Query gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 333
No_of_seqs 152 out of 3384
Neff 5.6
Searched_HMMs 39220
Date Sun May 29 21:06:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780654.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01534 GAPDH-I glyceraldehy 100.0 0 0 1005.9 20.9 321 4-324 1-366 (366)
2 PRK07729 glyceraldehyde-3-phos 100.0 0 0 990.8 25.0 329 1-331 1-332 (343)
3 PTZ00023 glyceraldehyde-3-phos 100.0 0 0 989.0 25.2 329 1-331 1-335 (337)
4 PRK13535 erythrose 4-phosphate 100.0 0 0 988.7 24.8 331 2-332 1-335 (336)
5 PRK07403 glyceraldehyde-3-phos 100.0 0 0 981.8 25.3 330 2-331 1-334 (337)
6 PRK08955 glyceraldehyde-3-phos 100.0 0 0 979.3 25.7 329 1-331 1-332 (333)
7 PRK08289 glyceraldehyde-3-phos 100.0 0 0 897.3 24.0 329 4-333 131-474 (479)
8 COG0057 GapA Glyceraldehyde-3- 100.0 0 0 856.6 23.6 330 2-332 1-333 (335)
9 TIGR01532 E4PD_g-proteo D-eryt 100.0 0 0 790.7 12.5 321 4-324 1-334 (334)
10 KOG0657 consensus 100.0 0 0 621.1 8.9 280 13-331 1-284 (285)
11 pfam02800 Gp_dh_C Glyceraldehy 100.0 0 0 427.7 9.3 157 156-312 1-158 (158)
12 pfam00044 Gp_dh_N Glyceraldehy 100.0 0 0 390.6 12.5 147 3-151 1-150 (150)
13 smart00846 Gp_dh_N Glyceraldeh 100.0 0 0 382.2 12.5 147 3-151 1-149 (149)
14 PRK04207 glyceraldehyde-3-phos 100.0 7.2E-34 1.8E-38 242.1 11.3 237 1-264 1-246 (338)
15 PRK08040 putative semialdehyde 99.7 1.1E-17 2.8E-22 136.2 10.2 294 3-331 5-333 (337)
16 PRK06598 aspartate-semialdehyd 99.7 1.8E-16 4.5E-21 128.3 16.1 299 1-331 1-347 (348)
17 PRK05671 aspartate-semialdehyd 99.7 3.6E-16 9.1E-21 126.3 16.5 294 3-331 5-333 (336)
18 PRK06728 aspartate-semialdehyd 99.7 1.7E-16 4.2E-21 128.5 14.3 295 3-331 6-343 (347)
19 PRK06901 aspartate-semialdehyd 99.7 1.7E-15 4.2E-20 121.9 16.1 292 3-330 5-319 (323)
20 COG0136 Asd Aspartate-semialde 99.7 1.3E-15 3.3E-20 122.6 14.4 296 2-328 1-332 (334)
21 TIGR01296 asd_B aspartate-semi 99.5 1.2E-13 3E-18 109.8 8.9 233 4-264 1-281 (350)
22 PRK08664 aspartate-semialdehyd 99.4 4E-11 1E-15 93.3 15.6 303 2-331 3-345 (350)
23 PRK00436 argC N-acetyl-gamma-g 99.3 1.9E-10 4.7E-15 88.9 14.6 298 2-332 1-332 (345)
24 TIGR00978 asd_EA aspartate-sem 99.0 3.9E-09 9.9E-14 80.3 11.1 260 3-292 1-302 (358)
25 TIGR01546 GAPDH-II_archae glyc 98.4 3.7E-07 9.5E-12 67.3 5.6 242 5-277 1-251 (335)
26 PRK11863 N-acetyl-gamma-glutam 98.3 0.00028 7.2E-09 48.5 18.4 282 1-330 1-306 (314)
27 COG0002 ArgC Acetylglutamate s 98.2 0.00017 4.4E-09 49.9 14.8 291 1-329 1-333 (349)
28 PRK00048 dihydrodipicolinate r 98.0 1.3E-05 3.4E-10 57.2 6.3 161 1-192 1-165 (265)
29 PRK13304 L-aspartate dehydroge 98.0 2.8E-05 7.2E-10 55.0 6.8 94 2-122 1-94 (265)
30 PRK13301 putative L-aspartate 97.9 3E-05 7.8E-10 54.8 6.4 147 1-181 1-150 (267)
31 PRK13303 L-aspartate dehydroge 97.9 2.9E-05 7.4E-10 54.9 6.2 139 2-179 1-147 (265)
32 PRK13302 putative L-aspartate 97.8 9.8E-05 2.5E-09 51.5 7.0 138 2-179 6-150 (271)
33 TIGR01921 DAP-DH diaminopimela 97.8 7.5E-05 1.9E-09 52.2 6.2 233 1-294 1-254 (326)
34 PRK08374 homoserine dehydrogen 97.5 0.00025 6.4E-09 48.8 6.0 149 1-167 1-157 (316)
35 PRK06270 homoserine dehydrogen 97.5 0.00049 1.2E-08 46.9 7.4 152 1-177 1-186 (342)
36 COG0289 DapB Dihydrodipicolina 97.4 0.00065 1.7E-08 46.1 6.9 159 1-192 1-165 (266)
37 pfam01113 DapB_N Dihydrodipico 97.3 0.00081 2.1E-08 45.5 6.5 93 3-118 1-94 (122)
38 TIGR03215 ac_ald_DH_ac acetald 97.3 0.0053 1.3E-07 40.2 10.5 219 2-265 1-223 (285)
39 COG0460 ThrA Homoserine dehydr 97.3 0.00053 1.4E-08 46.7 5.3 101 1-122 2-113 (333)
40 pfam03447 NAD_binding_3 Homose 97.1 0.0013 3.4E-08 44.1 5.5 85 9-119 1-87 (116)
41 PRK08300 acetaldehyde dehydrog 97.1 0.003 7.6E-08 41.8 7.2 221 3-265 5-230 (298)
42 COG1712 Predicted dinucleotide 97.0 0.0024 6.1E-08 42.4 6.4 150 3-187 1-154 (255)
43 PRK10206 putative dehydrogenas 96.7 0.0089 2.3E-07 38.7 7.4 97 1-124 1-99 (345)
44 PRK06392 homoserine dehydrogen 96.5 0.0094 2.4E-07 38.5 6.1 160 3-178 1-178 (326)
45 pfam01408 GFO_IDH_MocA Oxidore 96.4 0.014 3.7E-07 37.3 6.9 95 3-124 1-96 (120)
46 pfam01118 Semialdhyde_dh Semia 96.4 0.004 1E-07 40.9 4.0 112 4-139 1-118 (121)
47 PRK06349 homoserine dehydrogen 96.4 0.01 2.6E-07 38.3 5.7 93 2-122 3-104 (432)
48 KOG4777 consensus 96.2 0.011 2.7E-07 38.2 5.3 241 1-264 1-277 (361)
49 PRK11579 putative oxidoreducta 96.0 0.04 1E-06 34.4 7.3 93 2-124 4-98 (346)
50 TIGR00036 dapB dihydrodipicoli 96.0 0.009 2.3E-07 38.6 3.9 34 2-36 1-35 (281)
51 PTZ00079 NADP-specific glutama 95.8 0.072 1.8E-06 32.7 8.0 104 3-121 253-368 (469)
52 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.11 2.8E-06 31.6 8.2 104 3-121 39-154 (254)
53 COG4091 Predicted homoserine d 95.6 0.037 9.5E-07 34.6 5.7 92 2-101 17-113 (438)
54 PRK09414 glutamate dehydrogena 95.5 0.14 3.7E-06 30.8 8.5 30 4-36 231-260 (446)
55 TIGR01850 argC N-acetyl-gamma- 95.5 0.24 6.2E-06 29.3 10.0 234 3-273 1-289 (361)
56 PRK06813 homoserine dehydrogen 95.1 0.032 8.2E-07 35.0 4.1 37 1-37 1-44 (341)
57 TIGR03366 HpnZ_proposed putati 95.0 0.19 4.9E-06 30.0 8.0 140 4-168 123-263 (280)
58 PRK13243 glyoxylate reductase; 94.9 0.074 1.9E-06 32.6 5.6 18 1-20 1-18 (333)
59 COG0673 MviM Predicted dehydro 94.9 0.26 6.7E-06 29.1 8.3 98 1-124 2-101 (342)
60 COG0569 TrkA K+ transport syst 94.6 0.2 5.1E-06 29.8 7.2 126 3-159 1-131 (225)
61 pfam02774 Semialdhyde_dhC Semi 94.6 0.047 1.2E-06 33.9 3.9 99 160-262 1-114 (167)
62 PRK07574 formate dehydrogenase 94.5 0.062 1.6E-06 33.2 4.3 16 221-236 244-259 (385)
63 PRK11880 pyrroline-5-carboxyla 94.2 0.21 5.4E-06 29.7 6.6 46 1-48 1-46 (267)
64 CHL00194 ycf39 Ycf39; Provisio 94.0 0.38 9.8E-06 28.0 7.5 98 3-126 1-115 (319)
65 pfam02826 2-Hacid_dh_C D-isome 93.9 0.079 2E-06 32.5 3.9 30 3-35 37-66 (176)
66 cd05211 NAD_bind_Glu_Leu_Phe_V 93.8 0.53 1.3E-05 27.1 8.0 83 3-108 24-117 (217)
67 PRK12480 D-lactate dehydrogena 93.6 0.11 2.8E-06 31.5 4.2 49 2-52 1-49 (330)
68 PRK13581 D-3-phosphoglycerate 93.6 0.19 4.8E-06 30.0 5.4 29 3-34 139-167 (524)
69 PRK06436 glycerate dehydrogena 93.5 0.13 3.4E-06 31.0 4.5 30 3-35 123-152 (303)
70 PRK06487 glycerate dehydrogena 93.5 0.13 3.4E-06 30.9 4.5 12 225-236 197-208 (317)
71 COG3804 Uncharacterized conser 93.3 0.13 3.3E-06 31.0 4.2 38 1-40 1-38 (350)
72 pfam03435 Saccharop_dh Sacchar 93.2 0.27 6.9E-06 29.0 5.7 98 5-122 1-100 (384)
73 PRK02472 murD UDP-N-acetylmura 93.1 0.52 1.3E-05 27.1 7.0 42 3-48 10-54 (450)
74 smart00859 Semialdhyde_dh Semi 93.1 0.23 6E-06 29.4 5.1 111 4-139 1-120 (122)
75 KOG2741 consensus 93.0 0.18 4.5E-06 30.2 4.4 214 1-245 5-233 (351)
76 PRK01710 murD UDP-N-acetylmura 92.8 0.73 1.9E-05 26.1 7.4 29 3-34 15-43 (458)
77 COG1052 LdhA Lactate dehydroge 92.7 0.22 5.7E-06 29.5 4.7 28 4-34 148-175 (324)
78 PRK11790 D-3-phosphoglycerate 92.6 0.18 4.6E-06 30.1 4.1 28 3-33 152-179 (409)
79 PRK06932 glycerate dehydrogena 92.5 0.13 3.4E-06 31.0 3.3 43 195-237 164-209 (314)
80 COG0111 SerA Phosphoglycerate 92.2 0.26 6.7E-06 29.1 4.5 31 3-36 143-173 (324)
81 PRK08605 D-lactate dehydrogena 92.0 0.27 6.9E-06 29.0 4.4 48 2-51 1-48 (332)
82 PRK04308 murD UDP-N-acetylmura 91.8 1.1 2.8E-05 25.0 7.3 40 3-46 6-46 (445)
83 cd01483 E1_enzyme_family Super 91.5 0.12 3.1E-06 31.3 2.1 115 4-121 1-121 (143)
84 TIGR03451 mycoS_dep_FDH mycoth 91.3 0.74 1.9E-05 26.1 6.0 16 251-266 334-349 (358)
85 PRK09496 trkA potassium transp 90.8 0.5 1.3E-05 27.2 4.7 40 3-47 1-40 (455)
86 PRK08507 prephenate dehydrogen 90.7 1.5 3.8E-05 24.1 7.9 44 3-49 1-44 (275)
87 COG2344 AT-rich DNA-binding pr 90.7 0.17 4.3E-06 30.3 2.2 101 2-128 84-185 (211)
88 PRK01368 murD UDP-N-acetylmura 90.5 1.2 3E-05 24.8 6.3 32 3-38 7-38 (450)
89 PRK03815 murD UDP-N-acetylmura 90.4 0.67 1.7E-05 26.4 5.0 22 3-24 1-22 (401)
90 PRK03369 murD UDP-N-acetylmura 90.1 1.7 4.2E-05 23.8 7.1 30 3-36 13-42 (487)
91 pfam00208 ELFV_dehydrog Glutam 89.9 1.7 4.4E-05 23.7 7.6 32 3-37 33-64 (237)
92 PRK01438 murD UDP-N-acetylmura 89.7 1.3 3.4E-05 24.5 6.1 31 3-36 15-45 (481)
93 cd01487 E1_ThiF_like E1_ThiF_l 89.6 0.5 1.3E-05 27.2 3.8 155 4-163 1-165 (174)
94 KOG0069 consensus 89.5 0.29 7.5E-06 28.7 2.7 21 3-23 163-183 (336)
95 cd01076 NAD_bind_1_Glu_DH NAD( 89.5 1.9 4.8E-05 23.5 8.3 32 3-37 32-63 (227)
96 PRK04663 murD UDP-N-acetylmura 89.4 1.9 4.9E-05 23.4 7.5 87 2-115 7-94 (438)
97 PRK07417 arogenate dehydrogena 89.0 2 5.2E-05 23.3 7.9 137 2-147 1-139 (280)
98 PRK05808 3-hydroxybutyryl-CoA 88.4 0.56 1.4E-05 26.9 3.4 84 1-99 1-92 (282)
99 PRK00257 erythronate-4-phospha 87.9 0.89 2.3E-05 25.6 4.2 31 3-37 117-147 (379)
100 PRK11559 garR tartronate semia 87.7 1.5 3.8E-05 24.1 5.3 136 2-146 1-151 (295)
