RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str. psy62] (400 letters) >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} (A:204-415) Length = 212 Score = 241 bits (617), Expect = 1e-64 Identities = 85/209 (40%), Positives = 130/209 (62%) Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNV 248 +PLVAIVGG+KVS KI LL N+++++D L+IGG MA +FL AQG +G+S C+ + Sbjct: 2 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 61 Query: 249 HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQV 308 + +A+ ++I+P D V E K + Q++P + LD+G KT+E Q Sbjct: 62 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 121 Query: 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGIS 368 I + ++ +WNGP+GVFE+ P+ + T +A + + T E ++SI GGGD+ +A +G + Sbjct: 122 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 181 Query: 369 NEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 ++VST GGA LE LEGK LPG+ L Sbjct: 182 KRMSHVSTGGGASLELLEGKTLPGVTVLD 210 >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} (A:183-398) Length = 216 Score = 232 bits (593), Expect = 6e-62 Identities = 89/211 (42%), Positives = 142/211 (67%), Gaps = 2/211 (0%) Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDN 247 +KP V ++GG+KVS KI ++ NL++K D+++IGG M +FL A G VG S + D D Sbjct: 3 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 62 Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSA-QSVPLDSIILDVGFKTVEYIK 306 ++ +AK EI++P D V+A++++ G+ +VV +P + LD+G +T+E K Sbjct: 63 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 122 Query: 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAG 366 Q ++ A+TV+WNGP+GVFEI+ F T +VA +A LT++ I++ GGGD+ A+ G Sbjct: 123 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFG 181 Query: 367 ISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 + ++F++VST GGA LE+LEGK+LPGI ++ Sbjct: 182 LEDKFSHVSTGGGASLEFLEGKELPGIASMR 212 >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} (A:186-394) Length = 209 Score = 232 bits (592), Expect = 7e-62 Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 3/209 (1%) Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNV 248 +P AI+GG+KV KI ++ NL++KVD L+IGGG+A +F+ A G VG+SL + D + Sbjct: 2 RPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELA 61 Query: 249 HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQV 308 +AK +P DVVVA T+VV ++P D LD+G KT E + V Sbjct: 62 KSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDV 121 Query: 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGIS 368 I +++ V+WNGP+GVFE++ F T +A +A+ S+ GGGD+ A+ G++ Sbjct: 122 IRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALDTY---SVIGGGDSAAAVEKFGLA 178 Query: 369 NEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 ++ ++ST GGA LE++EGK LPG+VAL Sbjct: 179 DKMDHISTGGGASLEFMEGKQLPGVVALE 207 >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:132-346) Length = 215 Score = 226 bits (577), Expect = 4e-60 Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 3/211 (1%) Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRSLCQRDFSDN 247 +P +AI+GG+KV+ KI L+ NL+ KVD ++IGGGMA +F V + +G S+ + ++ Sbjct: 1 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 60 Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV-SAQSVPLDSIILDVGFKTVEYIK 306 V ++ +AK E+++P D ++A T+ V + +P LD G ++ + Sbjct: 61 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 120 Query: 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAG 366 +A+A+T++WNGP GVFE E F T + V K + I GGGDT T G Sbjct: 121 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYG 179 Query: 367 ISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 ++++ ++VST GGA LE LEGK+LPG+ LS Sbjct: 180 VTDKISHVSTGGGASLELLEGKELPGVAFLS 210 >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:202-415) Length = 214 Score = 225 bits (575), Expect = 7e-60 Identities = 79/211 (37%), Positives = 124/211 (58%), Gaps = 3/211 (1%) Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRSLCQRDFSDN 247 +P +AI+GG+KV+ KI L+ NL+ KVD ++IGGGMA +F V + +G S+ + ++ Sbjct: 2 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 61 Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV-SAQSVPLDSIILDVGFKTVEYIK 306 V ++ +AK E+++P D ++A T+ V + +P LD G ++ + Sbjct: 62 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 121 Query: 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAG 366 +A+A+T++WNGP GVFE E F T + V K + I GGGDT T G Sbjct: 122 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYG 180 Query: 367 ISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 ++++ ++VST GGA LE LEGK+LPG+ LS Sbjct: 181 VTDKISHVSTGGGASLELLEGKELPGVAFLS 211 >1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} (A:201-413) Length = 213 Score = 222 bits (567), Expect = 5e-59 Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 3/212 (1%) Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRSLCQRDFSD 246 ++P +AI+GG+KV+ KI L+ N++ KV++++IGGGMA +FL V M +G SL Sbjct: 1 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 60 Query: 247 NVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS-AQSVPLDSIILDVGFKTVEYI 305 V + +A + +I +P D V A + + A +P + LD G K+ Sbjct: 61 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 120 Query: 306 KQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365 + +A+A+ ++WNGP+GVFE E F + T + V K T I+I GGGDT T A Sbjct: 121 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKW 179 Query: 366 GISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 + ++VST GGA LE LEGK LPG+ ALS Sbjct: 180 NTEDNVSHVSTGGGASLELLEGKVLPGVDALS 211 >1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} (A:181-380) Length = 200 Score = 221 bits (564), Expect = 1e-58 Identities = 80/199 (40%), Positives = 123/199 (61%), Gaps = 3/199 (1%) Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDN 247 ++P ++GG+KVS KI ++ +L+ ++D+L+IGG MA +FL A G VGRSL + D D Sbjct: 3 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 62 Query: 248 VHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQ 307 + A+ + +P DVV A ++ G+ T+V A+++P+ + LD+G KT E + Sbjct: 63 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 122 Query: 308 VIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGI 367 + ARTV WNGP+GVFE+ PFD T+ V +A L ++ GGGD++ A+ G+ Sbjct: 123 ALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALEG---AFTVVGGGDSVAAVNRLGL 179 Query: 368 SNEFTYVSTAGGAFLEWLE 386 F +VST GGA LE+LE Sbjct: 180 KERFGHVSTGGGASLEFLE 198 >1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} (A:212-425) Length = 214 Score = 220 bits (561), Expect = 3e-58 Identities = 88/212 (41%), Positives = 129/212 (60%), Gaps = 3/212 (1%) Query: 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVA-QGMGVGRSLCQRDFSD 246 ++PL+AI+GG+KVS KI L+ NL+ KVD+ +IGGG A +F +G SL S Sbjct: 2 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 61 Query: 247 NVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS-AQSVPLDSIILDVGFKTVEYI 305 V +I +AK +I +P D +A T+ V+ + +P + LD G K++E Sbjct: 62 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 121 Query: 306 KQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365 K VI ++TV+WNGP GVFE F + ++E + V ++TK+ I+I GGGDT + + Sbjct: 122 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 180 Query: 366 GISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397 NE ++VST GGA LE LEGK+LPG++ALS Sbjct: 181 NKKNEISHVSTGGGASLELLEGKELPGVLALS 212 >1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} (A:182-373) Length = 192 Score = 216 bits (551), Expect = 5e-57 Identities = 89/200 (44%), Positives = 129/200 (64%), Gaps = 9/200 (4%) Query: 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNV 248 +P+VAIVGGSKVSTK+T+L +L K D+L++GGG+AN+F+ AQG VG+SL + D D Sbjct: 2 RPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEA 61 Query: 249 HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQV 308 ++ + C I VP DV VA E P + S V D ILD+G + + + ++ Sbjct: 62 KRLL-----TTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEI 116 Query: 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGIS 368 + A+T++WNGP+GVFE F + T VA+ +A SIAGGGDT+ A+ GI+ Sbjct: 117 LKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA----FSIAGGGDTLAAIDLFGIA 172 Query: 369 NEFTYVSTAGGAFLEWLEGK 388 ++ +Y+ST GGAFLE++EGK Sbjct: 173 DKISYISTGGGAFLEFVEGK 192 >2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:189-390) Length = 202 Score = 209 bits (532), Expect = 8e-55 Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 11/206 (5%) Query: 189 KPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSD 246 P + ++GG+KV + ++ N+++ + D ++ GG +AN F +A+G +GR + Sbjct: 2 SPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKK 61 Query: 247 NVHQIAWEAKRSA----CEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTV 302 + A+ I P D V + + + + + I+D+G +T Sbjct: 62 GLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTA 121 Query: 303 EYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITAL 362 E ++++ +AR ++ NGP+GVFE E F TVEV +A + S+ GGG +I ++ Sbjct: 122 EKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIA----DSPAFSVLGGGHSIASI 177 Query: 363 AHAGISNEFTYVSTAGGAFLEWLEGK 388 GI T++ST GGA L + G+ Sbjct: 178 QKYGI-TGITHISTGGGAMLSFFAGE 202 >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} (A:1-185) Length = 185 Score = 201 bits (513), Expect = 1e-52 Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64 +T+ D+ D+RG R RVD+NVP G + D TRI +PTI L+E AKV++ SHLGR Sbjct: 4 KTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGR 62 Query: 65 PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124 P+ K ++ L V +L + + N+ +G + ++ L+EG ++L ENVRFY Sbjct: 63 PKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPG 122 Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE 181 EE+NDP+ + + D Y+NDAF +HRAHAS G++H LP+ G M+KEL +L Sbjct: 123 EEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLPAVAGFLMEKELEVLG 179 >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} (A:1-182) Length = 182 Score = 195 bits (497), Expect = 8e-51 Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64 T+ D+ D++G R ++RVD+NVP DG V D TRI +PTI +E+ AKV++ SHLGR Sbjct: 3 MTIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGR 61 Query: 65 PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124 P+ + + SL V +L K + FV +G + +++ L EG ++L EN RF+ Sbjct: 62 PKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPG 121 Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE 181 E +NDP+ + + D ++NDAF +HRAHAS G++ +PS G M+KE+ L Sbjct: 122 ETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFIPSVAGFLMEKEIKFLS 178 >1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} (A:1-180,A:381-390) Length = 190 Score = 193 bits (492), Expect = 4e-50 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 2/178 (1%) Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63 +RT+ DL D +G R L+RVD+NVP DGKV D TRI +PT+ L+ A +V+ SHLG Sbjct: 1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLG 59 Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123 RP+ K SL V + L + + +L G ++L ENVRF Sbjct: 60 RPKGPDPKY-SLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEP 118 Query: 124 EEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE 181 EE+NDP+ +R G+ ++ DAF +HRAHAS+ G++ LLP+Y G M+KE+ L Sbjct: 119 GEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPAYAGFLMEKEVRALS 176 >2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:1-188,A:391-410) Length = 208 Score = 191 bits (486), Expect = 1e-49 Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 10/196 (5%) Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63 + + D + LRVD N P DGK+ R + V+PTI L+E AKVVI +H G Sbjct: 1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQG 59 Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123 +P S+ + + + +L +++ ++ D G + I L G + + EN+RF + Sbjct: 60 KP--YSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSA 117 Query: 124 EEERNDPD-------FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKE 176 EE +N P V+ LS+ D+ +NDAF+ +HR+ S+ G + + P +G M+KE Sbjct: 118 EEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIMGFLMEKE 177 Query: 177 LSMLESCFSESKKPLV 192 + L + + P++ Sbjct: 178 IEALMRAYYSKELPVL 193 >1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} (A:1-211) Length = 211 Score = 187 bits (477), Expect = 2e-48 Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 17/197 (8%) Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIF 59 + +++DL+DI+ + L+RVD+NVP +G + D RI +PTI L ++ A K+++ Sbjct: 11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILI 70 Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119 SH GRP ++ +L V + +L + +LF+NDC+G + I + E +IL EN+ Sbjct: 71 SHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENL 130 Query: 120 RFYSEEER---------------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164 RF+ EEE + F L++ D +INDAF +HRAH+S G+ Sbjct: 131 RFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSXVGVKL- 189 Query: 165 LPSYIGRAMQKELSMLE 181 G +KEL Sbjct: 190 NVKASGFLXKKELEYFS 206 >1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} (A:1-181,A:374-387) Length = 195 Score = 187 bits (476), Expect = 2e-48 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 9/194 (4%) Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63 + M DL D+ G R +R D NVP DGKV RI +PTI +++ AKV++ SHLG Sbjct: 3 VIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLG 61 Query: 64 RP-QSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFY 122 RP + + +++ SL VV+ + L + V D + ++EG +++ ENVRF Sbjct: 62 RPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVRFN 115 Query: 123 SEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLP-SYIGRAMQKELSMLE 181 E+++D + + D ++ DAF +HRA AS G+ + G + EL L Sbjct: 116 KGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALG 175 Query: 182 SCFSESKKPLVAIV 195 E P VA++ Sbjct: 176 KALKEPVLPAVAML 189 >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} (A:1-203) Length = 203 Score = 181 bits (460), Expect = 2e-46 Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 24/198 (12%) Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64 +++N+ D++G + L+RVD+NVP +GK+ + RI +PT+ +++ + V+ SHLGR Sbjct: 3 KSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGR 61 Query: 65 PQSKSDKDC----------------SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASL 108 P+ +L V +L + + F DC+ + ++ + Sbjct: 62 PKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAA--DVVSKM 119 Query: 109 SEGGIILAENVRFYSEEER----NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164 S G ++L ENVRFY EE + ++L+ GD YI+DAF +HR A++TG+ + Sbjct: 120 SPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKI 179 Query: 165 LPS-YIGRAMQKELSMLE 181 L + G M+KE+S Sbjct: 180 LGNGAAGYLMEKEISYFA 197 >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:1-201) Length = 201 Score = 178 bits (454), Expect = 7e-46 Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 17/196 (8%) Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVV-IF 59 +S ++ DL D++ R +RVD+NVP K+ RI +PTI ++E + V + Sbjct: 2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLA 60 Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119 SHLG+P + ++ SL V +S+L K++ F+NDC+G + ++ + + G +IL EN+ Sbjct: 61 SHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENL 120 Query: 120 RFYSEEER--------------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL 165 R++ EEE + F LS D YINDAF +HRAH+S+ G L Sbjct: 121 RYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGF-DLP 179 Query: 166 PSYIGRAMQKELSMLE 181 G ++KEL Sbjct: 180 QRAAGFLLEKELKYFG 195 >1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} (A:1-200) Length = 200 Score = 174 bits (442), Expect = 2e-44 Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 19/194 (9%) Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLG 63 T++ L +++G R ++RVD+NVP ++ + RI+ VP+I ++ AK VV+ SHLG Sbjct: 3 LTLDKL-NVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLG 61 Query: 64 RPQSKSDKD-CSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFY 122 RP D SL V + +S L K +LF+ DC+G + ++ A + G +IL EN+RF+ Sbjct: 62 RPDGSPMPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFH 121 Query: 123 SEEE---------------RNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPS 167 EEE F LS GD Y+NDAF +HRAH+S+ G+ +L Sbjct: 122 VEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGV-NLPKK 180 Query: 168 YIGRAMQKELSMLE 181 M+KEL+ Sbjct: 181 AGAFLMKKELNYFA 194 >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:1-131,A:347-416) Length = 200 Score = 118 bits (297), Expect = 1e-27 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%) Query: 74 SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEER------ 127 SL V +S+L K++ F+NDC+G + ++ + + G +IL EN+R++ EEE Sbjct: 4 SLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDG 63 Query: 128 --------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSM 179 + F LS D YINDAF +HRAH+S+ G L G ++KEL Sbjct: 64 QKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKY 122 Query: 180 LESCFSESKKPLVAI----VGGSKV 200 +++ + +V Sbjct: 123 FGKALENPTSSKLSVQDLDLKDKRV 147 Score = 88.6 bits (220), Expect = 1e-18 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVI-FS 60 S ++ DL D++ R +RVD+NVP K+ RI +PTI ++E + V+ S Sbjct: 132 SSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLAS 190 Query: 61 HLGRPQSKSD 70 HLGRP + + Sbjct: 191 HLGRPNGERN 200 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 30.5 bits (68), Expect = 0.35 Identities = 7/99 (7%), Positives = 26/99 (26%), Gaps = 26/99 (26%) Query: 283 VSAQSVPLDSIILDVGFKTVEYIKQVIAQART--------------VMWNGPLGVFE--I 326 + +++P ++L + +I Q+++ + + Sbjct: 145 IQEKALP---LLLS-NPP-----RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 Query: 327 EPFDRATVEVAHYVAKLTKERRIISIA-GGGDTITALAH 