RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase
[Candidatus Liberibacter asiaticus str. psy62]
(400 letters)
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} (A:204-415)
Length = 212
Score = 241 bits (617), Expect = 1e-64
Identities = 85/209 (40%), Positives = 130/209 (62%)
Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNV 248
+PLVAIVGG+KVS KI LL N+++++D L+IGG MA +FL AQG +G+S C+ +
Sbjct: 2 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 61
Query: 249 HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQV 308
+ +A+ ++I+P D V E K + Q++P + LD+G KT+E Q
Sbjct: 62 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 121
Query: 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGIS 368
I + ++ +WNGP+GVFE+ P+ + T +A + + T E ++SI GGGD+ +A +G +
Sbjct: 122 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 181
Query: 369 NEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
++VST GGA LE LEGK LPG+ L
Sbjct: 182 KRMSHVSTGGGASLELLEGKTLPGVTVLD 210
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} (A:183-398)
Length = 216
Score = 232 bits (593), Expect = 6e-62
Identities = 89/211 (42%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDN 247
+KP V ++GG+KVS KI ++ NL++K D+++IGG M +FL A G VG S + D D
Sbjct: 3 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 62
Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSA-QSVPLDSIILDVGFKTVEYIK 306
++ +AK EI++P D V+A++++ G+ +VV +P + LD+G +T+E K
Sbjct: 63 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 122
Query: 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAG 366
Q ++ A+TV+WNGP+GVFEI+ F T +VA +A LT++ I++ GGGD+ A+ G
Sbjct: 123 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFG 181
Query: 367 ISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
+ ++F++VST GGA LE+LEGK+LPGI ++
Sbjct: 182 LEDKFSHVSTGGGASLEFLEGKELPGIASMR 212
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} (A:186-394)
Length = 209
Score = 232 bits (592), Expect = 7e-62
Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 3/209 (1%)
Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNV 248
+P AI+GG+KV KI ++ NL++KVD L+IGGG+A +F+ A G VG+SL + D +
Sbjct: 2 RPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELA 61
Query: 249 HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQV 308
+AK +P DVVVA T+VV ++P D LD+G KT E + V
Sbjct: 62 KSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDV 121
Query: 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGIS 368
I +++ V+WNGP+GVFE++ F T +A +A+ S+ GGGD+ A+ G++
Sbjct: 122 IRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALDTY---SVIGGGDSAAAVEKFGLA 178
Query: 369 NEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
++ ++ST GGA LE++EGK LPG+VAL
Sbjct: 179 DKMDHISTGGGASLEFMEGKQLPGVVALE 207
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase,
glycolysis, mutant, permutation, permuted sequence,
protein folding; 2.30A {Saccharomyces cerevisiae}
(A:132-346)
Length = 215
Score = 226 bits (577), Expect = 4e-60
Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 3/211 (1%)
Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRSLCQRDFSDN 247
+P +AI+GG+KV+ KI L+ NL+ KVD ++IGGGMA +F V + +G S+ + ++
Sbjct: 1 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 60
Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV-SAQSVPLDSIILDVGFKTVEYIK 306
V ++ +AK E+++P D ++A T+ V + +P LD G ++ +
Sbjct: 61 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 120
Query: 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAG 366
+A+A+T++WNGP GVFE E F T + V K + I GGGDT T G
Sbjct: 121 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYG 179
Query: 367 ISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
++++ ++VST GGA LE LEGK+LPG+ LS
Sbjct: 180 VTDKISHVSTGGGASLELLEGKELPGVAFLS 210
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} (A:202-415)
Length = 214
Score = 225 bits (575), Expect = 7e-60
Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 3/211 (1%)
Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRSLCQRDFSDN 247
+P +AI+GG+KV+ KI L+ NL+ KVD ++IGGGMA +F V + +G S+ + ++
Sbjct: 2 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 61
Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV-SAQSVPLDSIILDVGFKTVEYIK 306
V ++ +AK E+++P D ++A T+ V + +P LD G ++ +
Sbjct: 62 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 121
Query: 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAG 366
+A+A+T++WNGP GVFE E F T + V K + I GGGDT T G
Sbjct: 122 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYG 180
Query: 367 ISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
