HHsearch alignment for GI: 254780654 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.82 E-value=0.53 Score=27.08 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=49.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---------CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688---------99999988751441255674089836530016565
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN---------SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP 73 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~---------~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~ 73 (333)
T Consensus 24 ~~vaVqGfGnVG~~~a~~l~~~---GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~----------------- 83 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVK----------------- 83 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCC-----------------
T ss_conf 9999989889999999999985---99899998578717789998699999999818965366-----------------
Q ss_pred CCCCCCCCCCCCCCC-CCCEEEEEC-CCCCCCCCCCH
Q ss_conf 421101233333446-563278606-64333212200
Q gi|254780654|r 74 IQVTSIRDPQDLPWG-DVDVAMECT-GFFVTQEKASL 108 (333)
Q Consensus 74 i~i~~~~~p~~i~W~-~vDiViEcT-G~f~~~~~~~~ 108 (333)
T Consensus 84 ---~~~~~~~~~~~~~~~DIliPaAl~~~I~~~~a~~ 117 (217)
T cd05211 84 ---VQDYFPGEAILGLDVDIFAPCALGNVIDLENAKK 117 (217)
T ss_pred ---CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf ---6530598650036776896424458879899987