RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase
[Candidatus Liberibacter asiaticus str. psy62]
         (400 letters)



>gnl|CDD|178841 PRK00073, pgk, phosphoglycerate kinase; Provisional.
          Length = 389

 Score =  520 bits (1343), Expect = e-148
 Identities = 187/394 (47%), Positives = 263/394 (66%), Gaps = 8/394 (2%)

Query: 5   RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64
           +T++DL D++G R L+RVD+NVP  DGK+ D TRI   +PTI  L+EK AKV++ SHLGR
Sbjct: 2   KTLDDL-DLKGKRVLVRVDFNVPVKDGKITDDTRIRAALPTIKYLLEKGAKVILLSHLGR 60

Query: 65  PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124
           P+ + D + SL  V      +L K + FV+DCIG    ++IA+L +G ++L ENVRF   
Sbjct: 61  PKGE-DPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKG 119

Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKELSMLESC 183
           EE+NDP+  + L+  GD ++NDAF  +HRAHAS  G++  L P+  G  M+KEL  L   
Sbjct: 120 EEKNDPELAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFLKPAAAGFLMEKELEALGKA 179

Query: 184 FSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD 243
               ++P VAI+GG+KVS KI +L NL++KVDKL+IGGGMAN+FL AQG  VG+SL + D
Sbjct: 180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEED 239

Query: 244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE 303
             D   ++  +AK    +I +P DVVVA+E        VVS   +P D +ILD+G KT+E
Sbjct: 240 LIDTAKELLEKAKEKGVKIPLPVDVVVAKEFSDA-EATVVSVDEIPDDWMILDIGPKTIE 298

Query: 304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALA 363
              ++I  A+T++WNGP+GVFE E F + T  VA  +A+ T      SI GGGDT  A+ 
Sbjct: 299 LFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST----AFSIIGGGDTAAAVE 354

Query: 364 HAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
             G++++F+++ST GGA LE+LEGK+LPG+ AL 
Sbjct: 355 KLGLADKFSHISTGGGASLEFLEGKELPGVAALE 388


>gnl|CDD|184422 PRK13962, PRK13962, bifunctional phosphoglycerate
           kinase/triosephosphate isomerase; Provisional.
          Length = 645

 Score =  388 bits (999), Expect = e-108
 Identities = 169/395 (42%), Positives = 254/395 (64%), Gaps = 6/395 (1%)

Query: 5   RTMNDLRDIRGLRCLLRVDWNVPF-IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63
           +T+ D+ D++G R ++RVD+NVP   +G + D TRI   +PTI  L++  AKV++ SHLG
Sbjct: 4   KTIRDI-DVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILVSHLG 62

Query: 64  RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123
           RP+ + D   S+  V      +L K ++F  D IG    +++A L EG ++L ENVRF+ 
Sbjct: 63  RPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVRFHK 122

Query: 124 EEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESC 183
           EE +NDP+F + L+   D Y+NDAF  +HRAHAS  G++  LP+  G  M+KE+  L   
Sbjct: 123 EETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAEYLPAVAGFLMEKEIEFLGKA 182

Query: 184 FSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD 243
            +  ++P VAI+GG+KVS KI ++ NL++KVDKL+IGGGMA +FL A+G  VG+SL + D
Sbjct: 183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEED 242

Query: 244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE 303
             D   ++  +A+    ++++P D VVA+E K     +VV + ++P D + LD+G +T+E
Sbjct: 243 KLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIE 302

Query: 304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALA 363
              + IA A+T++WNGP+GVFE + F   T  VA  VA    E   I+I GGGD+  A+ 
Sbjct: 303 LFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVA----ESGAITIIGGGDSAAAVE 358

Query: 364 HAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG 398
             G +++ +++ST GGA LE+LEGK LPGI  L  
Sbjct: 359 KLGFADKMSHISTGGGASLEFLEGKVLPGIACLLD 393


>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
          Length = 417

 Score =  333 bits (855), Expect = 6e-92
 Identities = 162/406 (39%), Positives = 246/406 (60%), Gaps = 20/406 (4%)

Query: 10  LRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSK 68
              ++G R L+RVD+NVP  +G + D TRI+  +PTI  L+E+ AK VV+ SHLGRP  +
Sbjct: 12  DDQLKGKRVLIRVDFNVPIKEGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGR 71

Query: 69  SDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE-- 126
             +  SL  VV   E +L K + F+NDC+G  + ++ A+   G +IL EN+RF+ EEE  
Sbjct: 72  RVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGK 131

Query: 127 ---------RNDPD----FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAM 173
                    + D +    F + L++ GD Y+NDAF  +HRAH+S+ G+   +    G  M
Sbjct: 132 GVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAHRAHSSMVGVDLPVKV-AGFLM 190