101 pfam03446 NAD_binding_2 NAD bi 87.6 0.89 2.3E-05 25.6 4.1 126 2-142 1-147 (163)
102 COG1063 Tdh Threonine dehydrog 87.3 2.6 6.5E-05 22.6 6.6 104 4-126 171-275 (350)
103 PRK03562 glutathione-regulated 87.2 1.3 3.3E-05 24.5 4.7 41 4-49 401-441 (615)
104 PRK09466 metL bifunctional asp 86.9 2.7 6.9E-05 22.4 6.3 94 2-115 458-567 (810)
105 PRK10669 putative cation:proto 86.9 2 5.1E-05 23.3 5.5 103 5-119 420-534 (558)
106 PRK03659 glutathione-regulated 86.4 1.8 4.7E-05 23.5 5.1 41 4-49 402-442 (602)
107 PRK08229 2-dehydropantoate 2-r 86.3 1.5 3.8E-05 24.1 4.6 90 1-107 1-91 (341)
108 COG1748 LYS9 Saccharopine dehy 86.0 3 7.6E-05 22.1 6.4 99 2-122 1-101 (389)
109 COG0345 ProC Pyrroline-5-carbo 86.0 3 7.7E-05 22.1 6.3 230 2-264 1-257 (266)
110 pfam02629 CoA_binding CoA bind 85.8 1.3 3.4E-05 24.5 4.2 91 3-122 4-95 (96)
111 TIGR02853 spore_dpaA dipicolin 85.8 1.1 2.8E-05 25.0 3.8 78 4-88 154-234 (288)
112 COG0771 MurD UDP-N-acetylmuram 85.7 2.5 6.5E-05 22.6 5.6 87 2-115 7-95 (448)
113 TIGR01087 murD UDP-N-acetylmur 85.6 1.9 4.8E-05 23.5 4.8 90 4-118 1-94 (476)
114 pfam02254 TrkA_N TrkA-N domain 85.1 2.1 5.2E-05 23.2 4.9 94 5-122 1-96 (115)
115 KOG1203 consensus 84.6 3.5 8.8E-05 21.7 6.6 163 3-184 80-248 (411)
116 COG0287 TyrA Prephenate dehydr 84.6 1.9 4.9E-05 23.4 4.5 24 1-24 2-25 (279)
117 PRK07634 pyrroline-5-carboxyla 83.7 3.8 9.7E-05 21.5 6.3 45 1-46 1-48 (245)
118 PRK05396 tdh L-threonine 3-deh 83.1 3.8 9.6E-05 21.5 5.5 16 250-265 315-330 (341)
119 PTZ00117 malate dehydrogenase; 83.1 2.4 6E-05 22.8 4.5 148 2-180 1-169 (313)
120 PRK06928 pyrroline-5-carboxyla 82.9 4.1 0.0001 21.3 6.5 46 2-48 1-47 (275)
121 COG2085 Predicted dinucleotide 81.8 4.5 0.00011 21.0 5.9 93 2-122 1-93 (211)
122 PRK01390 murD UDP-N-acetylmura 81.6 4.5 0.00012 21.0 7.6 71 3-104 10-80 (457)
123 pfam06115 DUF956 Domain of unk 81.5 0.58 1.5E-05 26.8 0.9 41 63-103 23-69 (118)
124 PRK04690 murD UDP-N-acetylmura 81.2 4.7 0.00012 20.9 6.5 86 3-115 9-95 (468)
125 PRK12491 pyrroline-5-carboxyla 80.8 4.9 0.00012 20.8 6.4 45 1-47 1-46 (272)
126 PRK08306 dipicolinate synthase 80.2 3 7.7E-05 22.1 4.2 18 279-296 222-241 (296)
127 PRK08644 thiamine biosynthesis 80.0 0.75 1.9E-05 26.1 1.0 116 3-121 28-148 (209)
128 cd05294 LDH-like_MDH_nadp A la 79.6 5.3 0.00013 20.5 7.0 148 3-174 1-169 (309)
129 KOG0068 consensus 79.4 1.4 3.6E-05 24.3 2.2 31 4-37 148-178 (406)
130 cd00757 ThiF_MoeB_HesA_family 79.2 1.6 4.1E-05 23.9 2.5 115 3-122 22-143 (228)
131 COG1023 Gnd Predicted 6-phosph 78.6 5.3 0.00014 20.5 5.0 162 3-178 1-187 (300)
132 PRK12475 thiamine/molybdopteri 78.1 2 5E-05 23.3 2.7 184 3-190 25-232 (337)
133 PRK00683 murD UDP-N-acetylmura 77.9 5.9 0.00015 20.2 6.1 31 2-36 3-33 (418)
134 pfam00899 ThiF ThiF family. Th 77.8 1.9 4.9E-05 23.4 2.6 105 3-110 2-112 (134)
135 pfam03807 F420_oxidored NADP o 77.4 5.9 0.00015 20.2 5.0 41 4-48 1-41 (93)
136 PRK03806 murD UDP-N-acetylmura 77.4 6.1 0.00016 20.1 7.1 31 3-37 7-37 (438)
137 PRK06476 pyrroline-5-carboxyla 77.3 6.2 0.00016 20.1 6.1 107 3-122 1-116 (255)
138 pfam05368 NmrA NmrA-like famil 76.8 6.3 0.00016 20.0 6.3 93 5-121 1-102 (232)
139 pfam02670 DXP_reductoisom 1-de 76.6 6.4 0.00016 20.0 8.4 108 5-120 1-120 (129)
140 pfam01488 Shikimate_DH Shikima 76.0 6.7 0.00017 19.9 7.0 100 3-129 13-116 (134)
141 PRK05472 redox-sensing transcr 75.7 2.2 5.5E-05 23.1 2.4 97 2-124 84-181 (211)
142 PRK07502 cyclohexadienyl dehyd 75.4 6.9 0.00018 19.8 7.9 154 1-159 5-163 (307)
143 PRK07679 pyrroline-5-carboxyla 74.4 7.3 0.00019 19.6 6.6 46 2-48 3-49 (279)
144 pfam02737 3HCDH_N 3-hydroxyacy 74.1 4.4 0.00011 21.0 3.6 81 4-98 1-87 (180)
145 PRK08223 hypothetical protein; 73.6 3 7.6E-05 22.2 2.6 126 3-132 28-162 (287)
146 PRK05708 2-dehydropantoate 2-r 73.2 7.6 0.00019 19.5 4.6 88 1-107 1-88 (305)
147 PRK06035 3-hydroxyacyl-CoA deh 72.6 3 7.8E-05 22.1 2.5 33 1-37 1-34 (291)
148 TIGR03201 dearomat_had 6-hydro 72.5 8.1 0.00021 19.3 9.5 13 253-265 326-338 (349)
149 PRK12490 6-phosphogluconate de 72.3 6.2 0.00016 20.1 4.0 162 3-178 1-186 (298)
150 KOG2250 consensus 72.1 8.3 0.00021 19.2 8.0 31 3-36 252-282 (514)
151 cd00755 YgdL_like Family of ac 71.5 4.5 0.00011 21.0 3.1 116 3-120 12-133 (231)
152 cd01484 E1-2_like Ubiquitin ac 71.1 4.1 0.00011 21.2 2.9 128 4-135 1-139 (234)
153 PRK09117 consensus 70.0 4.4 0.00011 21.0 2.8 28 3-33 3-30 (282)
154 PRK02006 murD UDP-N-acetylmura 69.7 9.4 0.00024 18.9 6.4 41 3-47 8-49 (501)
155 TIGR00007 TIGR00007 phosphorib 69.3 1.8 4.6E-05 23.6 0.8 37 90-126 72-109 (241)
156 pfam00107 ADH_zinc_N Zinc-bind 69.2 5.8 0.00015 20.3 3.3 70 89-163 59-129 (131)
157 COG4569 MhpF Acetaldehyde dehy 68.6 9.9 0.00025 18.7 7.7 220 3-265 5-230 (310)
158 PRK07688 thiamine/molybdopteri 68.5 5.2 0.00013 20.6 2.9 185 3-190 25-233 (339)
159 PRK00141 murD UDP-N-acetylmura 68.3 10 0.00025 18.7 6.5 31 3-36 18-48 (476)
160 PRK07680 late competence prote 68.1 10 0.00026 18.7 6.2 43 3-47 1-44 (273)
161 PRK06223 malate dehydrogenase; 67.8 10 0.00026 18.6 4.7 149 3-180 1-169 (312)
162 PRK13587 1-(5-phosphoribosyl)- 67.5 3.1 7.9E-05 22.0 1.6 37 90-126 75-112 (234)
163 PRK09880 L-idonate 5-dehydroge 67.1 11 0.00027 18.6 8.4 17 206-222 240-256 (343)
164 COG0039 Mdh Malate/lactate deh 67.0 6.5 0.00017 19.9 3.2 150 3-180 1-169 (313)
165 PRK05690 molybdopterin biosynt 66.7 5.3 0.00013 20.5 2.7 105 3-110 33-143 (245)
166 PRK05597 molybdopterin biosynt 64.2 8 0.0002 19.4 3.2 178 3-184 29-231 (355)
167 PRK05600 thiamine biosynthesis 63.0 5.8 0.00015 20.3 2.3 181 3-187 42-250 (370)
168 PRK02318 mannitol-1-phosphate 62.9 9.1 0.00023 19.0 3.3 85 3-99 1-90 (381)
169 PRK07819 3-hydroxybutyryl-CoA 61.4 7.3 0.00019 19.6 2.6 83 3-99 3-91 (284)
170 TIGR00872 gnd_rel 6-phosphoglu 60.9 11 0.00029 18.4 3.5 48 3-55 1-49 (341)
171 PRK08328 hypothetical protein; 58.8 5.2 0.00013 20.6 1.5 110 3-115 28-145 (230)
172 PRK06249 2-dehydropantoate 2-r 58.7 15 0.00038 17.6 5.6 80 3-103 6-86 (313)
173 PRK07411 hypothetical protein; 58.3 5.7 0.00015 20.3 1.6 180 3-186 39-243 (390)
174 PRK09601 translation-associate 57.9 10 0.00026 18.7 2.8 47 1-48 1-59 (364)
175 pfam03721 UDPG_MGDP_dh_N UDP-g 57.6 16 0.0004 17.5 4.3 29 3-34 1-29 (185)
176 PRK09599 6-phosphogluconate de 56.7 16 0.00041 17.4 5.6 162 3-178 1-188 (301)
177 PRK13597 imidazole glycerol ph 56.6 4.8 0.00012 20.8 1.0 152 89-262 73-244 (252)
178 PRK07878 molybdopterin biosynt 56.4 5.9 0.00015 20.2 1.4 177 3-184 43-249 (392)
179 pfam02492 cobW CobW/HypB/UreG, 56.3 16 0.00042 17.3 5.2 92 5-101 3-97 (174)
180 COG2910 Putative NADH-flavin r 56.0 17 0.00042 17.3 5.8 71 3-101 1-74 (211)
181 TIGR00617 rpa1 replication fac 55.9 2 5.1E-05 23.3 -1.1 11 303-313 387-397 (671)
182 PRK07531 bifunctional 3-hydrox 54.6 17 0.00044 17.1 6.2 119 1-124 1-139 (489)
183 COG1062 AdhC Zn-dependent alco 54.2 18 0.00045 17.1 6.4 100 4-123 188-288 (366)
184 pfam00056 Ldh_1_N lactate/mala 54.2 18 0.00045 17.1 4.7 83 3-105 1-85 (142)
185 PRK05447 1-deoxy-D-xylulose 5- 53.5 18 0.00046 17.0 6.5 46 2-48 1-47 (379)
186 PRK09602 translation-associate 52.6 14 0.00036 17.7 2.8 25 1-25 1-25 (396)
187 TIGR00089 TIGR00089 RNA modifi 52.4 19 0.00048 16.9 3.6 110 104-264 189-303 (455)
188 cd01339 LDH-like_MDH L-lactate 52.2 19 0.00048 16.9 4.0 145 5-180 1-166 (300)
189 PRK11537 putative GTP-binding 51.8 19 0.00049 16.9 4.8 96 6-110 8-112 (317)
190 PTZ00325 malate dehydrogenase; 51.3 11 0.00028 18.5 2.1 149 2-180 1-171 (313)
191 PRK00748 1-(5-phosphoribosyl)- 50.4 8 0.0002 19.3 1.3 85 89-179 71-169 (241)
192 PRK10537 voltage-gated potassi 49.9 21 0.00052 16.7 4.1 27 5-32 207-233 (356)
193 cd05291 HicDH_like L-2-hydroxy 49.8 13 0.00034 17.9 2.3 148 4-180 2-168 (306)
194 PRK10309 galactitol-1-phosphat 49.5 21 0.00053 16.6 7.5 13 252-264 322-334 (347)
195 PRK13586 1-(5-phosphoribosyl)- 49.3 6.5 0.00017 19.9 0.7 86 90-179 71-169 (231)
196 PRK05211 consensus 48.8 8.5 0.00022 19.2 1.2 147 89-262 63-241 (248)
197 cd02110 SO_family_Moco_dimer S 48.5 18 0.00046 17.0 2.9 19 125-143 126-144 (317)
198 PRK02705 murD UDP-N-acetylmura 48.0 22 0.00056 16.5 7.0 28 6-37 4-31 (459)
199 PRK01033 imidazole glycerol ph 48.0 8.1 0.00021 19.3 1.0 90 89-179 72-176 (253)
200 PRK06199 ornithine cyclodeamin 47.9 22 0.00056 16.5 5.9 77 3-100 156-234 (379)
201 COG0106 HisA Phosphoribosylfor 47.5 11 0.00028 18.5 1.6 37 90-126 74-111 (241)
202 PRK08762 molybdopterin biosynt 47.3 11 0.00027 18.5 1.5 117 3-124 139-262 (379)
203 cd01075 NAD_bind_Leu_Phe_Val_D 47.2 23 0.00058 16.4 7.4 38 3-45 29-66 (200)