364 P ++ V ++ K + + Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI 234 >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} (A:1-48,A:115-153,A:214-284,A:456-504) Length = 207 Score = 29.9 bits (66), Expect = 0.68 Identities = 26/145 (17%), Positives = 35/145 (24%), Gaps = 29/145 (20%) Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFS---------------DNVHQIAWEAK 256 V +VIG G L + D +A E K Sbjct: 4 GYVPAVVIGTGYG-------AAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNGGMAVEPK 56 Query: 257 RSACEIIVPR-------DVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVI 309 RS E I+PR D R + LD L T + Q + Sbjct: 57 RSYFEEILPRVDSSEMYDRYFPRANSMLRVNYGNNHGKQSLDKTYLAAALGTGKVTIQTL 116 Query: 310 AQARTVMWNGPLGVFEIEPFDRATV 334 Q +T+ G Sbjct: 117 HQVKTIRQTKDGGYALTVEQKDTDG 141 >3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} (A:1-214) Length = 214 Score = 27.5 bits (60), Expect = 3.2 Identities = 6/25 (24%), Positives = 11/25 (44%) Query: 37 TRIERVVPTILELVEKKAKVVIFSH 61 + + + E+ K+VI SH Sbjct: 5 VIAQAHIDHFTKWFERADKIVIVSH 29 >2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:) Length = 264 Score = 27.4 bits (60), Expect = 3.6 Identities = 8/39 (20%), Positives = 11/39 (28%) Query: 327 EPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365 AHY+ + I I+ TI A Sbjct: 38 SIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAXVSH 76 >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* (A:1-155,A:315-356) Length = 197 Score = 27.2 bits (59), Expect = 3.7 Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 10/152 (6%) Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVA 271 + D LVIGGG + +G+ + D+ + + C + + Sbjct: 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM 64 Query: 272 REMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDR 331 + + + + +KT+ Q ++ Sbjct: 65 HQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGH--------RVQLQD 116 Query: 332 ATVEVAHYVAKLTKERRI--ISIAGGGDTITA 361 V+ + A E + + G ++A Sbjct: 117 RKVKYFNIKASFVDEHTVRGVDKGGKATLLSA 148 >3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114} (A:) Length = 267 Score = 27.0 bits (59), Expect = 4.5 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 327 EPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHA 365 E + V+ Y+ +E +++ G + A+A Sbjct: 36 EQRKQVAALVSSYLNNNLQEGXAVAVGQGQ-NVAAVADH 73 >2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transport, chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A* (A:36-162) Length = 127 Score = 26.7 bits (59), Expect = 5.5 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 17/103 (16%) Query: 235 VGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSII 294 ++ C RD S + I + + V RE+ ++ Sbjct: 42 TNQAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREV--------NRTFNLSPSW-- 91 Query: 295 LDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVA 337 +E +K + + + + +G D ++ Sbjct: 92 ------YIEALKHIKGKVGSQL-SGQPLTEANAYIDYCINALS 127 >3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:194-344) Length = 151 Score = 26.1 bits (57), Expect = 7.5 Identities = 6/53 (11%), Positives = 14/53 (26%) Query: 335 EVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEG 387 + + + ++ G + A E + + E L G Sbjct: 1 DWPEXRVAIGARPSLFTLGRGTSLAVSNEAALKFKETCQLHAESYSSAEVLHG 53 >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* (A:1-109,A:286-409) Length = 233 Score = 26.3 bits (57), Expect = 7.9 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 23/123 (18%) Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVA 271 KV LV+GG + +L + S + +I Sbjct: 2 TKV--LVLGGRFG-------ALTAAYTLKRLVGSK--ADVK---------VINKSRFSYF 41 Query: 272 REMKTGIPTQVVSAQSV--PLDSIILDVGFKTVE-YIKQVIAQARTVMWNGPLGVFEIEP 328 R + V + L + + G + E ++++ A++ V + P G E Sbjct: 42 RPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEE 101 Query: 329 FDR 331 +D Sbjct: 102 YDY 104 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0501 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,944,634 Number of extensions: 130419 Number of successful extensions: 562 Number of sequences better than 10.0: 1 Number of HSP's gapped: 518 Number of HSP's successfully gapped: 36 Length of query: 400 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 310 Effective length of database: 1,913,599 Effective search space: 593215690 Effective search space used: 593215690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.9 bits)