HHsearch alignment for GI: 254780654 and conserved domain: cd05211

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.82  E-value=0.53  Score=27.08  Aligned_cols=83  Identities=22%  Similarity=0.328  Sum_probs=49.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---------CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             189885668688999999996888872899960688---------99999988751441255674089836530016565
Q gi|254780654|r    3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN---------SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP   73 (333)
Q Consensus         3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~---------~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~   73 (333)
T Consensus        24 ~~vaVqGfGnVG~~~a~~l~~~---GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~-----------------   83 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVK-----------------   83 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCC-----------------
T ss_conf             9999989889999999999985---99899998578717789998699999999818965366-----------------


Q ss_pred             CCCCCCCCCCCCCCC-CCCEEEEEC-CCCCCCCCCCH
Q ss_conf             421101233333446-563278606-64333212200
Q gi|254780654|r   74 IQVTSIRDPQDLPWG-DVDVAMECT-GFFVTQEKASL  108 (333)
Q Consensus        74 i~i~~~~~p~~i~W~-~vDiViEcT-G~f~~~~~~~~  108 (333)
T Consensus        84 ---~~~~~~~~~~~~~~~DIliPaAl~~~I~~~~a~~  117 (217)
T cd05211          84 ---VQDYFPGEAILGLDVDIFAPCALGNVIDLENAKK  117 (217)
T ss_pred             ---CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf             ---6530598650036776896424458879899987