204 KOG2380 consensus 47.1 22 0.00055 16.5 3.1 23 2-24 52-74 (480)
205 PRK02747 consensus 46.3 10 0.00025 18.7 1.3 152 89-262 72-249 (257)
206 COG0334 GdhA Glutamate dehydro 45.9 24 0.0006 16.3 7.7 106 12-121 119-238 (411)
207 COG1179 Dinucleotide-utilizing 45.2 17 0.00043 17.2 2.3 53 79-131 111-164 (263)
208 PRK13231 nitrogenase reductase 44.7 13 0.00032 18.1 1.6 221 1-262 1-261 (264)
209 TIGR01202 bchC Chlorophyll syn 44.3 25 0.00064 16.1 4.0 114 3-150 156-272 (325)
210 PRK03803 murD UDP-N-acetylmura 44.3 25 0.00064 16.1 7.1 37 5-45 10-47 (448)
211 pfam06408 consensus 43.9 25 0.00065 16.1 3.0 21 4-24 3-23 (471)
212 PRK02621 consensus 43.5 11 0.00028 18.5 1.1 152 89-262 72-247 (254)
213 TIGR01745 asd_gamma aspartate- 43.4 10 0.00026 18.7 0.9 258 4-288 2-325 (367)
214 COG1064 AdhP Zn-dependent alco 43.2 26 0.00066 16.0 7.6 18 250-267 311-328 (339)
215 cd04731 HisF The cyclase subun 43.2 12 0.00031 18.2 1.3 90 89-179 69-173 (243)
216 PRK02145 consensus 41.4 13 0.00032 18.1 1.2 152 89-262 73-250 (257)
217 PRK04281 consensus 41.4 12 0.00031 18.2 1.1 152 89-262 72-247 (254)
218 TIGR02129 hisA_euk phosphoribo 41.3 10 0.00027 18.6 0.7 96 38-153 43-150 (274)
219 TIGR03572 WbuZ glycosyl amidat 41.1 12 0.0003 18.3 1.0 90 89-179 72-177 (232)
220 TIGR02884 spore_pdaA delta-lac 40.9 13 0.00032 18.1 1.1 28 301-328 31-61 (225)
221 PRK10083 putative dehydrogenas 40.4 29 0.00073 15.7 9.4 15 250-264 310-324 (339)
222 cd00321 SO_family_Moco Sulfite 39.8 18 0.00046 17.1 1.7 86 57-143 9-128 (156)
223 PRK08268 3-hydroxybutyryl-CoA 39.7 29 0.00075 15.7 4.2 29 3-34 4-32 (503)
224 KOG1120 consensus 39.6 18 0.00045 17.1 1.7 55 18-74 40-96 (134)
225 cd04887 ACT_MalLac-Enz ACT_Mal 39.6 29 0.00074 15.7 2.8 58 205-262 6-63 (74)
226 KOG0022 consensus 39.2 30 0.00076 15.6 3.5 25 243-267 343-367 (375)
227 PRK03220 consensus 39.2 12 0.0003 18.3 0.7 156 89-262 73-251 (257)
228 PRK02083 imidazole glycerol ph 38.9 16 0.0004 17.4 1.3 153 90-262 73-246 (253)
229 PRK04128 1-(5-phosphoribosyl)- 38.6 19 0.00048 16.9 1.7 35 89-123 71-105 (228)
230 TIGR00624 tag DNA-3-methyladen 38.5 23 0.00059 16.3 2.2 40 173-221 115-154 (185)
231 COG0409 HypD Hydrogenase matur 38.2 29 0.00073 15.7 2.6 131 38-190 72-212 (364)
232 PRK05665 amidotransferase; Pro 37.4 32 0.00081 15.4 3.4 66 1-88 1-77 (240)
233 PRK00994 F420-dependent methyl 37.4 32 0.00081 15.4 3.5 45 1-45 1-50 (276)
234 PRK13585 1-(5-phosphoribosyl)- 37.3 18 0.00046 17.0 1.4 36 90-125 74-110 (240)
235 PRK06522 2-dehydropantoate 2-r 37.3 32 0.00082 15.4 8.3 87 3-108 1-87 (307)
236 PRK00830 consensus 37.2 13 0.00034 17.9 0.8 152 89-262 76-266 (273)
237 PRK13185 chlL protochlorophyll 37.1 32 0.00082 15.4 2.7 208 1-261 1-266 (269)
238 TIGR02033 D-hydantoinase dihyd 36.4 25 0.00063 16.2 2.0 59 91-154 264-328 (466)
239 PRK01659 consensus 36.3 15 0.00039 17.5 1.0 156 89-262 72-246 (252)
240 smart00517 PolyA C-terminal do 35.5 12 0.00032 18.1 0.4 22 215-236 17-38 (64)
241 pfam02719 Polysacc_synt_2 Poly 35.3 34 0.00087 15.2 3.7 23 9-31 6-28 (280)
242 cd01489 Uba2_SUMO Ubiquitin ac 35.1 35 0.00088 15.2 2.8 143 4-152 1-156 (312)
243 TIGR02025 BchH magnesium chela 34.8 14 0.00035 17.8 0.5 69 81-152 1067-1150(1384)
244 COG0012 Predicted GTPase, prob 34.6 35 0.0009 15.1 4.3 47 1-48 1-59 (372)
245 cd04732 HisA HisA. Phosphorib 34.5 22 0.00057 16.4 1.5 37 89-125 71-108 (234)
246 cd03112 CobW_like The function 34.2 36 0.00091 15.1 4.8 93 6-107 4-105 (158)
247 PRK12688 flagellin; Reviewed 34.0 36 0.00092 15.1 2.9 50 51-100 325-379 (888)
248 TIGR01408 Ube1 ubiquitin-activ 33.8 15 0.00038 17.6 0.5 52 196-250 484-535 (1033)
249 PTZ00142 6-phosphogluconate de 33.8 36 0.00093 15.0 5.3 252 3-266 6-353 (474)
250 TIGR00763 lon ATP-dependent pr 33.6 30 0.00075 15.6 2.0 12 40-51 28-39 (941)
251 PRK08655 prephenate dehydrogen 33.5 37 0.00094 15.0 3.9 149 3-155 1-208 (441)
252 KOG0455 consensus 33.4 37 0.00094 15.0 3.6 107 3-125 4-121 (364)
253 PRK12464 1-deoxy-D-xylulose 5- 33.0 37 0.00095 15.0 7.2 40 8-48 2-42 (392)
254 PRK10070 glycine betaine trans 32.9 38 0.00096 15.0 3.7 37 1-37 1-47 (400)
255 PRK10787 DNA-binding ATP-depen 32.5 21 0.00054 16.6 1.1 49 255-305 405-456 (784)
256 TIGR02429 pcaI_scoA_fam 3-oxoa 32.2 38 0.00098 14.9 4.9 50 4-53 21-72 (222)
257 cd02114 bact_SorA_Moco sulfite 32.0 39 0.00099 14.9 3.0 42 59-101 59-104 (367)
258 PTZ00082 L-lactate dehydrogena 31.8 39 0.001 14.8 7.4 143 3-173 8-176 (322)
259 cd04723 HisA_HisF Phosphoribos 31.7 22 0.00055 16.5 1.1 37 89-125 76-113 (233)
260 pfam00658 PABP Poly-adenylate 31.2 13 0.00032 18.1 -0.2 22 215-236 27-48 (71)
261 TIGR02349 DnaJ_bact chaperone 31.2 28 0.00072 15.8 1.6 19 91-109 198-220 (386)
262 cd05293 LDH_1 A subgroup of L- 31.0 40 0.001 14.8 4.0 148 3-180 4-171 (312)
263 cd05292 LDH_2 A subgroup of L- 30.9 40 0.001 14.7 4.7 144 3-174 1-164 (308)
264 pfam03858 Crust_neuro_H Crusta 30.8 22 0.00057 16.4 1.0 12 8-19 4-15 (41)
265 TIGR03026 NDP-sugDHase nucleot 30.7 41 0.001 14.7 4.2 29 3-34 1-29 (411)
266 COG0621 MiaB 2-methylthioadeni 30.7 41 0.001 14.7 2.7 54 130-189 194-247 (437)
267 cd01337 MDH_glyoxysomal_mitoch 30.5 41 0.001 14.7 4.4 148 3-180 1-171 (310)
268 cd00704 MDH Malate dehydrogena 29.7 42 0.0011 14.6 4.4 147 3-175 1-175 (323)
269 KOG4169 consensus 29.1 43 0.0011 14.5 3.4 39 6-47 10-49 (261)
270 COG0523 Putative GTPases (G3E 29.1 43 0.0011 14.5 5.0 98 6-111 5-107 (323)
271 TIGR01851 argC_other N-acetyl- 28.9 44 0.0011 14.5 4.2 243 3-311 2-279 (314)
272 pfam00977 His_biosynth Histidi 28.8 28 0.00071 15.8 1.2 36 90-125 72-108 (229)
273 KOG1403 consensus 28.6 24 0.00062 16.2 0.9 24 27-50 100-124 (452)
274 COG5495 Uncharacterized conser 28.6 44 0.0011 14.5 2.5 102 3-114 11-115 (289)
275 TIGR03589 PseB UDP-N-acetylglu 27.8 46 0.0012 14.4 2.3 22 4-25 6-28 (324)
276 cd01485 E1-1_like Ubiquitin ac 27.8 34 0.00087 15.2 1.6 105 3-110 20-134 (198)
277 cd05213 NAD_bind_Glutamyl_tRNA 27.7 46 0.0012 14.4 4.4 98 3-130 179-282 (311)
278 COG0246 MtlD Mannitol-1-phosph 27.6 46 0.0012 14.4 4.5 50 1-53 14-69 (473)
279 TIGR01941 nqrF NADH:ubiquinone 26.3 42 0.0011 14.6 1.8 13 110-123 262-274 (425)
280 KOG3896 consensus 25.8 43 0.0011 14.6 1.8 13 196-208 264-276 (449)
281 cd05290 LDH_3 A subgroup of L- 25.6 50 0.0013 14.2 4.0 143 4-171 1-164 (307)
282 PRK09436 thrA bifunctional asp 23.7 54 0.0014 13.9 4.7 94 2-115 465-573 (817)
283 PRK00421 murC UDP-N-acetylmura 23.4 55 0.0014 13.9 6.6 42 3-48 9-51 (459)
284 PRK01220 malonate decarboxylas 23.2 55 0.0014 13.9 3.6 39 3-42 44-84 (99)
285 PRK09628 oorB 2-oxoglutarate-a 23.0 56 0.0014 13.8 2.1 66 9-74 23-106 (281)
286 TIGR02069 cyanophycinase cyano 22.8 55 0.0014 13.9 1.8 78 68-149 65-187 (297)
287 TIGR01029 rpsG_bact ribosomal 22.7 23 0.00058 16.4 -0.1 26 212-237 62-90 (159)
288 pfam00174 Oxidored_molyb Oxido 22.5 57 0.0015 13.8 3.9 41 60-101 9-52 (156)
289 TIGR02845 spore_V_AD stage V s 22.4 50 0.0013 14.1 1.6 26 270-295 260-286 (331)
290 TIGR00069 hisD histidinol dehy 22.4 45 0.0011 14.5 1.3 86 37-125 37-160 (435)
291 KOG2305 consensus 22.4 35 0.00089 15.2 0.8 117 3-123 4-144 (313)
292 PRK10834 hypothetical protein; 21.9 58 0.0015 13.7 1.8 88 80-176 37-145 (239)
293 COG0466 Lon ATP-dependent Lon 21.9 46 0.0012 14.4 1.3 46 256-303 407-455 (782)
294 PRK04333 50S ribosomal protein 21.1 44 0.0011 14.5 1.1 32 232-263 47-78 (83)
295 PRK08293 3-hydroxybutyryl-CoA 21.0 61 0.0016 13.6 4.5 30 1-33 1-31 (288)
296 COG4253 Uncharacterized protei 21.0 61 0.0016 13.6 3.0 68 60-128 154-222 (278)
297 cd01492 Aos1_SUMO Ubiquitin ac 20.5 63 0.0016 13.5 2.5 105 3-111 22-132 (197)
298 KOG2558 consensus 20.4 45 0.0011 14.4 1.0 23 305-330 361-383 (532)
299 PRK02103 malonate decarboxylas 20.2 63 0.0016 13.5 3.8 40 3-43 48-89 (105)
300 TIGR00461 gcvP glycine dehydro 20.1 64 0.0016 13.4 3.4 77 242-332 422-499 (965)
301 pfam09363 XFP_C XFP C-terminal 20.1 61 0.0015 13.6 1.6 20 89-108 34-53 (203)
No 1
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=100.00 E-value=0 Score=1005.86 Aligned_cols=321 Identities=57% Similarity=0.912 Sum_probs=308.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--CCEEE-EEECCC-CCHHHHHHHHHHCCCCC-------CCCCEEEEECC------C
Q ss_conf 89885668688999999996888--87289-996068-89999998875144125-------56740898365------3
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRR--DDVRI-VAINDL-NSIETMAHLLRYDSVHG-------RFPGEVKIIGD------T 66 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~--~~i~i-vaINd~-~~~~~~~~Ll~yDS~hG-------~~~~~v~~~~~------~ 66 (333)
||||||||||||++||++++.+. +++|+ |+|||. .++++++|||||||+|| +|+++|+..++ .