++++ ++VST GGA LE LEGK+LPG+ LS
Sbjct: 181 VTDKISHVSTGGGASLELLEGKELPGVAFLS 211
>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary
complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa}
(A:201-413)
Length = 213
Score = 222 bits (567), Expect = 5e-59
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 3/212 (1%)
Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRSLCQRDFSD 246
++P +AI+GG+KV+ KI L+ N++ KV++++IGGGMA +FL V M +G SL
Sbjct: 1 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 60
Query: 247 NVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS-AQSVPLDSIILDVGFKTVEYI 305
V + +A + +I +P D V A + + A +P + LD G K+
Sbjct: 61 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 120
Query: 306 KQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365
+ +A+A+ ++WNGP+GVFE E F + T + V K T I+I GGGDT T A
Sbjct: 121 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKW 179
Query: 366 GISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
+ ++VST GGA LE LEGK LPG+ ALS
Sbjct: 180 NTEDNVSHVSTGGGASLELLEGKVLPGVDALS 211
>1v6s_A Phosphoglycerate kinase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 1.50A {Thermus thermophilus}
(A:181-380)
Length = 200
Score = 221 bits (564), Expect = 1e-58
Identities = 80/199 (40%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDN 247
++P ++GG+KVS KI ++ +L+ ++D+L+IGG MA +FL A G VGRSL + D D
Sbjct: 3 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 62
Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQ 307
+ A+ + +P DVV A ++ G+ T+V A+++P+ + LD+G KT E +
Sbjct: 63 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 122
Query: 308 VIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGI 367
+ ARTV WNGP+GVFE+ PFD T+ V +A L ++ GGGD++ A+ G+
Sbjct: 123 ALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALEG---AFTVVGGGDSVAAVNRLGL 179
Query: 368 SNEFTYVSTAGGAFLEWLE 386
F +VST GGA LE+LE
Sbjct: 180 KERFGHVSTGGGASLEFLE 198
>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open
conformation, ADP complex, selenomethionine,
transferase; HET: AMP; 3.00A {Plasmodium falciparum}
(A:212-425)
Length = 214
Score = 220 bits (561), Expect = 3e-58
Identities = 88/212 (41%), Positives = 129/212 (60%), Gaps = 3/212 (1%)
Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVA-QGMGVGRSLCQRDFSD 246
++PL+AI+GG+KVS KI L+ NL+ KVD+ +IGGG A +F +G SL S
Sbjct: 2 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 61
Query: 247 NVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS-AQSVPLDSIILDVGFKTVEYI 305
V +I +AK +I +P D +A T+ V+ + +P + LD G K++E
Sbjct: 62 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 121
Query: 306 KQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365
K VI ++TV+WNGP GVFE F + ++E + V ++TK+ I+I GGGDT + +
Sbjct: 122 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 180
Query: 366 GISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
NE ++VST GGA LE LEGK+LPG++ALS
Sbjct: 181 NKKNEISHVSTGGGASLELLEGKELPGVLALS 212
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli} (A:182-373)
Length = 192
Score = 216 bits (551), Expect = 5e-57
Identities = 89/200 (44%), Positives = 129/200 (64%), Gaps = 9/200 (4%)
Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNV 248
+P+VAIVGGSKVSTK+T+L +L K D+L++GGG+AN+F+ AQG VG+SL + D D
Sbjct: 2 RPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEA 61
Query: 249 HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQV 308
++ + C I VP DV VA E P + S V D ILD+G + + + ++
Sbjct: 62 KRLL-----TTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEI 116
Query: 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGIS 368
+ A+T++WNGP+GVFE F + T VA+ +A SIAGGGDT+ A+ GI+
Sbjct: 117 LKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA----FSIAGGGDTLAAIDLFGIA 172
Query: 369 NEFTYVSTAGGAFLEWLEGK 388
++ +Y+ST GGAFLE++EGK
Sbjct: 173 DKISYISTGGGAFLEFVEGK 192
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3}
(A:189-390)
Length = 202
Score = 209 bits (532), Expect = 8e-55
Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 189 KPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSD 246
P + ++GG+KV + ++ N+++ + D ++ GG +AN F +A+G +GR +
Sbjct: 2 SPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKK 61
Query: 247 NVHQIAWEAKRSA----CEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTV 302
+ A+ I P D V + + + + + I+D+G +T
Sbjct: 62 GLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTA 121
Query: 303 EYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITAL 362
E ++++ +AR ++ NGP+GVFE E F TVEV +A + S+ GGG +I ++
