69%), Gaps = 5/341 (1%)

Query: 1   MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM- 59
           M + LE+    ++ AGKGILAADES ATI KRF++I +E TE++RR YREMLF AK+AM 
Sbjct: 5   MNERLEDIALTLVGAGKGILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKEAME 64

Query: 60  QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL 119
             IS ++L++ETL Q A  G    DLI  +G + GIKVD G KP   +P E IT GLD L
Sbjct: 65  SAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITEGLDGL 124

Query: 120 DVRLKQYKDAGARVAKWRVVLSVSD-VLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
             RLK Y   GAR AKWR V+++    LP+   +  N   LARYA LCQ AGLVPIVEPE
Sbjct: 125 RERLKDYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVEPE 184

Query: 179 VLMEG---DHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEE 235
           VLM+G    H+I RC EVT+ VL T+F EL+  RV FEG++LK NM++ GK A   S EE
Sbjct: 185 VLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVIDGKDARIASVEE 244

Query: 236 IASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQES 295
           +A  T+ + K+ VP AV GIAFLSGGQ++++ATA LSAMN++G  PW+L+FSYGRALQ +
Sbjct: 245 VAEKTVHVLKQTVPAAVPGIAFLSGGQTDEEATAHLSAMNALGALPWKLTFSYGRALQAA 304

Query: 296 VLRAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
            L+AW GK +N+VVAQ+   HRA MN LA  G W K  E S
Sbjct: 305 ALKAWAGKNENIVVAQKAFCHRARMNHLAALGQWTKDQEKS 345


>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
           emerald biostructures, glycolysis, lyase, structural
           genomics; HET: CIT; 2.10A {Babesia bovis}
          Length = 379

 Score =  410 bits (1056), Expect = e-115
 Identities = 160/340 (47%), Positives = 207/340 (60%), Gaps = 3/340 (0%)

Query: 1   MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
             ++L  + + +   GKGILAADES  TIQKRF  + +E+TE +R +YR +LF  K   +
Sbjct: 30  RAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGK 89

Query: 61  YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
           YIS  +L+EETL+Q A +G + VDL+ + G+L GIKVD+GL   P    E  T GLD L 
Sbjct: 90  YISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLA 149

Query: 121 VRLKQYKDAGARVAKWRVVLSV--SDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
            R ++Y +AGAR AKWR VLS+      PS   +    H LARYA +CQ  GLVPIVEPE
Sbjct: 150 ERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPE 209

Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGK-SAPQVSDEEIA 237
           +L +GDH+IE CAEVTE VL  +F  L   +V  EG +LK NM+  G     + + + + 
Sbjct: 210 ILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVG 269

Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
             T +  +R VP A+ G+ FLSGGQSE  AT  L+ +N     PW LSFSYGRALQ SVL
Sbjct: 270 FLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVL 329

Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSN 337
           + WNG   N   AQ VL   A  NS A+ G  K  L +  
Sbjct: 330 KTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDG 369


>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base,
           structural genomics; 2.00A {Encephalitozoon cuniculi}
           PDB: 3mbf_A*
          Length = 342

 Score =  384 bits (987), Expect = e-107
 Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 5/333 (1%)

Query: 2   MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQY 61
           +  L  +   +L+ GKGILAADE+  T+ +RF+ + + +TE +RR +RE+LF  K   +Y
Sbjct: 11  LLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFSTKGIERY 70

Query: 62  ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
           I  ++L +ET  Q +  G    +L+   G+ +GIK+D+GL        E I+VGL+DLD+
Sbjct: 71  IGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLI--DYKEKEKISVGLEDLDL 128

Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
           R K      A  AKWR +    D +PS   +  N  ILA+YA++CQ  GLVPIVEPEV +
Sbjct: 129 RCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQKNGLVPIVEPEVFL 188

Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240
           EGD++++R  EVT  +L TL   L    V   G+++K++ +  G+ +  + + +++A+ T
Sbjct: 189 EGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSGQLSNEKYTPKKVATFT 248

Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299
           ++     +PC + GI FLSGG   +DA   L+A+N    C  W LSFS+ RAL + VL  
Sbjct: 249 LRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLET 308

Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKG-CWKK 331
           W G   N+  AQ++L   +       +G  W +
Sbjct: 309 WRGDDSNIEEAQKILLETSFKACRGAEGKLWDQ 341


>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail,
           lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB:
           2qdg_A* 2qdh_A* 1epx_A 1f2j_A
          Length = 391

 Score =  351 bits (902), Expect = 1e-97
 Identities = 139/337 (41%), Positives = 201/337 (59%), Gaps = 3/337 (0%)

Query: 3   QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62
            +L  +V  +   GKG+LAADES  +  KRF+ I L +TE  RR YR ++  A+   QYI
Sbjct: 43  SELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYI 102

Query: 63  SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKP-YPLYPGEHITVGLDDLDV 121
           S ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P      GE +T GLD    
Sbjct: 103 SGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVK 162

Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
           R   Y   G R  KWR V  + +   S + V+ N   LARYA+L Q +GLVPIVEPEV++
Sbjct: 163 RASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMI 222

Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240
           +G H I+ C  V+E V R +   L    V +EG +LK NM++PG  +    + E++A  T
Sbjct: 223 DGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYT 282

Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRA 299
           +    R +P  + G+ FLSGG SE  A+  L+A+N+     P+ LSFSY RALQ S L+A
Sbjct: 283 VMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKA 342

Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
           W GK+  +   +R   HRA MNS+A  G +K+S +++
Sbjct: 343 WGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDA 379


>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery,
           structural genomics, PSI, protein structure initiative;
           2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
          Length = 369

 Score =  342 bits (879), Expect = 6e-95
 Identities = 151/339 (44%), Positives = 210/339 (61%), Gaps = 3/339 (0%)

Query: 1   MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
           + ++L  +   ++QAGKGILAADES  TI+KRF  I LE+T  +R  YR++LF  K   +
Sbjct: 18  VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 77

Query: 61  YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
           +IS  +L+EETL+Q  + G   V+L+ +  ++ GIKVD+GL   P    E  T GLD L 
Sbjct: 78  FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 137

Query: 121 VRLKQYKDAGARVAKWR--VVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
            R K+Y  AGAR AKWR  +V+  +   P+   +      LARYA +CQ   LVPIVEPE
Sbjct: 138 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 197

Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIA 237
           +L +G H+IE CA VT+ VL  +F  L    V  EG +LK NM+  G      +  +++ 
Sbjct: 198 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 257

Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
             T++  +R VP A+ G+ FLSGGQSE++A+  L+++N++G  PW L+FSYGRALQ SVL
Sbjct: 258 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 317

Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
             W GK++NV  A+ VL  RA  NSLAT G +K      
Sbjct: 318 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGE 356


>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
           genomics, PSI-2, protein structure initiative; 2.46A
           {Porphyromonas gingivalis W83}
          Length = 296

 Score =  252 bits (646), Expect = 7e-68
 Identities = 54/305 (17%), Positives = 100/305 (32%), Gaps = 45/305 (14%)

Query: 10  AMMLQAGKGILAADESNATIQKRFKAIHLESTENS--------RRDYREMLFRAKDAM-Q 60
             M QA   + A D+S  +  K  KA  ++                 R  +  +      
Sbjct: 10  QQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFATG 69

Query: 61  YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
            I  ++L+E T+    +   +   L     ++  +KVD+GL+      G  +     +L 
Sbjct: 70  KIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQD--EANGVQLMKPFPELG 127

Query: 121 VRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL 180
              ++         K R V+       +   ++  +    ++     + GLVPI+EPEV 
Sbjct: 128 KLCEEAVGYHVFGTKMRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLVPILEPEVD 183

Query: 181 MEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNT 240
           +      +    +   +L  L           E ++LK  +                   
Sbjct: 184 IHCPEKAKAEEILKRELLAQL-------DKMTEPVMLKITIPTVDNFYK----------- 225

Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAW 300
               + +    +  +  LSGG S + A   LS           +  S+ RAL E  L A 
Sbjct: 226 ----EIIEHPMMLRVVALSGGYSREQANELLSR-------NHGVIASFSRALVEG-LSAR 273