T Consensus 1 kvgINGFGRIGRlvlR~~~~~~~~g~~~~viv~inD~~~~~~~~ayLlkyDSvhG~~~y~~~~f~~~v~~~~~~~~~~~~ 80 (366)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGSGLDLEVIVAINDLSTDLEKLAYLLKYDSVHGRLAYLYFRFEGEVTVDEDKAEKTNG 80 (366)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHEECCCCCEEEEEECCCCCCCE
T ss_conf 93651478589999999850578897058998314887688999988641235587110312788528883034367416
Q ss_pred CCCCCC--CCCCCCCCCCCCCCC-C--CCCEEEEECCCCCCCCCC--CHHHHCC---CCEEEEECC--CCCC-CEEEEEE
Q ss_conf 001656--542110123333344-6--563278606643332122--0011058---423433036--7887-3489840
Q gi|254780654|r 67 IDVGLG--PIQVTSIRDPQDLPW-G--DVDVAMECTGFFVTQEKA--SLHLSNG---SQRVLVSAP--CKGV-KKTIVYG 133 (333)
Q Consensus 67 l~in~~--~i~i~~~~~p~~i~W-~--~vDiViEcTG~f~~~~~~--~~HL~~G---akkVIiSaP--~kd~-~~tiV~G 133 (333)
|++||+ .+.+.++++|++||| + ++||||||||+|+++++. ++||++| ||||||||| ++++ .||||||
T Consensus 81 l~v~g~~~~~~~~~~~~P~~lpWt~~~~vD~V~EcTG~f~~~~~~~l~~Hl~~G~~gAkKVlisAP~k~~~~~~~t~V~G 160 (366)
T TIGR01534 81 LVVNGKVKVIVVASERDPSDLPWTKALGVDIVIECTGKFRDKEKAALEKHLEAGNPGAKKVLISAPFKSKGDAAPTIVYG 160 (366)
T ss_pred EEECCCEEEEEEEECCCHHHCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEC
T ss_conf 88868045788740478537787126073289958875027625689898636799412689836888888960278866
Q ss_pred CCCCCCC-C-CCEEECCCCCCHHHHHHHHHHHH---HCCCHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 5532122-2-21033057641023466888754---121023221001134532223556654--530001123656464
Q gi|254780654|r 134 VNHQSLN-K-EDKVVSNASCTTNCLVPVVHVLD---KMFGIEKGYMTTVHSYTGDQHVLDAGH--SDLYRSRAAAISMVP 206 (333)
Q Consensus 134 vN~~~~~-~-~~~IiS~aSCTtn~laPvlk~l~---~~~gI~~g~~TTiH~~t~~Q~l~D~~~--~d~Rr~Raa~~niIP 206 (333)
|||+.|+ + +++||||||||||||||++|+|| |+|||+.|+|||||||||||+|+|+|| +|+||+|||++||||
T Consensus 161 VN~~~y~~~~~~~iiSnASCTTNclAP~~kvL~~hfe~FGI~~G~MTTvHsyT~dQ~l~D~~~~~~D~Rr~RAAa~NiIP 240 (366)
T TIGR01534 161 VNHDEYDDPAEERIISNASCTTNCLAPLAKVLDEHFEEFGIVSGLMTTVHSYTNDQNLVDGPHRHKDLRRARAAALNIIP 240 (366)
T ss_pred CCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 77456047888608982555135789999999876510430101699998650871042077688875201300026630
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC---CCCCEEEEEC-CCEEEE
Q ss_conf 531124567777620178710434312335310112343320122067889999874100---0048574225-873544
Q gi|254780654|r 207 TSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEG---DLKNILGYVT-LPLVSV 282 (333)
Q Consensus 207 t~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~---~~~~il~~~~-~~lVS~ 282 (333)
|||||||||++|||+|+|||+|+|+||||||||++||+++|+|++++||||++||+||++ .|+|+|+|++ +|+|||
T Consensus 241 tsTGAAkA~~~VlP~L~GKL~G~A~RVPt~~vS~vdL~~~l~k~~~~~~vnaA~k~a~~~~~~~l~g~lgy~~s~~~VSS 320 (366)
T TIGR01534 241 TSTGAAKAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVVNLEKKVTKEEVNAALKEAAEGSTYLLKGVLGYTESDELVSS 320 (366)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCE
T ss_conf 03468889987435777640178997653895299999733787788999999999848983744461003216544102
Q ss_pred CCCCCCCCEEEECCCCEE--EC--CCEEEEEEEECCCHHHHHHHHH
Q ss_conf 348878621683268464--28--9779999983871467999999
Q gi|254780654|r 283 DFNHTSYSSIFAADQTKV--VS--QNLLRVLVWYDNEWGFSNRMLD 324 (333)
Q Consensus 283 D~ig~~~s~i~D~~~t~v--~~--~~~~Ki~~WYDNEwgYs~rlid 324 (333)
||||+++|+|||+++|++ .+ ++|+|+++||||||||||||+|
T Consensus 321 Dfig~~~ss~vDa~~t~~~~~~~~~~~~Kv~~WYDNE~GYS~r~vd 366 (366)
T TIGR01534 321 DFIGSPYSSIVDATATKVTGLGEDGQLVKVVAWYDNEWGYSNRLVD 366 (366)
T ss_pred ECCCCCCEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCHHHCCC
T ss_conf 0046841068864531464058886079999987055111311149
No 2
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=990.83 Aligned_cols=329 Identities=50% Similarity=0.830 Sum_probs=324.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|+|||||||||||||++||+++++ ++++||||||+.++++++|||||||+||+|+++++..++.|++||++|++++++
T Consensus 1 M~irIgINGFGRIGR~v~R~~~~~--~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~ 78 (343)
T PRK07729 1 MKVRVAINGFGRIGRMVFRQAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKIRLLNNR 78 (343)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEECCCCCC
T ss_conf 967999978886899999999668--998899984899989999975852778988997897199799999750123669
Q ss_pred CCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCC-CEEECCCCCCHHHHH
Q ss_conf 33333446--563278606643332122001105842343303678873489840553212222-103305764102346
Q gi|254780654|r 81 DPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKE-DKVVSNASCTTNCLV 157 (333)
Q Consensus 81 ~p~~i~W~--~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~-~~IiS~aSCTtn~la 157 (333)
+|+++||+ +||+||||||+|++++++++||++||||||||||++|+|+|+||||||++|+++ |+|||+|||||||||
T Consensus 79 dp~~i~W~~~gvD~ViE~TG~f~~~e~a~~Hl~~GakkViiSAP~k~~d~tiV~GVN~~~~~~~~~~IiSnASCTTNclA 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTVISNASCTTNCLA 158 (343)
T ss_pred CHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCEEECCCHHHHHHH
T ss_conf 96778841038849997475567889999888549867998889899974599723555457654838973847988899
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 68887541210232210011345322235566545300011236564645311245677776201787104343123353
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~ 237 (333)
|++|+|||+|||++|+|||||+||++|+++|+||+|+||+|||++|||||+||||+|+++|||+|+|||+|+|+|||||+
T Consensus 159 Pv~kvL~~~fGI~~g~mTTIHa~T~dQ~l~D~~hkD~Rr~Raa~~nIIPtsTGAAkAi~~VlPeL~GKl~G~A~RVPt~~ 238 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 238 (343)
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99999986538018999988615798503678877545563202127856453889998643420787212687057777
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCHH
Q ss_conf 10112343320122067889999874100004857422587354434887862168326846428977999998387146
Q gi|254780654|r 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWG 317 (333)
Q Consensus 238 vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEwg 317 (333)
||++|||++++|++++||||++|++||+++|++||+|++||+||+||+|+++|||||+++|++++++++|+++|||||||
T Consensus 239 vS~vDlt~~l~k~~t~eeIn~~~k~aa~~~l~gil~y~~~plVS~D~~g~~~Ssi~D~~~t~v~~~~~vKv~~WYDNEwG 318 (343)
T PRK07729 239 VSLVDLVVDVKRDVTVEAINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWG 318 (343)
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCHHEEEHHHCEEECCCEEEEEEEECCHHH
T ss_conf 60799999967878799999999998627888867768885311200899922327540088978988999999886599
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 79999999999750
Q gi|254780654|r 318 FSNRMLDTASAMAN 331 (333)
Q Consensus 318 Ys~rlidl~~~ia~ 331 (333)
|||||+|+++||++
T Consensus 319 Ys~R~~dl~~~i~~ 332 (343)
T PRK07729 319 YSCRVVDLVTLVAA 332 (343)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=988.95 Aligned_cols=329 Identities=46% Similarity=0.796 Sum_probs=323.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 961898856686889999999968888728999606-8899999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd-~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|||||||||||||||++||+++++ ++++||+||| ..++++++|||||||+||+|+++++.+++.|++||++|+++++
T Consensus 1 M~ikigINGFGRIGR~v~R~~~~~--~~i~vvaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~ 78 (337)
T PTZ00023 1 MVVKIGINGFGRIGRLVHRASLAR--ENVEVVAINDPFMTPDYIKYLLKYDSVHGSLPCEVSVTSDHLMIGSKKVHLFFE 78 (337)
T ss_pred CCEEEEEECCCHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEECC
T ss_conf 967999956877899999998418--994899978999999999998653678998999789838959999978875056
Q ss_pred CCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 233333446--563278606643332122001105842343303678873489840553212222103305764102346
Q gi|254780654|r 80 RDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLV 157 (333)
Q Consensus 80 ~~p~~i~W~--~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~la 157 (333)
++|+++||+ +||+||||||+|++++++++||++||||||||||++|+++|+||||||++|+++++|||+|||||||||
T Consensus 79 ~dp~~ipW~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~~d~~~t~V~GVN~~~~~~~~~IISnASCTTNclA 158 (337)
T PTZ00023 79 KDPSQIPWGKNDVDVVAECTGVFTSTEKAKLHLKGGAKLVIISAPPSDSTPIYVFGVNHTQYDKSQRIVSNASCTTNCLA 158 (337)
T ss_pred CCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCHHHCCCCCCEEECCCCCCCCHH
T ss_conf 99666992203987899626544688999999876997799768998888679983563434876728965631003003
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 6888754121023221001134532223556654---5300011236564645311245677776201787104343123
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGH---SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVP 234 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~---~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVP 234 (333)
|++|+|||+|||++|+|||||+||++|+++|+|| +||||+|||++|||||+||||+|+++|||||+|||+|+|+|||
T Consensus 159 Pl~kvL~~~fgI~~g~mTTIHsyT~~Q~l~D~~h~~~kD~Rr~Raa~~nIIPtsTgAakAi~~VlPeL~GKl~g~A~RVP 238 (337)
T PTZ00023 159 PLAKVINDNFGIVEGLMTTVHAVTANQLTVDGASRGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 238 (337)
T ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 07987865348678789986346688730457786777545664254178866563889998540530797303689437
Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECC
Q ss_conf 35310112343320122067889999874100004857422587354434887862168326846428977999998387
Q gi|254780654|r 235 TPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDN 314 (333)
Q Consensus 235 t~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDN 314 (333)
|++||++||+++++|++++||||++|++||+++|++||+|++||+||+||+|+++|||||+++|++++++++|+++||||
T Consensus 239 t~~vS~vDlt~~l~k~~s~eein~~~~~aa~~~lkgil~y~~~plVS~Df~g~~~S~i~D~~~t~~~~~~~vKv~~WYDN 318 (337)
T PTZ00023 239 VSDVSVVDLTCRLAKPAKYEEIVLAVKAAAEGPLKGILGYTEDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDN 318 (337)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEEEECC
T ss_conf 87745899999964764289999999998526568868788886012210899941158823479987998999999886
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 14679999999999750
Q gi|254780654|r 315 EWGFSNRMLDTASAMAN 331 (333)
Q Consensus 315 EwgYs~rlidl~~~ia~ 331 (333)
||||||||+|+++||++
T Consensus 319 EwGYs~R~~dla~~i~~ 335 (337)
T PTZ00023 319 EWGYSNRLLDLAVYIFQ 335 (337)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 69999999999999984
No 4
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=988.74 Aligned_cols=331 Identities=47% Similarity=0.821 Sum_probs=324.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968-88872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVES-RRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~-~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
+|||||||||||||++||+++++ .+++++||||||++++++++|||||||+||+|+++++.+++.|.+||++|++++++
T Consensus 1 tikIgINGFGRIGR~v~R~~~e~~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I~~~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEECC
T ss_conf 96999978888999999999866889986999978899989999986422678889997897089799999899999558
Q ss_pred CCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCC-CCEEEEEECCCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 33333446--5632786066433321220011058423433036788-73489840553212222103305764102346
Q gi|254780654|r 81 DPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKG-VKKTIVYGVNHQSLNKEDKVVSNASCTTNCLV 157 (333)
Q Consensus 81 ~p~~i~W~--~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd-~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~la 157 (333)
+|+++||+ ++|+||||||+|++++++++||++||||||||||+++ .|+|+||||||++|+++|+|||+|||||||||
T Consensus 81 dp~~ipW~~~~vD~ViE~TG~f~~~~~a~~Hl~~GakkViiSaP~~~~~d~tiV~GVN~~~~~~~~~IiSnASCTTNclA 160 (336)
T PRK13535 81 DLASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCII 160 (336)
T ss_pred CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHCCCCCEEEECCCCCCCEEE
T ss_conf 94339831158759997043116789999998759856898258876668638961575674866538975753324140
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 68887541210232210011345322235566545300011236564645311245677776201787104343123353
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~ 237 (333)
|++|+|||+|||++|+|||||+||++|+++|++|+|+||+|||++|||||+||||+|+++|||+|+|||+|+|+||||++
T Consensus 161 Pv~kvl~~~fGI~~g~mTTIHa~T~~Q~l~D~~h~d~Rr~Raa~~nIIPtsTgAakAi~~VlP~L~GKl~G~a~RVPt~~ 240 (336)
T PRK13535 161 PVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTIN 240 (336)
T ss_pred EHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCEECCCHHHHHHHHHCHHHCCCEEEEEEECCCCC
T ss_conf 12553663367577578877237687766667788863444024375456621788885216543786437899767897
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCHH
Q ss_conf 10112343320122067889999874100004857422587354434887862168326846428977999998387146
Q gi|254780654|r 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWG 317 (333)
Q Consensus 238 vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEwg 317 (333)
||++||+++++|++++||||++|++||+++|++||+|++||+||+||+|+++|||||+.+|++++++++|+++|||||||
T Consensus 241 vS~vDlt~~l~k~~t~eein~~~k~aa~~~lkgil~y~~~~lVS~Df~~~~~SsI~D~~~t~v~~~~~vKv~aWYDNEwG 320 (336)
T PRK13535 241 VTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWG 320 (336)
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCCCCEEEEHHHCEEECCCEEEEEEEECCHHH
T ss_conf 15899999963665489999999998536447844438796424204999950078730459978988999999886799
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 799999999997504
Q gi|254780654|r 318 FSNRMLDTASAMANL 332 (333)
Q Consensus 318 Ys~rlidl~~~ia~~ 332 (333)
|||||+|++.+||++
T Consensus 321 Ys~R~vdla~~ma~~ 335 (336)