Sbjct: 122 EKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIA----DSPAFSVLGGGHSIASI 177
Query: 363 AHAGISNEFTYVSTAGGAFLEWLEGK 388
GI T++ST GGA L + G+
Sbjct: 178 QKYGI-TGITHISTGGGAMLSFFAGE 202
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} (A:1-185)
Length = 185
Score = 201 bits (513), Expect = 1e-52
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64
+T+ D+ D+RG R RVD+NVP G + D TRI +PTI L+E AKV++ SHLGR
Sbjct: 4 KTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGR 62
Query: 65 PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124
P+ K ++ L V +L + + N+ +G + ++ L+EG ++L ENVRFY
Sbjct: 63 PKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPG 122
Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE 181
EE+NDP+ + + D Y+NDAF +HRAHAS G++H LP+ G M+KEL +L
Sbjct: 123 EEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLPAVAGFLMEKELEVLG 179
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} (A:1-182)
Length = 182
Score = 195 bits (497), Expect = 8e-51
Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64
T+ D+ D++G R ++RVD+NVP DG V D TRI +PTI +E+ AKV++ SHLGR
Sbjct: 3 MTIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGR 61
Query: 65 PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124
P+ + + SL V +L K + FV +G + +++ L EG ++L EN RF+
Sbjct: 62 PKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPG 121
Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE 181
E +NDP+ + + D ++NDAF +HRAHAS G++ +PS G M+KE+ L
Sbjct: 122 ETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFIPSVAGFLMEKEIKFLS 178
>1v6s_A Phosphoglycerate kinase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 1.50A {Thermus thermophilus}
(A:1-180,A:381-390)
Length = 190
Score = 193 bits (492), Expect = 4e-50
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63
+RT+ DL D +G R L+RVD+NVP DGKV D TRI +PT+ L+ A +V+ SHLG
Sbjct: 1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLG 59
Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123
RP+ K SL V + L + + +L G ++L ENVRF
Sbjct: 60 RPKGPDPKY-SLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEP 118
Query: 124 EEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE 181
EE+NDP+ +R G+ ++ DAF +HRAHAS+ G++ LLP+Y G M+KE+ L
Sbjct: 119 GEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPAYAGFLMEKEVRALS 176
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
riken structural genomics/proteomics initiative, RSGI,
NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3}
(A:1-188,A:391-410)
Length = 208
Score = 191 bits (486), Expect = 1e-49
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63
+ + D + LRVD N P DGK+ R + V+PTI L+E AKVVI +H G
Sbjct: 1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQG 59
Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123
+P S+ + + + +L +++ ++ D G + I L G + + EN+RF +
Sbjct: 60 KP--YSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSA 117
Query: 124 EEERNDPD-------FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKE 176
EE +N P V+ LS+ D+ +NDAF+ +HR+ S+ G + + P +G M+KE
Sbjct: 118 EEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIMGFLMEKE 177
Query: 177 LSMLESCFSESKKPLV 192
+ L + + P++
Sbjct: 178 IEALMRAYYSKELPVL 193
>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open
conformation, ADP complex, selenomethionine,
transferase; HET: AMP; 3.00A {Plasmodium falciparum}
(A:1-211)
Length = 211
Score = 187 bits (477), Expect = 2e-48
Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIF 59
+ +++DL+DI+ + L+RVD+NVP +G + D RI +PTI L ++ A K+++
Sbjct: 11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILI 70
Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119
SH GRP ++ +L V + +L + +LF+NDC+G + I + E +IL EN+
Sbjct: 71 SHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENL 130
Query: 120 RFYSEEER---------------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164
RF+ EEE + F L++ D +INDAF +HRAH+S G+
Sbjct: 131 RFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSXVGVKL- 189
Query: 165 LPSYIGRAMQKELSMLE 181
G +KEL
Sbjct: 190 NVKASGFLXKKELEYFS 206
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli} (A:1-181,A:374-387)
Length = 195
Score = 187 bits (476), Expect = 2e-48
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 9/194 (4%)
Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63
+ M DL D+ G R +R D NVP DGKV RI +PTI +++ AKV++ SHLG
Sbjct: 3 VIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLG 61
Query: 64 RP-QSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFY 122
RP + + +++ SL VV+ + L + V D + ++EG +++ ENVRF