Query: 301 NGKQD 305
               +
Sbjct: 274 QTDAE 278


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 69/393 (17%), Positives = 109/393 (27%), Gaps = 182/393 (46%)

Query: 1   MMQDLENSVAMMLQAGKGI--LAA---DESNATIQKR-------FKAIHLESTENSRRDY 48
            + + EN     L+ G  I  LAA    E++ T+ K          A  + +     +  
Sbjct: 87  CLTEFENCY---LE-GNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKS 141

Query: 49  REMLFRA---KDAMQYISSIL---------------LYEETLYQNAQDGTSFV-DLISSS 89
              LFRA    +A     +I                LY    Y         V DLI  S
Sbjct: 142 NSALFRAVGEGNAQLV--AIFGGQGNTDDYFEELRDLY--QTYH------VLVGDLIKFS 191

Query: 90  G-VLVGIKVD--RGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKW-----RV--- 138
              L  +        K +          GL+               + +W          
Sbjct: 192 AETLSELIRTTLDAEKVFTQ--------GLN---------------ILEWLENPSNTPDK 228

Query: 139 --VLS--VSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV--LMEG--DHT---- 186
             +LS  +S   P + V++     LA Y V  +  G  P    E+   ++G   H+    
Sbjct: 229 DYLLSIPIS--CPLIGVIQ-----LAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLV 278

Query: 187 ----IERCAEVT---EF------VLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD 233
               I   AE      F       +  LF         F G  ++     P  S P    
Sbjct: 279 TAVAI---AETDSWESFFVSVRKAITVLF---------FIG--VRCYEAYPNTSLP---- 320

Query: 234 EEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQ 293
                          P  ++         S ++     S M S+ +   +        +Q
Sbjct: 321 ---------------PSILE--------DSLENNEGVPSPMLSISNLT-Q------EQVQ 350

Query: 294 ESV----------------LRAWNGKQDNVVVA 310
           + V                L   NG   N+VV+
Sbjct: 351 DYVNKTNSHLPAGKQVEISLV--NG-AKNLVVS 380



 Score = 38.4 bits (89), Expect = 0.003
 Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 77/223 (34%)

Query: 6    ENSVAMMLQA---GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62
            EN  AM+ +    GK            +K FK I+  ST  + R  + +L     A Q+ 
Sbjct: 1686 ENYSAMIFETIVDGK---------LKTEKIFKEINEHSTSYTFRSEKGLL----SATQFT 1732

Query: 63   SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVR 122
               L    TL + A    +F DL S           +GL P                D  
Sbjct: 1733 QPAL----TLMEKA----AFEDLKS-----------KGLIP---------------ADAT 1758

Query: 123  LKQYKDAGARVAKWRVVLSVSDVLPSMTVVKA------NMHI------LAR--YAVLCQN 168
                  AG  + ++  + S++DV+   ++V+        M +      L R  Y ++  N
Sbjct: 1759 F-----AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813

Query: 169  AGLVPI-VEPEVLMEGDHTIERCAEVT----EFVLRTLFNELY 206
             G V      E L    + +ER  + T    E V   + N+ Y
Sbjct: 1814 PGRVAASFSQEAL---QYVVERVGKRTGWLVEIVNYNVENQQY 1853


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 16/42 (38%)

Query: 115 GLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANM 156
            L  L   LK Y D               D  P++  +KA M
Sbjct: 21  ALKKLQASLKLYAD---------------DSAPALA-IKATM 46



 Score = 28.4 bits (62), Expect = 2.2
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 12/34 (35%)

Query: 3  QDLENSVAMMLQAGKGILAADES------NATIQ 30
          Q L+      LQA    L AD+S       AT++
Sbjct: 20 QALKK-----LQASLK-LYADDSAPALAIKATME 47


>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
           phosphoprotein, transferase; NMR {Saccharomyces
           cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
           1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
          Length = 164

 Score = 31.1 bits (70), Expect = 0.42
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 78  DGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLD 117
           DG   ++ IS++G  +  +         L  G+ ITVG+ 
Sbjct: 96  DGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVG 135


>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
           splicing, transcription; NMR {Mus musculus}
          Length = 140