T PRK13535 321 FANRMLDTTLAMAAV 335 (336)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999736
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=981.76 Aligned_cols=330 Identities=50% Similarity=0.816 Sum_probs=323.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
||||||||||||||++||+++++..++++||+|||++++++++|||||||+||+|+.+++.+++.|++||++|+++++++
T Consensus 1 MikIgINGFGRIGR~vlR~~~~~~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~~ 80 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEEEEEECCC
T ss_conf 90999968887899999999856699869999847998899999867147899989858971998999998878880599
Q ss_pred CCCCCCC--CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCC-EEEEEECCCCCCCCC-CEEECCCCCCHHHHH
Q ss_conf 3333446--563278606643332122001105842343303678873-489840553212222-103305764102346
Q gi|254780654|r 82 PQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVK-KTIVYGVNHQSLNKE-DKVVSNASCTTNCLV 157 (333)
Q Consensus 82 p~~i~W~--~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~-~tiV~GvN~~~~~~~-~~IiS~aSCTtn~la 157 (333)
|+++||+ ++|+||||||+|++++++++||++||||||||||+|++| +|+||||||++|+++ |+|||+|||||||||
T Consensus 81 p~~i~W~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~k~~d~~tiV~GVN~~~~~~~~h~IIS~aSCTTNclA 160 (337)
T PRK07403 81 PLNLPWAEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEGIGTYVVGVNHHEYDHEDYNIISNASCTTNCLA 160 (337)
T ss_pred HHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHCCCCCCEEEECCCHHHHHHH
T ss_conf 66698013099899989865487788999875698679980699888766699842635537544418973625876688
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 68887541210232210011345322235566545300011236564645311245677776201787104343123353
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~ 237 (333)
|++|+|||+|||++|+|||||+||++|+++|++|+|+||+|||++|||||+|||++|+++|||+|+|||+|+|+||||++
T Consensus 161 Pv~kvL~~~fgI~~g~mTTIHa~T~~Q~l~D~~~~D~Rr~Raa~~nIIPtsTgAakAi~~vlP~L~Gkl~g~a~RVPt~~ 240 (337)
T PRK07403 161 PIAKVIHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPN 240 (337)
T ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 89998875158759999887347788752567778645666365478866553788898764502897646888427777
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCHH
Q ss_conf 10112343320122067889999874100004857422587354434887862168326846428977999998387146
Q gi|254780654|r 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWG 317 (333)
Q Consensus 238 vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEwg 317 (333)
||++|||++++|++++||||++|++||+++|++||+|++||+||+||+|+++|||||+.+|++++++++|+++|||||||
T Consensus 241 vS~vDlt~~l~k~~t~eein~~~~~aa~~~l~gil~~~~~plVS~Df~g~~~S~i~D~~~t~v~~~~~vKv~~WYDNEwG 320 (337)
T PRK07403 241 VSVVDLVVQVEKPTITEQVNEVLKDAAEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEWG 320 (337)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHEECCCCEEECCCEEEEEEEECCHHH
T ss_conf 42799999738877499999999998657647865457886015210899812737440278978988999999897189
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 79999999999750
Q gi|254780654|r 318 FSNRMLDTASAMAN 331 (333)
Q Consensus 318 Ys~rlidl~~~ia~ 331 (333)
|||||+|++++|++
T Consensus 321 Ys~R~~dl~~~i~~ 334 (337)
T PRK07403 321 YSQRVVDLAELVAR 334 (337)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986
No 6
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=979.29 Aligned_cols=329 Identities=45% Similarity=0.706 Sum_probs=323.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688-99999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|+|||||||||||||++||+++++ ++|++|+|||+. ++++++|||||||+||+|+.+++.+++.|++||++|+++++
T Consensus 1 MtirIgINGFGRIGR~v~R~~~~~--~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~ 78 (333)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKRIRTTQN 78 (333)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEEEEEECC
T ss_conf 967999957887899999998528--990899991799998999998601267898998689809969999999877414
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCC-CEEEEEECCCCCCCCC-CEEECCCCCCHHHHH
Q ss_conf 23333344656327860664333212200110584234330367887-3489840553212222-103305764102346
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGV-KKTIVYGVNHQSLNKE-DKVVSNASCTTNCLV 157 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~-~~tiV~GvN~~~~~~~-~~IiS~aSCTtn~la 157 (333)
++|+++||+++|+||||||+|++++++++||++||||||+|||++++ ++|+||||||++|+++ |+|||+|||||||||
T Consensus 79 ~~p~~i~W~~vDiViEcTG~f~t~~~a~~Hl~~GakkViiSaP~k~~~~~tiV~GVN~~~~~~~~~~iiS~aSCTTNclA 158 (333)
T PRK08955 79 KAIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLYDPAIHPIVTAASCTTNCLA 158 (333)
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHCCCCCCCEEECCCHHHHHHH
T ss_conf 88012786667689991676688899999987598579965799877740489960322147654757874641421347
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 68887541210232210011345322235566545300011236564645311245677776201787104343123353
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~ 237 (333)
|++|+|||+|||++|+|||||+||++|+++|+||+|+||+|||++|||||+||||||+++|||+|+|||+|+|+||||++
T Consensus 159 P~~kvl~~~fgI~~g~mTTiHa~T~~Q~l~D~~h~d~Rr~Raa~~nIIPttTgAakai~~vlP~L~GKl~g~a~RVPt~~ 238 (333)
T PRK08955 159 PVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLAN 238 (333)
T ss_pred HHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCC
T ss_conf 69998886358416778755036688624777888633474220457877663889998644213896347999537877
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCHH
Q ss_conf 10112343320122067889999874100004857422587354434887862168326846428977999998387146
Q gi|254780654|r 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWG 317 (333)
Q Consensus 238 vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEwg 317 (333)
||++||+++++|++++||||++|++|++++|+++|+|++||+||+||+|+++|||||+++|++++++++|+++|||||||
T Consensus 239 vS~vDlt~~l~k~~t~eein~~~~~aa~~~lkgil~~~~~p~VS~D~~g~~~S~i~D~~~t~~~~~~~vKv~~WYDNEwG 318 (333)
T PRK08955 239 ASLTDCVFEVERDTTEEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWG 318 (333)
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHEEEHHHCEEECCCEEEEEEEECCHHH
T ss_conf 61799999975877799999999999738768879887896111200899932148830088967989999999996689
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 79999999999750
Q gi|254780654|r 318 FSNRMLDTASAMAN 331 (333)
Q Consensus 318 Ys~rlidl~~~ia~ 331 (333)
|||||+|++++++.
T Consensus 319 Ys~Rl~dl~~~vg~ 332 (333)
T PRK08955 319 YANRTAELARKVGL 332 (333)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999725
No 7
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=897.28 Aligned_cols=329 Identities=39% Similarity=0.619 Sum_probs=313.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--CCEEEEEEC----CCCCHHHHHHHHHHCCCCCCCCCEEEEEC--CCCCCCCCCCC
Q ss_conf 89885668688999999996888--872899960----68899999988751441255674089836--53001656542
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRR--DDVRIVAIN----DLNSIETMAHLLRYDSVHGRFPGEVKIIG--DTIDVGLGPIQ 75 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~--~~i~ivaIN----d~~~~~~~~~Ll~yDS~hG~~~~~v~~~~--~~l~in~~~i~ 75 (333)
-|.++|||||||++.|.+++... ..+.+.||- .-.|++..|.||+|||+||+|+++|++++ +.|++||++|+
T Consensus 131 DVVLYGFGRIGRLlAR~Lie~~g~g~~lrLrAIVvR~~~~~DL~KRAsLLr~DSvHG~F~Gti~vd~e~~~livNG~~I~ 210 (479)
T PRK08289 131 DVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGKEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQ 210 (479)
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCEEEE
T ss_conf 57997673799999999998628987468999998359657799999876013546674760899578897998995999
Q ss_pred CCCCCCCCCCCCC--CCC--EEEEECCCCCCCCCCCHHHHC-CCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCC
Q ss_conf 1101233333446--563--278606643332122001105-84234330367887348984055321222210330576
Q gi|254780654|r 76 VTSIRDPQDLPWG--DVD--VAMECTGFFVTQEKASLHLSN-GSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNAS 150 (333)
Q Consensus 76 i~~~~~p~~i~W~--~vD--iViEcTG~f~~~~~~~~HL~~-GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aS 150 (333)
++++++|+++||+ ++| +|+||||+|+++|++.+||++ ||||||+|||+|++++|+||||||+.|+++++||||||
T Consensus 211 v~~~~~P~~i~~~~~gi~~a~vie~TG~f~~~~~~~~Hl~~~Ga~kV~lsaP~k~~~~~iV~GVN~~~~~~~~~IiSnAS 290 (479)
T PRK08289 211 VIYANSPEEVDYTAYGINNALVVDNTGIWRDEEGLGQHLKSPGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAAS 290 (479)
T ss_pred EEECCCHHHCCHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCHHHCCCCCCEEECCC
T ss_conf 99789910195234098503899566731247787535348776869993578887534897456666698664675476
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 41023466888754121023221001134532223556654530001123656464531124567777620178710434
Q gi|254780654|r 151 CTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSS 230 (333)
Q Consensus 151 CTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a 230 (333)
||||||||++|+|||+|||++|+|||||||||||+++|+||+|+||+|||++|||||+||||+|++++||+|+|||+|+|
T Consensus 291 CTTNclAPv~KvL~d~fGI~~G~mtTVHsyTndQ~liD~~hk~~RRgRaAa~NiIPTsTGAAkAv~~vlPeL~GKL~G~A 370 (479)
T PRK08289 291 CTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNA 370 (479)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 26531789999875334747999886301028751668778876567733112124666357778865505588750689
Q ss_pred EECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCCEEEEECCC-EEEECCCCCCCCEEEECCCCEEECCCEEEE
Q ss_conf 3123353101123433201220678899998741-00004857422587-354434887862168326846428977999
Q gi|254780654|r 231 IRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFA-EGDLKNILGYVTLP-LVSVDFNHTSYSSIFAADQTKVVSQNLLRV 308 (333)
Q Consensus 231 ~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as-~~~~~~il~~~~~~-lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki 308 (333)
+||||||||++||+++++|++++||||++|+++| +++|+++|+|+++| +||+||+|+++|||||+.+|++. ++++|+
T Consensus 371 iRVPtpnVS~vDLt~~l~k~~t~eeiN~~lk~aa~~~~lkgil~yt~~pelVSsDfig~~~SsI~D~~~T~v~-g~~~~l 449 (479)
T PRK08289 371 IRVPTPNVSMAILNLNLEKETSREELNEYLRQMALHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIAN-GNRAVL 449 (479)
T ss_pred EECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCCCCCCCCCEEEECCCEEEE-CCCEEE
T ss_conf 9888887078999999779899999999999987449766637786589987223389985479983521997-896899
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9983871467999999999975049
Q gi|254780654|r 309 LVWYDNEWGFSNRMLDTASAMANLS 333 (333)
Q Consensus 309 ~~WYDNEwgYs~rlidl~~~ia~~~ 333 (333)
++||||||||||||+|++++||++.
T Consensus 450 ~~WYDNEwGYS~rvv~l~~~ma~v~ 474 (479)
T PRK08289 450 YVWYDNEFGYSCQVVRVMEQMAGVN 474 (479)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 9993671999999999999983888
No 8
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=856.58 Aligned_cols=330 Identities=57% Similarity=0.903 Sum_probs=321.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|+||||||||||||+++|++++++. ++|+|+|||+.+++++||||+|||+||+|+++++.+++.+.+|++.|+++.+++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCC
T ss_conf 9089994575788999999971789-759999936899789989986425578877732247874898995268873289
Q ss_pred CCCCCCCC--CCEEEEECCCCCCCCCCCHHHHC-CCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHH
Q ss_conf 33334465--63278606643332122001105-8423433036788734898405532122221033057641023466
Q gi|254780654|r 82 PQDLPWGD--VDVAMECTGFFVTQEKASLHLSN-GSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVP 158 (333)
Q Consensus 82 p~~i~W~~--vDiViEcTG~f~~~~~~~~HL~~-GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laP 158 (333)
|++|||++ +|+|+||||.|+++|++.+||++ |||||++|||.+++++|+|||+||+.|+++++|||+||||||||||
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap 159 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAP 159 (335)
T ss_pred HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHH
T ss_conf 68798121286399989987666334799987459978998578988861799852513357888489874511300678
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 88875412102322100113453222355665453000112365646453112456777762017871043431233531
Q gi|254780654|r 159 VVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNV 238 (333)
Q Consensus 159 vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~v 238 (333)
++|+|+++|||++|+|||||+||++|+++|+||+||||+|||++||||++||||+|+++|||+|+|||+|+|+||||+++
T Consensus 160 ~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~GKl~g~A~RVPt~~v 239 (335)
T COG0057 160 VAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNV 239 (335)
T ss_pred HHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf 79999886094599999997015987444476522010012347777578742331766470457845568999058872
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCHHH
Q ss_conf 01123433201220678899998741000048574225873544348878621683268464289779999983871467
Q gi|254780654|r 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGF 318 (333)
Q Consensus 239 S~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEwgY 318 (333)
|++||+++|+|++++||||++|++|+++.++++++|+|+|+||+||+|+++|+|||+.+|++.+++++|+++||||||||
T Consensus 240 s~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~gy 319 (335)
T COG0057 240 SVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGY 319 (335)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEECCCEEEEEEEEECCCCC
T ss_conf 79999999688788999999999864026542362464130266568994416897675687067489999999154322
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999997504
Q gi|254780654|r 319 SNRMLDTASAMANL 332 (333)
Q Consensus 319 s~rlidl~~~ia~~ 332 (333)
++|++|+..+++..
