RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase
[Candidatus Liberibacter asiaticus str. psy62]
(339 letters)
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
{Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
9986]}
Length = 363
Score = 344 bits (883), Expect = 7e-96
Identities = 156/339 (46%), Positives = 209/339 (61%), Gaps = 3/339 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM- 59
++L + ++ GKGILAADES +I KR ++I E+TE +RR YR++L A D +
Sbjct: 11 QKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVN 70
Query: 60 QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL 119
I ++L+ ETLYQ A DG F +I S G +VGIKVD+G+ P GE T GLD L
Sbjct: 71 PCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGL 130
Query: 120 DVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV 179
R QYK GA AKWR VL + + PS + N ++LARYA +CQ G+VPIVEPE+
Sbjct: 131 SERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEI 190
Query: 180 LMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIAS 238
L +GDH ++RC VTE VL ++ L + EG +LK NM+ PG + Q EEIA
Sbjct: 191 LPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAM 250
Query: 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVL 297
T+ +R VP AV G+ FLSGGQSE++A+ L+A+N PW L+FSYGRALQ S L
Sbjct: 251 ATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASAL 310
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
+AW GK++N+ AQ RA NSLA +G + S +
Sbjct: 311 KAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAG 349
>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase
{Plasmodium falciparum [TaxId: 5833]}
Length = 342
Score = 343 bits (880), Expect = 2e-95
Identities = 151/337 (44%), Positives = 210/337 (62%), Gaps = 3/337 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
+ ++L + ++QAGKGILAADES TI+KRF I LE+T +R YR++LF K +
Sbjct: 5 VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 64
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
+IS +L+EETL+Q + G V+L+ + ++ GIKVD+GL P E T GLD L
Sbjct: 65 FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 124
Query: 121 VRLKQYKDAGARVAKWR--VVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
R K+Y AGAR AKWR +V+ + P+ + LARYA +CQ LVPIVEPE
Sbjct: 125 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 184
Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIA 237
+L +G H+IE CA VT+ VL +F L V EG +LK NM+ G + +++
Sbjct: 185 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 244
Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
T++ +R VP A+ G+ FLSGGQSE++A+ L+++N++G PW L+FSYGRALQ SVL
Sbjct: 245 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 304
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLE 334
W GK++NV A+ VL RA NSLAT G +K
Sbjct: 305 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAG 341
>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 357
Score = 339 bits (871), Expect = 2e-94
Identities = 139/335 (41%), Positives = 200/335 (59%), Gaps = 3/335 (0%)
Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62
+L +V + GKG+LAADES + KRF+ I L +TE RR YR ++ A+ QYI
Sbjct: 23 SELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYI 82
Query: 63 SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKP-YPLYPGEHITVGLDDLDV 121
S ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P GE +T GLD
Sbjct: 83 SGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVK 142
Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
R Y G R KWR V + + S + V+ N LARYA+L Q +GLVPIVEPEV++
Sbjct: 143 RASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMI 202
Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIASNT 240
+G H I+ C V+E V R + L V +EG +LK NM++PG + + + E++A T
Sbjct: 203 DGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYT 262
Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299
+ R +P + G+ FLSGG SE A+ L+A+N+ P+ LSFSY RALQ S L+A
Sbjct: 263 VMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKA 322
Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLE 334
W GK+ + +R HRA MNS+A G +K+S +
Sbjct: 323 WGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDD 357
>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
(Homo sapiens), liver isozyme [TaxId: 9606]}
Length = 360
Score = 328 bits (842), Expect = 4e-91
Identities = 145/337 (43%), Positives = 192/337 (56%), Gaps = 3/337 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM- 59
++L ++ GKGILAADES T+ R + I +E+TE +RR +RE+LF ++
Sbjct: 11 QKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSIN 70
Query: 60 QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL 119
Q I ++L+ ETLYQ G F +++ G++VGIK+D+G P E GLD L
Sbjct: 71 QSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGL 130
Query: 120 DVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV 179
R QYK G KWR VL ++D PS ++ N + LARYA +CQ GLVPIVEPEV
Sbjct: 131 SERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANALARYASICQQNGLVPIVEPEV 190
Query: 180 LMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIAS 238
+ +GDH +E C VTE VL ++ L V EG +LK NM+ G + + E++A
Sbjct: 191 IPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAM 250
Query: 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVL 297
T+ R VP AV GI FLSGG SE+DAT L+A+N PW+LSFSYGRALQ S L
Sbjct: 251 ATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASAL 310
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLE 334
AW GK N Q RA N A KG + +
Sbjct: 311 AAWGGKAANKEATQEAFMKRAMANCQAAKGQYVHTGS 347
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 26.1 bits (57), Expect = 4.8
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 77 QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115
DL SS+G L+ +D L G+ I +G
Sbjct: 64 SGNWVIQDLGSSNGTLLNSNALDPE-TSVNLGDGDVIKLG 102
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
(Bacillus anthracis) [TaxId: 1392]}
Length = 722
Score = 25.6 bits (56), Expect = 5.3
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 218 KSNMILPGKSAPQVSDEEIASNTIKIF 244
S ++ P P + IA N F
Sbjct: 388 LSQILAPNNYYPSKNLAPIALNAQDDF 414
>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus
subtilis [TaxId: 1423]}
Length = 234
Score = 25.7 bits (55), Expect = 6.0
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 112 ITVGLDDLDV---RLKQYKDAGARVAKWRV 138
TV ++ + + Y G + K +V
Sbjct: 9 YTVSVNSPEEMAADAENYLKQGFQTLKIKV 38
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 25.1 bits (54), Expect = 8.4
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 149 MTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVT 194
M KA++ + Y + L P+ + E+ + I+ +
Sbjct: 766 MVFAKADLWLAEYYDQRLVDKALWPLGK-ELRNLQEEDIKVVLAIA 810
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,163,739
Number of extensions: 51175
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 13
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)