RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str. psy62] (400 letters) >gnl|CDD|178841 PRK00073, pgk, phosphoglycerate kinase; Provisional. Length = 389 Score = 520 bits (1343), Expect = e-148 Identities = 187/394 (47%), Positives = 263/394 (66%), Gaps = 8/394 (2%) Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64 +T++DL D++G R L+RVD+NVP DGK+ D TRI +PTI L+EK AKV++ SHLGR Sbjct: 2 KTLDDL-DLKGKRVLVRVDFNVPVKDGKITDDTRIRAALPTIKYLLEKGAKVILLSHLGR 60 Query: 65 PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124 P+ + D + SL V +L K + FV+DCIG ++IA+L +G ++L ENVRF Sbjct: 61 PKGE-DPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKG 119 Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKELSMLESC 183 EE+NDP+ + L+ GD ++NDAF +HRAHAS G++ L P+ G M+KEL L Sbjct: 120 EEKNDPELAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFLKPAAAGFLMEKELEALGKA 179 Query: 184 FSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD 243 ++P VAI+GG+KVS KI +L NL++KVDKL+IGGGMAN+FL AQG VG+SL + D Sbjct: 180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEED 239 Query: 244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE 303 D ++ +AK +I +P DVVVA+E VVS +P D +ILD+G KT+E Sbjct: 240 LIDTAKELLEKAKEKGVKIPLPVDVVVAKEFSDA-EATVVSVDEIPDDWMILDIGPKTIE 298 Query: 304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALA 363 ++I A+T++WNGP+GVFE E F + T VA +A+ T SI GGGDT A+ Sbjct: 299 LFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST----AFSIIGGGDTAAAVE 354 Query: 364 HAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 G++++F+++ST GGA LE+LEGK+LPG+ AL Sbjct: 355 KLGLADKFSHISTGGGASLEFLEGKELPGVAALE 388 >gnl|CDD|184422 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional. Length = 645 Score = 388 bits (999), Expect = e-108 Identities = 169/395 (42%), Positives = 254/395 (64%), Gaps = 6/395 (1%) Query: 5 RTMNDLRDIRGLRCLLRVDWNVPF-IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63 +T+ D+ D++G R ++RVD+NVP +G + D TRI +PTI L++ AKV++ SHLG Sbjct: 4 KTIRDI-DVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILVSHLG 62 Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123 RP+ + D S+ V +L K ++F D IG +++A L EG ++L ENVRF+ Sbjct: 63 RPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVRFHK 122 Query: 124 EEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESC 183 EE +NDP+F + L+ D Y+NDAF +HRAHAS G++ LP+ G M+KE+ L Sbjct: 123 EETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAEYLPAVAGFLMEKEIEFLGKA 182 Query: 184 FSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD 243 + ++P VAI+GG+KVS KI ++ NL++KVDKL+IGGGMA +FL A+G VG+SL + D Sbjct: 183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEED 242 Query: 244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE 303 D ++ +A+ ++++P D VVA+E K +VV + ++P D + LD+G +T+E Sbjct: 243 KLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIE 302 Query: 304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALA 363 + IA A+T++WNGP+GVFE + F T VA VA E I+I GGGD+ A+ Sbjct: 303 LFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVA----ESGAITIIGGGDSAAAVE 358 Query: 364 HAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG 398 G +++ +++ST GGA LE+LEGK LPGI L Sbjct: 359 KLGFADKMSHISTGGGASLEFLEGKVLPGIACLLD 393 >gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional. Length = 417 Score = 333 bits (855), Expect = 6e-92 Identities = 162/406 (39%), Positives = 246/406 (60%), Gaps = 20/406 (4%) Query: 10 LRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSK 68 ++G R L+RVD+NVP +G + D TRI+ +PTI L+E+ AK VV+ SHLGRP + Sbjct: 12 DDQLKGKRVLIRVDFNVPIKEGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGR 71 Query: 69 SDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE-- 126 + SL VV E +L K + F+NDC+G + ++ A+ G +IL EN+RF+ EEE Sbjct: 72 RVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGK 131 Query: 127 ---------RNDPD----FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAM 173 + D + F + L++ GD Y+NDAF +HRAH+S+ G+ + G M Sbjct: 132 GVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAHRAHSSMVGVDLPVKV-AGFLM 190 Query: 174 QKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQG 232 +KEL ++P +AI+GG+KV+ KI L+ NL+ KVD+++IGGGMA +F V Sbjct: 191 KKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDN 250 Query: 233 MGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS-AQSVPLD 291 M +G+SL + + V +I +AK +I +P D V A + T+VV+ + +P Sbjct: 251 MPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDG 310 Query: 292 SIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIIS 351 + LD G K++E + I +A+T++WNGP GVFE+ F + ++ + V K T E+ I+ Sbjct: 311 WMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVVKAT-EKGAIT 369 Query: 352 IAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 I GGGDT + + G +N+ ++VST GGA LE LEGK+LPG+VALS Sbjct: 370 IVGGGDTASLVEKTGAANKVSHVSTGGGASLELLEGKELPGVVALS 415 >gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase. Length = 401 Score = 323 bits (830), Expect = 4e-89 Identities = 169/400 (42%), Positives = 251/400 (62%), Gaps = 6/400 (1%) Query: 1 MSRLRTMNDLR--DIRGLRCLLRVDWNVPFIDG-KVADVTRIERVVPTILELVEKKAKVV 57 M+ R++ L+ D++G R +RVD NVP D + D TRI VPTI L+ A+V+ Sbjct: 1 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVI 60 Query: 58 IFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAE 117 + SHLGRP+ + K SL +V +L ++ NDCIG + + +A L EGG++L E Sbjct: 61 LCSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLE 119 Query: 118 NVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKE 176 NVRFY EEE+NDP+F + L+ D Y+NDAF +HRAHAS G++ L PS G MQKE Sbjct: 120 NVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKE 179 Query: 177 LSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVG 236 L L + KKP AIVGGSKVSTKI ++ +L++KVD L++GGGM +F AQG VG Sbjct: 180 LDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVG 239 Query: 237 RSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILD 296 SL + D D + +AK +++P DVV+A + ++VV A ++P + LD Sbjct: 240 SSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLD 299 Query: 297 VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGG 356 +G +++ + + +T++WNGP+GVFE E F T +A +A+L+ + + +I GGG Sbjct: 300 IGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELS-GKGVTTIIGGG 358 Query: 357 DTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVAL 396 D++ A+ G++++ +++ST GGA LE LEGK LPG++AL Sbjct: 359 DSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLAL 398 >gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional. Length = 481 Score = 316 bits (810), Expect = 9e-87 Identities = 162/387 (41%), Positives = 244/387 (63%), Gaps = 4/387 (1%) Query: 12 DIRGLRCLLRVDWNVPFIDG-KVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSD 70 D++G + +R D NVP D + D TRI +PTI L+ AKV++ SHLGRP+ + Sbjct: 89 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTP 148 Query: 71 KDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDP 130 K SL +V +L ++ +DCIG + + +ASL EGG++L ENVRFY EEE+N+P Sbjct: 149 K-FSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEP 207 Query: 131 DFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKELSMLESCFSESKK 189 +F + L+ D Y+NDAF +HRAHAS G++ L PS G +QKEL L S K+ Sbjct: 208 EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKR 267 Query: 190 PLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVH 249 P AIVGGSKVS+KI ++ +L++K D L++GGGM +F AQG+ VG SL + D + Sbjct: 268 PFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELAT 327 Query: 250 QIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVI 309 + +AK +++P DVV+A + +++V A ++P + LD+G +V+ + + Sbjct: 328 SLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEAL 387 Query: 310 AQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISN 369 +TV+WNGP+GVFE E F T VA +A+L+ + + +I GGGD++ A+ G+++ Sbjct: 388 DTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAELS-GKGVTTIIGGGDSVAAVEKVGVAD 446 Query: 