T Consensus 320 s~r~vD~~~~~~~~ 333 (335)
T COG0057 320 SNRVVDLLAMVAKA 333 (335)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 57789999998641
No 9
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422 This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding.
Probab=100.00 E-value=0 Score=790.65 Aligned_cols=321 Identities=47% Similarity=0.821 Sum_probs=313.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-----CCCCCC
Q ss_conf 89885668688999999996888-872899960688999999887514412556740898365300165-----654211
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGL-----GPIQVT 77 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~-----~~i~i~ 77 (333)
||+|||||||||+|+|++.|+++ .+|+||||||+++.+.++||+||||.||||+.+|+.+.+.|.|++ -.|++.
T Consensus 1 RVA~NGfGRIGR~VlRAlyE~g~~~~~~vVA~N~LA~~~~~~~L~~yD~~HGRF~~~v~~d~d~l~v~~~~geyD~i~vL 80 (334)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGKRLEIEVVALNELADQASMAHLLRYDTSHGRFAKEVKVDRDQLYVNDQNGEYDAIRVL 80 (334)
T ss_pred CEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHEEECCCEEEECCCCCCCCEEEEE
T ss_conf 93340476211000331103887341489985010246899999871677770501200046278883667772047874
Q ss_pred CCCCCCCCCCCC--CCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC---CCCEEEEEECCCCCCCCCCEEECCCCCC
Q ss_conf 012333334465--63278606643332122001105842343303678---8734898405532122221033057641
Q gi|254780654|r 78 SIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK---GVKKTIVYGVNHQSLNKEDKVVSNASCT 152 (333)
Q Consensus 78 ~~~~p~~i~W~~--vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k---d~~~tiV~GvN~~~~~~~~~IiS~aSCT 152 (333)
+++.++.|||.+ ||+|+||||.|.+++.+++||.+|||||++|.|.. |.|.|+|||||++++..+|+|+||||||
T Consensus 81 ~~~~~~~l~W~~L~VDlVL~C~G~Y~~r~~g~~~~~AGA~~VLFS~P~ase~DlDaTivYGVN~~~L~a~~~~VSNaSCT 160 (334)
T TIGR01532 81 HSSELEALPWRELGVDLVLDCTGVYGSREQGERHIRAGAKRVLFSHPGASEADLDATIVYGVNQEDLSAEHKIVSNASCT 160 (334)
T ss_pred CCCCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC
T ss_conf 15886657813506008994476656668899998738863441388874012664268502110235230367556541
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0234668887541210232210011345322235566545-300011236564645311245677776201787104343
Q gi|254780654|r 153 TNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS-DLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSI 231 (333)
Q Consensus 153 tn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~-d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~ 231 (333)
|||..|++|+|+|.|||+.|.+|||||-++||+++|++|. |+||.|||.|||||-.|+.++-|+++||+|++|+.+.|+
T Consensus 161 TNC~vP~~KlL~~A~G~e~~~iTTIHSaM~DQ~VIDAYH~eDLRRTRaA~QSiIPV~T~L~~GI~R~~P~~~~r~~A~av 240 (334)
T TIGR01532 161 TNCIVPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHEDLRRTRAASQSIIPVDTKLARGIERLFPEFADRFEAIAV 240 (334)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEECCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 11011064321012153301466664034688502234740134445441222004453121166640432474357898
Q ss_pred ECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEE
Q ss_conf 12335310112343320122067889999874100-00485742258735443488786216832684642897799999
Q gi|254780654|r 232 RVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEG-DLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLV 310 (333)
Q Consensus 232 RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~-~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~ 310 (333)
||||-||+.+||++.+++++++.|||..+++||++ .|+|++.|||-|+||+||+++|||+|+|++||.|.+.+++|+++
T Consensus 241 RVPTvNV~A~Dl~~~~~~~~~~~evN~~l~~Aa~~G~lrG~~~YTElP~~S~DFNHDPHSAIVDG~QTRVSg~~Lv~~L~ 320 (334)
T TIGR01532 241 RVPTVNVTALDLSVTVKRDVKANEVNRVLREAAQSGALRGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGARLVKLLV 320 (334)
T ss_pred ECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEHHHCCCCCEEEECCCCCCCEEECCCCCCCCCHHHEEEEE
T ss_conf 52710234555678850676388999999987526852000211148703550368995236758422004155300101
Q ss_pred EECCCHHHHHHHHH
Q ss_conf 83871467999999
Q gi|254780654|r 311 WYDNEWGFSNRMLD 324 (333)
Q Consensus 311 WYDNEwgYs~rlid 324 (333)
|+||||||||||+|
T Consensus 321 W~DNEWGFANRMLD 334 (334)
T TIGR01532 321 WCDNEWGFANRMLD 334 (334)
T ss_pred EECCCCCCHHHCCC
T ss_conf 22366242200369
No 10
>KOG0657 consensus
Probab=100.00 E-value=0 Score=621.12 Aligned_cols=280 Identities=43% Similarity=0.737 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--C
Q ss_conf 889999999968888728999606-8899999988751441255674089836530016565421101233333446--5
Q gi|254780654|r 13 IGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQDLPWG--D 89 (333)
Q Consensus 13 IGR~v~R~~~~~~~~~i~ivaINd-~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~~i~W~--~ 89 (333)
|||+++ + +.++++|+||| +.+.++++|+++|||+||+|+++++.++..++++|++|.++++++|.+|+|. +
T Consensus 1 ig~~~~-~-----~~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~~~~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657 1 IGRLVL-Q-----RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCCCCC-C-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCEEEEECCCCCCCCCCCCCC
T ss_conf 986443-3-----4664243446755346424544332456776466144237730024714775224674547610027
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 63278606643332122001105842343303678873489840553212222103305764102346688875412102
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGI 169 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laPvlk~l~~~~gI 169 (333)
+|+|+|+||.|++.|++..|+++|||||++|||++|+ |++|+|||+++|++...|||++|||||||||+.|++|++|||
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~da-pmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI 153 (285)
T KOG0657 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADA-PMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGI 153 (285)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCEEECHHHHHCCCCCHHHEEECCCCC
T ss_conf 5057505654212456652114662589960546778-721025555555654422303566541235143212003441
Q ss_pred HHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 3221001134532223556654-530001123656464531124567777620178710434312335310112343320
Q gi|254780654|r 170 EKGYMTTVHSYTGDQHVLDAGH-SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTS 248 (333)
Q Consensus 170 ~~g~~TTiH~~t~~Q~l~D~~~-~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~ 248 (333)
.+|.|||+|++|++|+.+|+|+ ++||++|.|.+||||.+|||+||++|++|+|+|||+||||||||| +|++||++.++
T Consensus 154 ~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~ 232 (285)
T KOG0657 154 MEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLE 232 (285)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC-EEEEEEECCCC
T ss_conf 13433420220255543568653300146311204345556177888777687617544641237854-67553100233
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 12206788999987410000485742258735443488786216832684642897799999838714679999999999
Q gi|254780654|r 249 RDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASA 328 (333)
Q Consensus 249 k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEwgYs~rlidl~~~ 328 (333)
|++++|+|++++|++++++||||| +|+ ++++|||||||||+|++|++.|
T Consensus 233 k~a~~ddikkvvk~~~~~~lkGIL--te~-----------------------------~fISWYDNE~GYS~rVvDl~~h 281 (285)
T KOG0657 233 KPAKYDDIKKVVKLASEIPLKGIL--TEH-----------------------------HFISWYDNEFGYSNRVVDLMEH 281 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCC--CCC-----------------------------CEEEEECCCCCCCHHHHHHHHH
T ss_conf 433257899999874036534410--000-----------------------------0002311445651477889999
Q ss_pred HHH
Q ss_conf 750
Q gi|254780654|r 329 MAN 331 (333)
Q Consensus 329 ia~ 331 (333)
|++
T Consensus 282 ~as 284 (285)
T KOG0657 282 MAS 284 (285)
T ss_pred HHC
T ss_conf 752
No 11
>pfam02800 Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.
Probab=100.00 E-value=0 Score=427.71 Aligned_cols=157 Identities=57% Similarity=0.871 Sum_probs=155.8
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 466888754121023221001134532223556654-5300011236564645311245677776201787104343123
Q gi|254780654|r 156 LVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGH-SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVP 234 (333)
Q Consensus 156 laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~-~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVP 234 (333)
|||++|+|||+|||++|+|||||+||++|+++|+|| +|+||+|||++||||++|||++|+++|||+|+|||+|+|+|||
T Consensus 1 LAP~~kvl~~~fgI~~g~mTTvHa~t~~Q~l~D~~~~~d~rr~Raa~~niIPt~TgAakav~~vlP~L~gkl~g~a~RVP 80 (158)
T pfam02800 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVDGPHHKDLRRGRAAAPNIIPTSTGAAKAVGLVLPELKGKLTGMAFRVP 80 (158)
T ss_pred CCCCHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 96008878764695488998760253874133455877400020122126644517889997643420576226898347
Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCCEEECCCEEEEEEEE
Q ss_conf 353101123433201220678899998741000048574225873544348878621683268464289779999983
Q gi|254780654|r 235 TPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWY 312 (333)
Q Consensus 235 t~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WY 312 (333)
|++||++||+++++|++++||||++|+++++++++|+|+|++||+||+||+|+++|||||.++|++++++++|+++||
T Consensus 81 t~~vS~vDlt~~l~k~~t~eeIn~~~~~as~~~~kgil~~~~~plVS~Df~~~~~S~I~D~~~t~v~~~~~vKi~~WY 158 (158)
T pfam02800 81 TPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGYTEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 158 (158)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCEEEHHHCCCCCCEEEECCCCEEECCCEEEEEEEC
T ss_conf 887406899999667888999999999997466789746865847623307998506998332689889889999979
No 12
>pfam00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=0 Score=390.56 Aligned_cols=147 Identities=56% Similarity=0.909 Sum_probs=142.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
|||||||||||||++||+++++ ++++||+|||++++++++|||||||+||+|+++++++++.|.+||++|+++++++|
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~--~~i~iv~INd~~~~~~~a~LlkyDS~hG~~~~~v~~~~~~i~i~g~~I~~~~~~~p 78 (150)
T pfam00044 1 IKVGINGFGRIGRLVLRAALAQ--DDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVDEDGLIVNGKKIKVFAERDP 78 (150)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCEEEEEEECCCC
T ss_conf 9898977868999999999768--99679998547999999999841354688698642639808999957899954895
Q ss_pred CCCCCC--CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCC-CEEEEEECCCCCCCCCCEEECCCCC
Q ss_conf 333446--56327860664333212200110584234330367887-3489840553212222103305764
Q gi|254780654|r 83 QDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGV-KKTIVYGVNHQSLNKEDKVVSNASC 151 (333)
Q Consensus 83 ~~i~W~--~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~-~~tiV~GvN~~~~~~~~~IiS~aSC 151 (333)
+++||+ ++|+||||||+|++++++++||++||||||+|||++|+ ++|+||||||++|+++++|||+|||
T Consensus 79 ~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GaKkViiSaP~~d~~~~tiV~GVN~~~~~~~~~iiS~ASC 150 (150)
T pfam00044 79 AELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISAPAKDDADPTFVYGVNHDDYDPEDDIVSNASC 150 (150)
T ss_pred CCCCCCCCCCCEEEEECCEEEEHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHCCCCCCEEECCCC
T ss_conf 528624354788998043240288777787579877999579988867789977676567998898968889
No 13
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=0 Score=382.21 Aligned_cols=147 Identities=59% Similarity=0.961 Sum_probs=143.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
|||||||||||||+++|+++++ ++++||+|||++++++++|||+|||+||+|+.+++.+++.|.+||++|+++++++|
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~--~~~~vv~INd~~~~~~~a~Ll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEECCEEEEEECCCCC
T ss_conf 9898977878999999999768--99589984577768999999853243688688632608808999957642305896
Q ss_pred CCCCCC--CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCC
Q ss_conf 333446--563278606643332122001105842343303678873489840553212222103305764
Q gi|254780654|r 83 QDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASC 151 (333)
Q Consensus 83 ~~i~W~--~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSC 151 (333)
+++||+ ++|+||||||+|++++++++||++||||||+|||++|+++|+||||||++|+++++|||+|||
T Consensus 79 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~tiV~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred CCCCHHHCCCCEEEECCCEEEEHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCHHHCCCCCCEEECCCC
T ss_conf 54872340888899805513128876666647967699827988998789974575447998898968879
No 14
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.2e-34 Score=242.05 Aligned_cols=237 Identities=22% Similarity=0.293 Sum_probs=186.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-C-HHHHHHHHHHCCCCCCCCCEEE-EECCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688-9-9999988751441255674089-8365300165654211
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-S-IETMAHLLRYDSVHGRFPGEVK-IIGDTIDVGLGPIQVT 77 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~-~~~~~~Ll~yDS~hG~~~~~v~-~~~~~l~in~~~i~i~ 77 (333)
||+||||||||+|||.|.++...+ +|+++|.|++.. | ...++....|+ +|...+..++ +++..+.+.|.