Query: 174 QKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQG 232
           +KEL          ++P +AI+GG+KV+ KI L+ NL+ KVD+++IGGGMA +F  V   
Sbjct: 191 KKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDN 250

Query: 233 MGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS-AQSVPLD 291
           M +G+SL   + +  V +I  +AK    +I +P D V A +      T+VV+  + +P  
Sbjct: 251 MPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDG 310

Query: 292 SIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIIS 351
            + LD G K++E   + I +A+T++WNGP GVFE+  F + ++ +   V K T E+  I+
Sbjct: 311 WMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVVKAT-EKGAIT 369

Query: 352 IAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
           I GGGDT + +   G +N+ ++VST GGA LE LEGK+LPG+VALS
Sbjct: 370 IVGGGDTASLVEKTGAANKVSHVSTGGGASLELLEGKELPGVVALS 415


>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
          Length = 401

 Score =  323 bits (830), Expect = 4e-89
 Identities = 169/400 (42%), Positives = 251/400 (62%), Gaps = 6/400 (1%)

Query: 1   MSRLRTMNDLR--DIRGLRCLLRVDWNVPFIDG-KVADVTRIERVVPTILELVEKKAKVV 57
           M+  R++  L+  D++G R  +RVD NVP  D   + D TRI   VPTI  L+   A+V+
Sbjct: 1   MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVI 60

Query: 58  IFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAE 117
           + SHLGRP+  + K  SL  +V     +L   ++  NDCIG  + + +A L EGG++L E
Sbjct: 61  LCSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLE 119

Query: 118 NVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKE 176
           NVRFY EEE+NDP+F + L+   D Y+NDAF  +HRAHAS  G++  L PS  G  MQKE
Sbjct: 120 NVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKE 179

Query: 177 LSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVG 236
           L  L    +  KKP  AIVGGSKVSTKI ++ +L++KVD L++GGGM  +F  AQG  VG
Sbjct: 180 LDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVG 239

Query: 237 RSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILD 296
            SL + D  D    +  +AK     +++P DVV+A +      ++VV A ++P   + LD
Sbjct: 240 SSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLD 299

Query: 297 VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGG 356
           +G  +++   + +   +T++WNGP+GVFE E F   T  +A  +A+L+  + + +I GGG
Sbjct: 300 IGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELS-GKGVTTIIGGG 358

Query: 357 DTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVAL 396
           D++ A+   G++++ +++ST GGA LE LEGK LPG++AL
Sbjct: 359 DSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLAL 398


>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
          Length = 481

 Score =  316 bits (810), Expect = 9e-87
 Identities = 162/387 (41%), Positives = 244/387 (63%), Gaps = 4/387 (1%)

Query: 12  DIRGLRCLLRVDWNVPFIDG-KVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSD 70
           D++G +  +R D NVP  D   + D TRI   +PTI  L+   AKV++ SHLGRP+  + 
Sbjct: 89  DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTP 148

Query: 71  KDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDP 130
           K  SL  +V     +L   ++  +DCIG  + + +ASL EGG++L ENVRFY EEE+N+P
Sbjct: 149 K-FSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEP 207

Query: 131 DFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKELSMLESCFSESKK 189
           +F + L+   D Y+NDAF  +HRAHAS  G++  L PS  G  +QKEL  L    S  K+
Sbjct: 208 EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKR 267

Query: 190 PLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVH 249
           P  AIVGGSKVS+KI ++ +L++K D L++GGGM  +F  AQG+ VG SL + D  +   
Sbjct: 268 PFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELAT 327

Query: 250 QIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVI 309
            +  +AK     +++P DVV+A +      +++V A ++P   + LD+G  +V+   + +
Sbjct: 328 SLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEAL 387

Query: 310 AQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISN 369
              +TV+WNGP+GVFE E F   T  VA  +A+L+  + + +I GGGD++ A+   G+++
Sbjct: 388 DTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAELS-GKGVTTIIGGGDSVAAVEKVGVAD 446

Query: 370 EFTYVSTAGGAFLEWLEGKDLPGIVAL 396
             +++ST GGA LE LEGK+LPG+VAL
Sbjct: 447 VMSHISTGGGASLELLEGKELPGVVAL 473


>gnl|CDD|181839 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide
           2'-phosphodiesterase/3'-nucleotidase precursor protein;
           Reviewed.
          Length = 1163

 Score = 32.9 bits (75), Expect = 0.15
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 353 AGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399
            GG D I ALAH+GI +E+         +    + K +  IV  +GH
Sbjct: 232 KGGADVIVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIV--AGH 276


