HHsearch alignment for GI: 254780654 and conserved domain: cd01483
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.53 E-value=0.12 Score=31.28 Aligned_cols=115 Identities=11% Similarity=0.123 Sum_probs=64.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH-CCCCCCCCCEEEEECCCC-CCC-CCCCCCCCCC
Q ss_conf 8988566868899999999688887289996068899999988751-441255674089836530-016-5654211012
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY-DSVHGRFPGEVKIIGDTI-DVG-LGPIQVTSIR 80 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y-DS~hG~~~~~v~~~~~~l-~in-~~~i~i~~~~ 80 (333)
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD-~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~--a~~~l~~~np~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLID-FDTVELSNLNRQFLARQADIGKPKAEV--AARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCHHHHCCHHHHH--HHHHHHHHCCCCEEEEEECC
T ss_conf 999999798999999999993797199997-898750014642258988949224899--99999856898389999456
Q ss_pred C-CCC--CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEC
Q ss_conf 3-333--3446563278606643332122001105842343303
Q gi|254780654|r 81 D-PQD--LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 (333)
Q Consensus 81 ~-p~~--i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSa 121 (333)
T Consensus 78 ~~~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~ 121 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred CCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89646999975999999877999999999999998699889963