T Consensus 1 m~ikV~INGyGtIGkRVAdav~~q--~DmelVGV~k~~pd~~a~~a~~kG~~-vy~~~~~~~~~F~~aGi~v~Gt----- 72 (338)
T PRK04207 1 MMIKVAVNGYGTIGKRVADAVAAQ--DDMEVVGVSKTKPDYEARVAVERGYP-LYVADPERLDAFEKAGIEVAGT----- 72 (338)
T ss_pred CCEEEEEECCCCHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHCCCC-EEECCHHHHHHHHHCCCCCCCC-----
T ss_conf 948999824860558998887359--98189978679997789999986996-7853776665687569866676-----
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCC-CEEEEEECCCCCCCCCCEEECCCCCCHHHH
Q ss_conf 0123333344656327860664333212200110584234330367887-348984055321222210330576410234
Q gi|254780654|r 78 SIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGV-KKTIVYGVNHQSLNKEDKVVSNASCTTNCL 156 (333)
Q Consensus 78 ~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~-~~tiV~GvN~~~~~~~~~IiS~aSCTtn~l 156 (333)
.+++ ..++|+|+|||+.+...+..+.|.+.|.|.++-.++.++. +..|+.++|++++-.. ..++.+||+|+||
T Consensus 73 ----iedl-l~~aDvVvDcTP~g~G~~Nk~~Y~~~g~kaIfQGGEk~~va~~sFna~~Ny~~a~Gk-~~vrvvSCNTTgL 146 (338)
T PRK04207 73 ----IEDL-LEKADIVVDATPGGVGAKNKPLYEKAGVKAIFQGGEKAEVAEVSFNALANYEEAIGK-DYVRVVSCNTTGL 146 (338)
T ss_pred ----HHHH-HHCCCEEEECCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHCCC-CCEEEEEECCCCH
T ss_conf ----8897-521899998999764400227688759837996588767677506730145776387-6379965320345
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCCHH--HHHHHHHHHHCCCCCEEEEE
Q ss_conf 668887541210232210011345322235566545300011-23656464--53112--45677776201787104343
Q gi|254780654|r 157 VPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSR-AAAISMVP--TSTGA--AKAVELVLPNLKGKLDGSSI 231 (333)
Q Consensus 157 aPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~R-aa~~niIP--t~Tga--a~ai~~vlP~l~gkl~g~a~ 231 (333)
+++++.|++.|||+++.+|+|.-. .|.++.+ ...++|.| .+..+ +.-+..|+|+| ++.++|+
T Consensus 147 ~R~l~~L~~~~gi~k~r~tlvRRa-----------aDp~~~~kGpInai~p~p~~iPSHHgpDv~tV~p~l--~i~t~Av 213 (338)
T PRK04207 147 CRTLYPLREAFGVKKVRATLVRRA-----------ADPNEVKKGPINAIVPDPVTIPSHHGPDVKTVLPDL--DIVTMAV 213 (338)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEC-----------CCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC--CEEEEEE
T ss_conf 788999987518226999999833-----------894450358744315799778887660088756798--7168999
Q ss_pred ECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 123353101123433201220678899998741
Q gi|254780654|r 232 RVPTPNVSMVDLKCVTSRDVNIDEINATMKYFA 264 (333)
Q Consensus 232 RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as 264 (333)
.|||+-..+-.+.++|++++++|+|.++|++..
T Consensus 214 kVPttlmH~H~~~v~l~~~~t~~eVl~~~~~~~ 246 (338)
T PRK04207 214 KVPTTLMHMHSINVELKKPVTKDDVLEALENTP 246 (338)
T ss_pred ECCCCEEEEEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 748630589999999799888899999996389
No 15
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.75 E-value=1.1e-17 Score=136.21 Aligned_cols=294 Identities=19% Similarity=0.174 Sum_probs=197.7
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
++|||-| -|-.||.+++.+-+++-+-.++...... .| .+..+..+++.+.+ .+
T Consensus 5 ~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~------------~S-----------aGk~i~~~~~~~~v---~~ 58 (337)
T PRK08040 5 WNIALLGATGAVGEALLETLAERQFPVGEIYALARE------------ES-----------AGETLRFGGKSITV---QD 58 (337)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC------------CC-----------CCCEEEECCCEEEE---EE
T ss_conf 879998885088999999997179981359999888------------88-----------99777789918899---97
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECC--CCCCCEEEEEECCCCCCCC--CCEEECCCCCCHHHH
Q ss_conf 33334465632786066433321220011058423433-036--7887348984055321222--210330576410234
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAP--CKGVKKTIVYGVNHQSLNK--EDKVVSNASCTTNCL 156 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP--~kd~~~tiV~GvN~~~~~~--~~~IiS~aSCTtn~l 156 (333)
+++.+|.++|+++-|.|.-.+++-+....++|+ .||= |.. .+.+.|.+|++||.+.+.. +.+||++..|+|-.+
T Consensus 59 ~~~~~~~~~di~ff~a~~~~s~~~~~~a~~aG~-~VIDnss~~Rm~~dVPLvvPeVN~~~l~~~~~~~IianPNCsT~~l 137 (337)
T PRK08040 59 AAEFDWTQAQLAFFVAGKEASAAYAEEATNAGC-LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNVIAVADSLTSQL 137 (337)
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCC-EEEECCHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 770332469889991771788888999984895-9997961310588874216740878887432498254577088888
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCC------------CCCCCCC-CCCC-CCCCCCCCCCCCCCC---HH-------H
Q ss_conf 668887541210232210011345322------------2355665-4530-001123656464531---12-------4
Q gi|254780654|r 157 VPVVHVLDKMFGIEKGYMTTVHSYTGD------------QHVLDAG-HSDL-YRSRAAAISMVPTST---GA-------A 212 (333)
Q Consensus 157 aPvlk~l~~~~gI~~g~~TTiH~~t~~------------Q~l~D~~-~~d~-Rr~Raa~~niIPt~T---ga-------a 212 (333)
+..||.|++.|||++-.+||.+|.... ..++.+. ..+. --.+--+.|+||.-- |- .
T Consensus 138 ~~aL~pL~~~~gi~rv~vsTyQAvSGaG~~gv~eL~~qt~~ll~g~~~~~~~~f~~qiafNviP~I~~e~g~t~EE~K~~ 217 (337)
T PRK08040 138 LAALKPLIDQGGLSRISVTNLISASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIV 217 (337)
T ss_pred HHHHHHHHHHCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98778888630645899998640410358899999999999854998876545775332565674478787429899998
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCC--EEE-ECCCCCCC
Q ss_conf 567777620178710434312335310112343320122067889999874100004857422587--354-43488786
Q gi|254780654|r 213 KAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLP--LVS-VDFNHTSY 289 (333)
Q Consensus 213 ~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~--lVS-~D~ig~~~ 289 (333)
.-..|+|+.-.=++++.++||||..+-..-++++++++.+.|++.++|.++. ++ -+.+++ .-. .|--|...
T Consensus 218 ~EtrKIL~~~~i~VsaTcvRVPV~~GHs~sV~ve~~~~~~~e~~~~~l~~~~-----~v-~~~de~~~P~p~~da~g~~~ 291 (337)
T PRK08040 218 DEVRKILQDEGLMISASVVQSPVFYGHAQMVHFEALRPLAAEEARDAFAQGE-----DI-VLSEENDYPTQVGDASGNPH 291 (337)
T ss_pred HHHHCCCCCCCCCCCEEEEECCEECCEEEEEEEEECCCCCHHHHHHHHHCCC-----CC-EEECCCCCCCCCHHCCCCCC
T ss_conf 8750646788876410799744031178899999878799999999986089-----97-98279999874000379987
Q ss_pred CEEEECCCCE-EECCCEEEEEEEECCCH-HHHHHHHHHHHHHHH
Q ss_conf 2168326846-42897799999838714-679999999999750
Q gi|254780654|r 290 SSIFAADQTK-VVSQNLLRVLVWYDNEW-GFSNRMLDTASAMAN 331 (333)
Q Consensus 290 s~i~D~~~t~-v~~~~~~Ki~~WYDNEw-gYs~rlidl~~~ia~ 331 (333)
-.| ++--. ....+.+++.+==||=. |=|-.-+.+++++.+
T Consensus 292 v~V--GRiR~d~~~~~~l~~w~v~DNlrkGAA~naVqiaE~Lv~ 333 (337)
T PRK08040 292 LSI--GCVRNDYGMPEQLQFWSVADNVRFGGALMAVKIAEKLVQ 333 (337)
T ss_pred EEE--EEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 698--824766888892899999726888699999999999998
No 16
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.75 E-value=1.8e-16 Score=128.28 Aligned_cols=299 Identities=18% Similarity=0.210 Sum_probs=195.8
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 961898856-6868899999999688887289996068899999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
||+||||-| -|-.|+-++|++-+++.+.++++++.... | -|+ .+.+.++.+.+
T Consensus 1 mm~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~------------s-~G~----------~~~~~~~~~~~--- 54 (348)
T PRK06598 1 MMYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSR------------S-GGK----------APSFGGKTLLV--- 54 (348)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC------------C-CCC----------CCEECCCEEEE---
T ss_conf 984799989845999999999986799962499998756------------6-898----------75068955478---
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCC--CCCCEEEEEECCCCCCCCC--CEEECCCCCCHH
Q ss_conf 233333446563278606643332122001105842343-30367--8873489840553212222--103305764102
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPC--KGVKKTIVYGVNHQSLNKE--DKVVSNASCTTN 154 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~--kd~~~tiV~GvN~~~~~~~--~~IiS~aSCTtn 154 (333)
.+.+.-+|.++|+++-|.|.-.+++-+....++|++ || .|+.. +++.+.++..+|.+.+... .+|||+..|+|.
T Consensus 55 ~~~~~~~~~~~Di~f~a~~~~~s~~~~~~~~~~g~~-VIDlSs~fR~~~~vplvvPEiN~~~i~~~~~~~iIAnPgC~~t 133 (348)
T PRK06598 55 DALDIEDLKGLDIALFSAGGDYSKEVAPKLRAAGGV-VIDNASALRMDPDVPLVVPEVNPDAIKDALKKGIIANPNCTTS 133 (348)
T ss_pred EECCHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCE-EEECCHHHCCCCCCEEECCCCCHHHHHHCCCCCCEECCCCHHH
T ss_conf 627855760799999868823568888999758989-9988643103688437646207899973413682238881999
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC------------CCCCCC-----------CCC---CCCCCCCCCCCCCC
Q ss_conf 3466888754121023221001134532223------------556654-----------530---00112365646453
Q gi|254780654|r 155 CLVPVVHVLDKMFGIEKGYMTTVHSYTGDQH------------VLDAGH-----------SDL---YRSRAAAISMVPTS 208 (333)
Q Consensus 155 ~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~------------l~D~~~-----------~d~---Rr~Raa~~niIPt~ 208 (333)
++++.++.|+++++|++-.++|..+....=+ +..+.. ... .-.+.-+.|+||.-
T Consensus 134 ~~~laL~PL~k~~~I~~i~vstyqavSGAG~~~v~eL~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~i 213 (348)
T PRK06598 134 LMLMALGPLHDAALIERVVVSTYQAVSGAGAAGMRELLTQMGALLAHVADELADPASAISDELPPDKFGVPIAFNLIPWI 213 (348)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCC
T ss_conf 99999998998559513258788520015686899999999987504431124530110256674436775031015656
Q ss_pred C-----HHH----HH---HHHHH--HHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 1-----124----56---77776--2017871043431233531011234332012206788999987410000485742
Q gi|254780654|r 209 T-----GAA----KA---VELVL--PNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGY 274 (333)
Q Consensus 209 T-----gaa----~a---i~~vl--P~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~ 274 (333)
- |-. |. ..|+| |+| ++++..+|||+..|-..-+.++++++.+.+++.+++.++.+-.+.+...-
T Consensus 214 ~~~~~~g~t~EE~K~~~Et~kIL~~~~l--~Vs~T~vRVPv~~Gh~~ti~v~~~~~i~~~~i~~~l~~~~~v~~~~~~~~ 291 (348)
T PRK06598 214 DKFLDNGQTKEEWKMVAETNKILGDPDI--PVDGTCVRVPVFRGHSEAVTIELKKDVSVEEAEEILNEAPGVVPNDKEAT 291 (348)
T ss_pred CCCCCCCCCHHHHHHHHHHHHEECCCCC--CEEEEEEECCEECCEEEEEEEEEECCCCHHHHHHHHHCCCCCEEECCCCC
T ss_conf 8645588688999888876412168998--35679998331221788999998126888999999970899589227644
Q ss_pred ECCCEEEECCCCCCCCEEEECCCC-EEECCCEEEEEEEECCC-HHHHHHHHHHHHHHHH
Q ss_conf 258735443488786216832684-64289779999983871-4679999999999750
Q gi|254780654|r 275 VTLPLVSVDFNHTSYSSIFAADQT-KVVSQNLLRVLVWYDNE-WGFSNRMLDTASAMAN 331 (333)
Q Consensus 275 ~~~~lVS~D~ig~~~s~i~D~~~t-~v~~~~~~Ki~~WYDNE-wgYs~rlidl~~~ia~ 331 (333)
...| --.|..|...-.| ++.- ....++.+.+.+=-||= +|=|-+.+..+..|-+
T Consensus 292 ~~~p-~p~~v~g~~~v~V--GRiR~d~~~~~~l~l~~v~DNL~KGAA~~AVQ~~eil~~ 347 (348)
T PRK06598 292 MRYL-TPAAVTGTLAVPV--GRIRKDNMGPNGLSLFTVGDQLLKGAAENLVQIAEILLE 347 (348)
T ss_pred CCCC-CHHHHCCCCCEEE--EEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHC
T ss_conf 6899-7077479876799--977874889998999998234478589999999999864
No 17
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.74 E-value=3.6e-16 Score=126.30 Aligned_cols=294 Identities=17% Similarity=0.206 Sum_probs=201.2
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|||||-| -|-.|+-++|.+-+++.+-.++..+-... | .+..+-..++.+.+ .+
T Consensus 5 ~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~------------s-----------aGk~i~~~~~~l~v---~~ 58 (336)
T PRK05671 5 LDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASME------------S-----------AGHSVPFAGKNLRV---RE 58 (336)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC------------C-----------CCCEEEECCCEEEE---EE
T ss_conf 8799999864999999999863699802699998765------------6-----------89875468967899---97
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCC-CCCCEEEEEECCCCCCCC--CCEEECCCCCCHHHHH
Q ss_conf 3333446563278606643332122001105842343-30367-887348984055321222--2103305764102346
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPC-KGVKKTIVYGVNHQSLNK--EDKVVSNASCTTNCLV 157 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~-kd~~~tiV~GvN~~~~~~--~~~IiS~aSCTtn~la 157 (333)
+++.+|.++|+|+-++|.-.+++-+...+++|++ || .|+.. .+..|.+|+.+|.+.+.. +..||+|..|+|..++
T Consensus 59 ~~~~~~~~vDlvffa~~~~vs~~~a~~~~~aG~~-VID~Ss~fr~~~vPlvvPEvN~~~l~~~~~~~iVanPnC~t~~l~ 137 (336)
T PRK05671 59 VDSFDFSQVKLAFFAAGAAVSRSFAEKALAAGCS-VIDLSGALPSAQAPNVVPEANAERLASLAAPFLVSSPSASAVALA 137 (336)
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCE-EEECCCCCCCCCCCEEECCCCHHHHHHCCCCCEEECCCCHHHHHH
T ss_conf 8824424598899868816679989999976997-995620133037977740429999960756877867860666666
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCC------------CCCCCC-CCCCCCCCCCCCCCCCCCHH------------H
Q ss_conf 6888754121023221001134532223------------556654-53000112365646453112------------4
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTGDQH------------VLDAGH-SDLYRSRAAAISMVPTSTGA------------A 212 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~------------l~D~~~-~d~Rr~Raa~~niIPt~Tga------------a 212 (333)
+.++.|++.||+++-.++|..+....=. ++++.. ..---.+--+.|+||.--+. .