Sbjct: 62 RPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFN 115
Query: 123 SEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLP-SYIGRAMQKELSMLE 181
E+++D + + D ++ DAF +HRA AS G+ + G + EL L
Sbjct: 116 KGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALG 175
Query: 182 SCFSESKKPLVAIV 195
E P VA++
Sbjct: 176 KALKEPVLPAVAML 189
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} (A:1-203)
Length = 203
Score = 181 bits (460), Expect = 2e-46
Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64
+++N+ D++G + L+RVD+NVP +GK+ + RI +PT+ +++ + V+ SHLGR
Sbjct: 3 KSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGR 61
Query: 65 PQSKSDKDC----------------SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASL 108
P+ +L V +L + + F DC+ + ++ +
Sbjct: 62 PKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAA--DVVSKM 119
Query: 109 SEGGIILAENVRFYSEEER----NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164
S G ++L ENVRFY EE + ++L+ GD YI+DAF +HR A++TG+ +
Sbjct: 120 SPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKI 179
Query: 165 LPS-YIGRAMQKELSMLE 181
L + G M+KE+S
Sbjct: 180 LGNGAAGYLMEKEISYFA 197
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} (A:1-201)
Length = 201
Score = 178 bits (454), Expect = 7e-46
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 17/196 (8%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVV-IF 59
+S ++ DL D++ R +RVD+NVP K+ RI +PTI ++E + V +
Sbjct: 2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLA 60
Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119
SHLG+P + ++ SL V +S+L K++ F+NDC+G + ++ + + G +IL EN+
Sbjct: 61 SHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENL 120
Query: 120 RFYSEEER--------------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL 165
R++ EEE + F LS D YINDAF +HRAH+S+ G L
Sbjct: 121 RYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGF-DLP 179
Query: 166 PSYIGRAMQKELSMLE 181
G ++KEL
Sbjct: 180 QRAAGFLLEKELKYFG 195
>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary
complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa}
(A:1-200)
Length = 200
Score = 174 bits (442), Expect = 2e-44
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 19/194 (9%)
Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLG 63
T++ L +++G R ++RVD+NVP ++ + RI+ VP+I ++ AK VV+ SHLG
Sbjct: 3 LTLDKL-NVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLG 61
Query: 64 RPQSKSDKD-CSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFY 122
RP D SL V + +S L K +LF+ DC+G + ++ A + G +IL EN+RF+
Sbjct: 62 RPDGSPMPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFH 121
Query: 123 SEEE---------------RNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPS 167
EEE F LS GD Y+NDAF +HRAH+S+ G+ +L
Sbjct: 122 VEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGV-NLPKK 180
Query: 168 YIGRAMQKELSMLE 181
M+KEL+
Sbjct: 181 AGAFLMKKELNYFA 194
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase,
glycolysis, mutant, permutation, permuted sequence,
protein folding; 2.30A {Saccharomyces cerevisiae}
(A:1-131,A:347-416)
Length = 200
Score = 118 bits (297), Expect = 1e-27
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 74 SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEER------ 127
SL V +S+L K++ F+NDC+G + ++ + + G +IL EN+R++ EEE
Sbjct: 4 SLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDG 63
Query: 128 --------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSM 179
+ F LS D YINDAF +HRAH+S+ G L G ++KEL
Sbjct: 64 QKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKY 122
Query: 180 LESCFSESKKPLVAI----VGGSKV 200
+++ + +V
Sbjct: 123 FGKALENPTSSKLSVQDLDLKDKRV 147
Score = 88.6 bits (220), Expect = 1e-18
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVI-FS 60
S ++ DL D++ R +RVD+NVP K+ RI +PTI ++E + V+ S
Sbjct: 132 SSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLAS 190
Query: 61 HLGRPQSKSD 70
HLGRP + +
Sbjct: 191 HLGRPNGERN 200
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 30.5 bits (68), Expect = 0.35
Identities = 7/99 (7%), Positives = 26/99 (26%), Gaps = 26/99 (26%)
Query: 283 VSAQSVPLDSIILDVGFKTVEYIKQVIAQART--------------VMWNGPLGVFE--I 326
+ +++P ++L + +I Q+++ + +
Sbjct: 145 IQEKALP---LLLS-NPP-----RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195
Query: 327 EPFDRATVEVAHYVAKLTKERRIISIA-GGGDTITALAH 364
P ++ V ++ K + +
Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI 234
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic resolution; HET: FAD; 0.92A
{Streptomyces SP} (A:1-48,A:115-153,A:214-284,A:456-504)
Length = 207
