HHsearch alignment for GI: 254780654 and conserved domain: COG0569
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].
Probab=94.61 E-value=0.2 Score=29.83 Aligned_cols=126 Identities=23% Similarity=0.250 Sum_probs=70.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH--HCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875--14412556740898365300165654211012
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLR--YDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~--yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~--d~~~~~~~~~~~~~~-------~------~v~gd~t-----~~~ 57 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE---GHNVVLIDR--DEERVEEFLADELDT-------H------VVIGDAT-----DED 57 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEEC--CHHHHHHHHHHCCCE-------E------EEEECCC-----CHH
T ss_conf 9899989857889999999878---990899976--889999863200044-------9------9992688-----989
Q ss_pred CCCCCCCCCCCEEEEECCCCCC-CCCCCHHHH-CCCCEEEEECCCCCCC-EEEEEECCCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 3333344656327860664333-212200110-5842343303678873-489840553212222103305764102346
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVT-QEKASLHLS-NGSQRVLVSAPCKGVK-KTIVYGVNHQSLNKEDKVVSNASCTTNCLV 157 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~-~~~~~~HL~-~GakkVIiSaP~kd~~-~tiV~GvN~~~~~~~~~IiS~aSCTtn~la 157 (333)
T Consensus 58 ~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g--------~~~ii~Pe~~~~~~l~ 129 (225)
T COG0569 58 VLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLG--------ADVIISPEKLAAKRLA 129 (225)
T ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC--------CCEEECHHHHHHHHHH
T ss_conf 99867986389999980886799999999998739984999956941677898679--------9489755899999999
Q ss_pred HH
Q ss_conf 68
Q gi|254780654|r 158 PV 159 (333)
Q Consensus 158 Pv 159 (333)
T Consensus 130 ~~ 131 (225)
T COG0569 130 RL 131 (225)
T ss_pred HH
T ss_conf 98