370 EFTYVSTAGGAFLEWLEGKDLPGIVAL 396 +++ST GGA LE LEGK+LPG+VAL Sbjct: 447 VMSHISTGGGASLELLEGKELPGVVAL 473 >gnl|CDD|181839 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed. Length = 1163 Score = 32.9 bits (75), Expect = 0.15 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 353 AGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 GG D I ALAH+GI +E+ + + K + IV +GH Sbjct: 232 KGGADVIVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIV--AGH 276 >gnl|CDD|130457 TIGR01390, CycNucDiestase, 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a sole source of carbon and energy (PubMed:11160814). Length = 626 Score = 30.6 bits (69), Expect = 0.66 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 333 TVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPG 392 T ++ K E + A G D I ALAH+GIS + A+ +PG Sbjct: 177 TADIVDTARKYVPEMK----AKGADIIVALAHSGISADPYQPGAENSAY----YLTKVPG 228 Query: 393 I-VALSGH 399 I L GH Sbjct: 229 IDAVLFGH 236 >gnl|CDD|149634 pfam08645, PNK3P, Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin. Length = 158 Score = 30.7 bits (70), Expect = 0.68 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 40 ERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLF--KVVSIAESI 85 V + +L E K+VIF++ G +K K F K+ +I + + Sbjct: 32 PSVPEKLKKLHEDGYKIVIFTNQGGIGTKGKKSAESFKNKIEAILKKL 79 >gnl|CDD|149760 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) biogenesis. The N terminal forms a seven-bladed beta propeller structure. This family now contains other sized nucleoporins, including Nup155, Nup8, Nuo132, Nup15 and Nup170. Length = 421 Score = 29.0 bits (65), Expect = 2.3 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%) Query: 67 SKSDKDCSLFK-VVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEE 125 SK K + SI + V+ + S+ + + +L+ G I ++ + Sbjct: 178 SKCSKIGLTKSGLFSIRSPSSKRESEIVSLRVDSSRGRLLYTLTSKGTIRVWDLSNSGSK 237 Query: 126 ERNDPDFVRMLSRNGDFYINDAFSVS 151 + D ++ R+ I A S S Sbjct: 238 LVSKVDIYEIILRDLQSGIPKAASTS 263 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 28.8 bits (65), Expect = 2.4 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 24/83 (28%) Query: 28 FIDGKVADVTRI----ERVVPTILELVEKKAKVVIFSHLG------RPQSKSDKDCSLFK 77 FIDGK +V I + +P I+E +E+ H G PQS S++ K Sbjct: 749 FIDGKEYEVDAISDGEDVTIPGIIEHIEQAG-----VHSGDSIAVLPPQSLSEEQQE--K 801 Query: 78 VVSIAESILHK-------NILFV 93 + A I K NI FV Sbjct: 802 IRDYAIKIAKKLGFRGIMNIQFV 824 >gnl|CDD|180456 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional. Length = 258 Score = 28.4 bits (64), Expect = 3.4 Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 160 GLSHLLPSYIGRAMQKELSM 179 GLS LP +G + +S+ Sbjct: 141 GLSVRLPQKVGIGRARRMSL 160 >gnl|CDD|179284 PRK01355, PRK01355, azoreductase; Reviewed. Length = 199 Score = 28.5 bits (64), Expect = 3.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 207 LINLVKKVDKLVIGGGMAN 225 IN +K VDK+VI M N Sbjct: 71 YINQLKSVDKVVISCPMTN 89 >gnl|CDD|181600 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated. Length = 560 Score = 28.1 bits (63), Expect = 4.4 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 18/66 (27%) Query: 172 AMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLIN--LVKKVD----KLVIGGGMAN 225 KEL K P AI G V+T L+N +++D KL +GGGMA Sbjct: 290 GFVKELK---------KYPFTAITG---VNTLFNALLNNEEFQELDFSSLKLSVGGGMAV 337 Query: 226 SFLVAQ 231 VA+ Sbjct: 338 QQAVAE 343 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0610 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,450,527 Number of extensions: 417542 Number of successful extensions: 920 Number of sequences better than 10.0: 1 Number of HSP's gapped: 900 Number of HSP's successfully gapped: 20 Length of query: 400 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 305 Effective length of database: 3,941,713 Effective search space: 1202222465 Effective search space used: 1202222465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.4 bits)