>gnl|CDD|130457 TIGR01390, CycNucDiestase, 2',3'-cyclic-nucleotide
           2'-phosphodiesterase.  2',3'-cyclic-nucleotide
           2'-phosphodiesterase is a bifunctional enzyme localized
           to the periplasm of Gram-negative bacteria.
           2',3'-cyclic-nucleotide 2'-phosphodiesters are
           intermediates formed during the hydrolysis of RNA by the
           ribonuclease I, which is also found to the periplasm,
           and other enzymes of the RNAse T2 family. Bacteria are
           unable to transport 2',3'-cyclic-nucleotides into the
           cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           contains 2 active sites which catalyze the reactions
           that convert the 2',3'-cyclic-nucleotide into a
           3'-nucleotide, which is then converted into nucleic acid
           and phosphate. Both final products can be transported
           into the cytoplasm. Thus, it has been suggested that
           2',3'-cyclic-nucleotide 2'-phosphodiesterase has a
           'scavenging' function. Experimental evidence indicates
           that 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP
           as a sole source of carbon and energy (PubMed:11160814).
          Length = 626

 Score = 30.6 bits (69), Expect = 0.66
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 333 TVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPG 392
           T ++     K   E +    A G D I ALAH+GIS +         A+        +PG
Sbjct: 177 TADIVDTARKYVPEMK----AKGADIIVALAHSGISADPYQPGAENSAY----YLTKVPG 228

Query: 393 I-VALSGH 399
           I   L GH
Sbjct: 229 IDAVLFGH 236


>gnl|CDD|149634 pfam08645, PNK3P, Polynucleotide kinase 3 phosphatase.
          Polynucleotide kinase 3 phosphatases play a role in the
          repair of single breaks in DNA induced by DNA-damaging
          agents such as gamma radiation and camptothecin.
          Length = 158

 Score = 30.7 bits (70), Expect = 0.68
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 40 ERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLF--KVVSIAESI 85
            V   + +L E   K+VIF++ G   +K  K    F  K+ +I + +
Sbjct: 32 PSVPEKLKKLHEDGYKIVIFTNQGGIGTKGKKSAESFKNKIEAILKKL 79


>gnl|CDD|149760 pfam08801, Nucleoporin_N, Nup133 N terminal like.  Nup133 is a
           nucleoporin that is crucial for nuclear pore complex
           (NPC) biogenesis. The N terminal forms a seven-bladed
           beta propeller structure. This family now contains other
           sized nucleoporins, including Nup155, Nup8, Nuo132,
           Nup15 and Nup170.
          Length = 421

 Score = 29.0 bits (65), Expect = 2.3
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 67  SKSDKDCSLFK-VVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEE 125
           SK  K       + SI      +    V+  + S+  + + +L+  G I   ++     +
Sbjct: 178 SKCSKIGLTKSGLFSIRSPSSKRESEIVSLRVDSSRGRLLYTLTSKGTIRVWDLSNSGSK 237

Query: 126 ERNDPDFVRMLSRNGDFYINDAFSVS 151
             +  D   ++ R+    I  A S S
Sbjct: 238 LVSKVDIYEIILRDLQSGIPKAASTS 263


>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit;
           Reviewed.
          Length = 1068

 Score = 28.8 bits (65), Expect = 2.4
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 24/83 (28%)

Query: 28  FIDGKVADVTRI----ERVVPTILELVEKKAKVVIFSHLG------RPQSKSDKDCSLFK 77
           FIDGK  +V  I    +  +P I+E +E+        H G       PQS S++     K
Sbjct: 749 FIDGKEYEVDAISDGEDVTIPGIIEHIEQAG-----VHSGDSIAVLPPQSLSEEQQE--K 801

Query: 78  VVSIAESILHK-------NILFV 93
           +   A  I  K       NI FV
Sbjct: 802 IRDYAIKIAKKLGFRGIMNIQFV 824


>gnl|CDD|180456 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
          Length = 258

 Score = 28.4 bits (64), Expect = 3.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 160 GLSHLLPSYIGRAMQKELSM 179
           GLS  LP  +G    + +S+
Sbjct: 141 GLSVRLPQKVGIGRARRMSL 160


>gnl|CDD|179284 PRK01355, PRK01355, azoreductase; Reviewed.
          Length = 199

 Score = 28.5 bits (64), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 207 LINLVKKVDKLVIGGGMAN 225
            IN +K VDK+VI   M N
Sbjct: 71  YINQLKSVDKVVISCPMTN 89


>gnl|CDD|181600 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 560

 Score = 28.1 bits (63), Expect = 4.4
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 18/66 (27%)

Query: 172 AMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLIN--LVKKVD----KLVIGGGMAN 225
              KEL          K P  AI G   V+T    L+N    +++D    KL +GGGMA 
Sbjct: 290 GFVKELK---------KYPFTAITG---VNTLFNALLNNEEFQELDFSSLKLSVGGGMAV 337

Query: 226 SFLVAQ 231
              VA+
Sbjct: 338 QQAVAE 343


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,450,527
Number of extensions: 417542
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 20
Length of query: 400
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 305
Effective length of database: 3,941,713
Effective search space: 1202222465
Effective search space used: 1202222465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)