Score = 29.9 bits (66), Expect = 0.68
Identities = 26/145 (17%), Positives = 35/145 (24%), Gaps = 29/145 (20%)
Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFS---------------DNVHQIAWEAK 256
V +VIG G L + D +A E K
Sbjct: 4 GYVPAVVIGTGYG-------AAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNGGMAVEPK 56
Query: 257 RSACEIIVPR-------DVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVI 309
RS E I+PR D R + LD L T + Q +
Sbjct: 57 RSYFEEILPRVDSSEMYDRYFPRANSMLRVNYGNNHGKQSLDKTYLAAALGTGKVTIQTL 116
Query: 310 AQARTVMWNGPLGVFEIEPFDRATV 334
Q +T+ G
Sbjct: 117 HQVKTIRQTKDGGYALTVEQKDTDG 141
>3dma_A Exopolyphosphatase-related protein; structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG; 2.25A
{Bacteroides fragilis} (A:1-214)
Length = 214
Score = 27.5 bits (60), Expect = 3.2
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 37 TRIERVVPTILELVEKKAKVVIFSH 61
+ + + E+ K+VI SH
Sbjct: 5 VIAQAHIDHFTKWFERADKIVIVSH 29
>2r5f_A Transcriptional regulator, putative; transcription
regulator, sugar-binding domain, structural genomics,
PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:)
Length = 264
Score = 27.4 bits (60), Expect = 3.6
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 327 EPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365
AHY+ + I I+ TI A
Sbjct: 38 SIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAXVSH 76
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann,
flavoprotein, alternative splicing, FAD, mitochondrion,
NADP, redox-active center, selenium; HET: FAD NA7; 2.25A
{Mus musculus} PDB: 1zkq_A* 1zdl_A* (A:1-155,A:315-356)
Length = 197
Score = 27.2 bits (59), Expect = 3.7
Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 10/152 (6%)
Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVA 271
+ D LVIGGG + +G+ + D+ + + C + +
Sbjct: 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM 64
Query: 272 REMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDR 331
+ + + + +KT+ Q ++
Sbjct: 65 HQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGH--------RVQLQD 116
Query: 332 ATVEVAHYVAKLTKERRI--ISIAGGGDTITA 361
V+ + A E + + G ++A
Sbjct: 117 RKVKYFNIKASFVDEHTVRGVDKGGKATLLSA 148
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.70A {Vibrio fischeri ES114} (A:)
Length = 267
Score = 27.0 bits (59), Expect = 4.5
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 327 EPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365
E + V+ Y+ +E +++ G + A+A
Sbjct: 36 EQRKQVAALVSSYLNNNLQEGXAVAVGQGQ-NVAAVADH 73
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting,
electron transport, transport, chromophore, bIle
pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter
violaceus} PDB: 2vjr_A* (A:36-162)
Length = 127
Score = 26.7 bits (59), Expect = 5.5
Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 17/103 (16%)
Query: 235 VGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSII 294
++ C RD S + I + + V RE+ ++
Sbjct: 42 TNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREV--------NRTFNLSPSW-- 91
Query: 295 LDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVA 337
+E +K + + + + +G D ++
Sbjct: 92 ------YIEALKHIKGKVGSQL-SGQPLTEANAYIDYCINALS 127
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
(A:194-344)
Length = 151
Score = 26.1 bits (57), Expect = 7.5
Identities = 6/53 (11%), Positives = 14/53 (26%)
Query: 335 EVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEG 387
+ + + ++ G + A E + + E L G
Sbjct: 1 DWPEXRVAIGARPSLFTLGRGTSLAVSNEAALKFKETCQLHAESYSSAEVLHG 53
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like
fold, oxidoreductase; HET: FAD; 2.57A {Acidianus
ambivalens} PDB: 3h8i_A* (A:1-109,A:286-409)
Length = 233
Score = 26.3 bits (57), Expect = 7.9
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 23/123 (18%)
Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVA 271
KV LV+GG + +L + S + +I
Sbjct: 2 TKV--LVLGGRFG-------ALTAAYTLKRLVGSK--ADVK---------VINKSRFSYF 41
Query: 272 REMKTGIPTQVVSAQSV--PLDSIILDVGFKTVE-YIKQVIAQARTVMWNGPLGVFEIEP 328
R + V + L + + G + E ++++ A++ V + P G E
Sbjct: 42 RPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEE 101
Query: 329 FDR 331
+D
Sbjct: 102 YDY 104
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,944,634
Number of extensions: 130419
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 36
Length of query: 400
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 310
Effective length of database: 1,913,599
Effective search space: 593215690
Effective search space used: 593215690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)