 Score = 30.4 bits (68), Expect = 0.55
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 71  TLYQNAQDGTSFV-DLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124
            L  +      F+ DL S+ G  +G       KP  +     ++ G       L+
Sbjct: 81  ALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLR 135


>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
           forkhead-associated domain (FHA) domain, PRE-mRNA
           retention and splicing; 2.40A {Saccharomyces cerevisiae}
           PDB: 2jkd_A
          Length = 205

 Score = 29.6 bits (66), Expect = 1.1
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 82  FVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115
            +DL SS+G  +  + +    +   L  G+ +T+ 
Sbjct: 157 VMDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLS 190


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 29.1 bits (65), Expect = 1.5
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 9/45 (20%)

Query: 186 TIERCAE----VTEFVLRTLFNELYTMRVCFE-GLVLKSNMILPG 225
            +  C E      + V R    ++    VC   GLVL   ++   
Sbjct: 20  IVLTCPECKVYPPKIVERFSEGDV----VCALCGLVLSDKLVDTR 60



 Score = 26.4 bits (58), Expect = 8.7
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 14/73 (19%)

Query: 123 LKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYA---VLCQNAGLVPIVEPEV 179
           +   +    R  +    L++    P   V      I+ R++   V+C   GLV  +    
Sbjct: 1   MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPK--IVERFSEGDVVCALCGLV--LS--- 53

Query: 180 LMEGDHTIERCAE 192
               D  ++  +E
Sbjct: 54  ----DKLVDTRSE 62


>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
           and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
           coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
          Length = 883

 Score = 28.5 bits (63), Expect = 2.4
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 137 RVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVT 194
              L + +    M   KA++ +   Y     +  L P+ + E+    +  I+    + 
Sbjct: 761 STRLGMLE----MVFAKADLWLAEYYDQRLVDKALWPLGK-ELRNLQEEDIKVVLAIA 813


>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
           forkhead-associated domain (FHA) domain, PRE-mRNA
           retention and splicing; 1.80A {Saccharomyces cerevisiae}
          Length = 158

 Score = 28.2 bits (62), Expect = 2.5
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 73  YQNAQDGTSF--VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115
           ++N +       +DL SS+G  +  + +    +   L  G+ +T+ 
Sbjct: 99  FRNVRGILKCYVMDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLS 143


>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics,
           PSI, protein structure initiative; 2.70A {Salmonella
           typhimurium} SCOP: c.1.10.1
          Length = 304

 Score = 27.7 bits (61), Expect = 3.8
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 226 KSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLS 285
           K    +  +   S+ +   +R+          LS G  E+     +      G       
Sbjct: 195 KVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGAS----G 250

Query: 286 FSYGRALQESVLRAWNGKQ 304
           F  GRA+  SV+   + + 
Sbjct: 251 FLAGRAVWSSVIGLPDTEL 269


>3gnf_B MVP, major vault protein; beta sheets, acetylation, cytoplasm,
           phosphoprotein, ribonucleoprotein, structural protein;
           2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A
          Length = 387

 Score = 26.7 bits (59), Expect = 7.5
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 23  DESNATIQKRFKAIHLESTEN---SRRDYR----EMLFRAKDAMQYISSILLYEETL-YQ 74
           D  +A I     A+HL + +N    R        E L   +D   ++  +  YEE L   
Sbjct: 218 DLVDAVILTEKTALHLRARQNFKDLRGVAHRTGEEWLVTVQDTEAHVPDV--YEEVLGVV 275

Query: 75  NAQDGTS-----FVDLISSSGV--LVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
                        +D +   G   L   +V +G K + L PGE +  G+ D+ V
Sbjct: 276 PITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYV 329


>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
           cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
           b.26.1.2
          Length = 127

 Score = 26.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 77  QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLD 117
           +DG   ++ IS++G  + G KV++      L  G+ ITVG+ 
Sbjct: 67  EDGNLLLNDISTNGTWLNGQKVEKN-SNQLLSQGDEITVGVG 107


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,700,274
Number of extensions: 119829
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 22
Length of query: 339
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 246
Effective length of database: 3,438,538
Effective search space: 845880348
Effective search space used: 845880348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)