T Consensus 138 laL~Pl~~~~~l~~i~v~t~qavSGaG~~gv~~L~~qt~~lln~~~~~~~~~~~~iafNviP~ig~~~~~g~~~eE~k~~ 217 (336)
T PRK05671 138 VALAPLKGLLDIQRVQVTACLAVSALGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDEQGHTALERRLV 217 (336)
T ss_pred HCCHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 30166898709438999864050107765689999999987268877765554010043343457556678769998777
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC---CEEEECCCCCCC
Q ss_conf 56777762017871043431233531011234332012206788999987410000485742258---735443488786
Q gi|254780654|r 213 KAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTL---PLVSVDFNHTSY 289 (333)
Q Consensus 213 ~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~---~lVS~D~ig~~~ 289 (333)
.-..++|..-+.+++...+|||+..|-..-+.++++++++.+++.++++++ .++ .+-++ |--=.|-.|...
T Consensus 218 ~e~~kil~~~~~~vs~t~vrVPV~~Ghs~sv~v~~~~~~~~~~i~~~l~~~-----~~v-~~~~~~~~P~p~~d~~g~~~ 291 (336)
T PRK05671 218 AELRQLLGLPELKVSVTCIQVPVFFGDSFSVTLQSAEPVDLAAVNAALEAA-----DGI-ELVEAGDYPTPVGDAVGQDV 291 (336)
T ss_pred HHHHHHHCCCCCCCEEEEEECCEECCEEEEEEEEECCCCCHHHHHHHHHCC-----CCC-EEECCCCCCCCCCCCCCCCC
T ss_conf 888776348887734688972303118999999957988699999998559-----997-99488999885210279987
Q ss_pred CEEEECCCCE-EECCCEEEEEEEECCC-HHHHHHHHHHHHHHHH
Q ss_conf 2168326846-4289779999983871-4679999999999750
Q gi|254780654|r 290 SSIFAADQTK-VVSQNLLRVLVWYDNE-WGFSNRMLDTASAMAN 331 (333)
Q Consensus 290 s~i~D~~~t~-v~~~~~~Ki~~WYDNE-wgYs~rlidl~~~ia~ 331 (333)
..| ++.-. ..+.+.+++.+=-||= +|=|-+-|-++.+|-+
T Consensus 292 v~V--GRiR~~~~~~~~l~~~~v~DNl~kGAA~~AVq~AE~l~k 333 (336)
T PRK05671 292 VYV--GRVRAGVDDPRQLNLWLTSDNVRKGAALNAVQVGELLIK 333 (336)
T ss_pred EEE--EEEECCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 689--861525898997999999821788699999999999998
No 18
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.73 E-value=1.7e-16 Score=128.48 Aligned_cols=295 Identities=17% Similarity=0.237 Sum_probs=192.4
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
++|||-| -|-.|+-++|.+-+. ++|++..+.=+++ ...-|+ ++ ...++.+.+ .+
T Consensus 6 ~nVaIvGATG~VG~~li~lL~~h--~~f~v~~v~~~aS----------~~saGk---~v-------~~~~~~~~v---~~ 60 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE--TKFNIAEVTLLSS----------KRSAGK---TV-------QFKGREIII---QE 60 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCCCCCEEEEEC----------CCCCCC---CE-------EECCCEEEE---EE
T ss_conf 77999988039999999999727--8987510799865----------877997---62-------689927899---85
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECC--CCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHH
Q ss_conf 33334465632786066433321220011058423433-036--788734898405532122221033057641023466
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAP--CKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVP 158 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP--~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laP 158 (333)
++.-+|.++|+|+-|+|.-.+++-+...+++|++ ||= |+. .+.+.|.+|+.||.+.+....+||++..|+|.+++.
T Consensus 61 ~~~~~~~~~Divf~a~~~~~s~~~~~~~~~~G~~-VID~Ssa~R~~~~vPlvvPEvN~~~l~~~~~iIanPnC~tt~l~l 139 (347)
T PRK06728 61 AKINSFEGVDIAFFSAGGEVSRQFVNQAVSSGAI-VIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVT 139 (347)
T ss_pred CCHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCE-EEECCHHHCCCCCCCEECCCCCHHHHHCCCCEEECCCHHHHHHHH
T ss_conf 7844651697899768578899999999858969-998975656899974588752966762327837789808889999
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCC------------CCCCC--------CCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 88875412102322100113453222------------35566--------54530001123656464531---------
Q gi|254780654|r 159 VVHVLDKMFGIEKGYMTTVHSYTGDQ------------HVLDA--------GHSDLYRSRAAAISMVPTST--------- 209 (333)
Q Consensus 159 vlk~l~~~~gI~~g~~TTiH~~t~~Q------------~l~D~--------~~~d~Rr~Raa~~niIPt~T--------- 209 (333)
.|+.|++.|+|++-.++|..+....= .++.+ |.+.-++...-+.|+||.--
T Consensus 140 aL~PL~~~~~i~~v~vst~QavSGaG~~gv~eL~~q~~~~l~g~~~~~~~~p~~~~~~~~piafNviP~i~~~~~~g~t~ 219 (347)
T PRK06728 140 ALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTF 219 (347)
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCH
T ss_conf 99999985376612356653002256778999999999874688665444565555446730332056557556689589
Q ss_pred ---HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCE-----EE
Q ss_conf ---1245677776201787104343123353101123433201220678899998741000048574225873-----54
Q gi|254780654|r 210 ---GAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPL-----VS 281 (333)
Q Consensus 210 ---gaa~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~l-----VS 281 (333)
....-..++|..-.=+++...+|||+..|-..-+.++++++.+.+++.+++.++. ++. +.++|- ..
T Consensus 220 EE~k~~~E~~kIL~~~~l~is~tcvRVPv~~GH~~sv~v~~~~~~~~eei~~~l~~~~-----~v~-~~d~p~~~~~p~p 293 (347)
T PRK06728 220 EEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP-----GVI-LQDNPSEQLYPMP 293 (347)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHCC-----CCE-ECCCCCCCCCCCC
T ss_conf 9988877777516788775056999957505282368999857799999999997489-----988-5148654689887
Q ss_pred ECCCCCCCCEEEECCCCE-EECCCEEEEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 434887862168326846-428977999998387-14679999999999750
Q gi|254780654|r 282 VDFNHTSYSSIFAADQTK-VVSQNLLRVLVWYDN-EWGFSNRMLDTASAMAN 331 (333)
Q Consensus 282 ~D~ig~~~s~i~D~~~t~-v~~~~~~Ki~~WYDN-EwgYs~rlidl~~~ia~ 331 (333)
.+..|.....| ++.-. ....+-+.+.+==|| -||=|-+-|-++.+|.+
T Consensus 294 ~~~~g~~~v~V--GRiR~d~~~~~~l~~~~v~DNl~kGAA~~AVq~aE~l~~ 343 (347)
T PRK06728 294 LYAEGKIDTFV--GRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVE 343 (347)
T ss_pred CCCCCCCCEEE--EEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 21169986477--641655899996999999735689899999999999997
No 19
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.70 E-value=1.7e-15 Score=121.94 Aligned_cols=292 Identities=15% Similarity=0.132 Sum_probs=196.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
++|+|-.-|-.||.+++.+-+++ |.+- . .+|| .|- . ...+..+..+|+.+ ...++
T Consensus 5 ~niAIGATGaVG~~~l~iLeer~---fPv~---~-------L~ll--as~--~-----~s~~~~i~f~g~~v---~~~~~ 59 (323)
T PRK06901 5 LNIAIAAEFELSEKIVEALEESD---LEIS---S-------ISIV--EIE--P-----FGEEQGIRFNNKAV---EQIAP 59 (323)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCCC---E-------EEEE--EEC--C-----CCCCCEEEECCEEE---EEECH
T ss_conf 41899766689999999999759---9946---0-------8777--632--6-----67885799899899---99512
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-E-CC-CCCCCEEEEEECCCCCCCC--CCEEECCCCCCHHHHH
Q ss_conf 3334465632786066433321220011058423433-0-36-7887348984055321222--2103305764102346
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV-S-AP-CKGVKKTIVYGVNHQSLNK--EDKVVSNASCTTNCLV 157 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-S-aP-~kd~~~tiV~GvN~~~~~~--~~~IiS~aSCTtn~la 157 (333)
++-+|.++|+++- .|.-.+++.+..-.++||. ||= | |- .+.+.|.+|+.||.+.+.. .+.||+|..|+|--++
T Consensus 60 ~~f~~~~vdi~ff-Ag~~~s~~~~p~A~~aG~v-VIDnSSafRmd~dvPLVVPEVN~~~l~~~~~~~IIANPNCsTiqlv 137 (323)
T PRK06901 60 DEVEWADFNYVFF-AGKLEQVEHLAQAAEAGCI-VIDMLGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLA 137 (323)
T ss_pred HHCCCCCCCEEEE-CCCHHHHHHHHHHHHCCCE-EEECCHHHHCCCCCCEECCCCCHHHHHCCHHCCEEECCCHHHHHHH
T ss_conf 1356324889998-5828999999999988989-9989756517899864806749999851311798889982899999
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCC
Q ss_conf 6888754121023221001134532------------22355665453000112365646453112-4567777620178
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYTG------------DQHVLDAGHSDLYRSRAAAISMVPTSTGA-AKAVELVLPNLKG 224 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t~------------~Q~l~D~~~~d~Rr~Raa~~niIPt~Tga-a~ai~~vlP~l~g 224 (333)
..||.||+.|||++-.+||..|... ++.++.+..-+.. .+.-+.|.||..-.- ..-..|+||++.
T Consensus 138 vaL~PLh~~~~ikrvvvsTYQaVSGaG~~gv~EL~~Qt~~~lng~~~~~~-~~qiAFN~iP~ee~k~~~Et~KIl~~~~- 215 (323)
T PRK06901 138 LALAPFLQEQPLNQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEE-EQRLAFDVFPAQAQNLELQLQKIFPQLE- 215 (323)
T ss_pred HHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCEEECCCCCCCCCCHHHHHHHCCCCC-
T ss_conf 98899999719778999862004554188999999999997369999878-8743355658301034188887217876-
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEE----EECCCCCCCCEEEECCCCEE
Q ss_conf 71043431233531011234332012206788999987410000485742258735----44348878621683268464
Q gi|254780654|r 225 KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLV----SVDFNHTSYSSIFAADQTKV 300 (333)
Q Consensus 225 kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lV----S~D~ig~~~s~i~D~~~t~v 300 (333)
+++..++||||..+-..-++++++++.+.+++.+++.++- + +.+.+++.. -.+.-+......+..+.-..
T Consensus 216 ~vsaT~VRVPV~~gHSesV~ve~~~~~~~~~~~~~l~~~~-----g-v~~~~~~~~~p~~~~~~~~~~~~~~~rir~d~~ 289 (323)
T PRK06901 216 NATFHSIQVPVFYGLAQMVTALSDYDLDIESILAEWQQNN-----L-LRYHEEKLITPVLNGENENGEESVKLHISQLSA 289 (323)
T ss_pred CCEEEEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCC-----C-EEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 6301018820342388999999789899999999860699-----8-587468888884650016885559998347899
Q ss_pred ECCCEEEEEEEECCCH-HHHHHHHHHHHHHH
Q ss_conf 2897799999838714-67999999999975
Q gi|254780654|r 301 VSQNLLRVLVWYDNEW-GFSNRMLDTASAMA 330 (333)
Q Consensus 301 ~~~~~~Ki~~WYDNEw-gYs~rlidl~~~ia 330 (333)
.++-+.+-+==||=. |=|-.-+.+++++-
T Consensus 290 -~~ngl~lWvvaDNlRKGAAlNAVQIAE~Li 319 (323)
T PRK06901 290 -VENGVQFWSVADEQRFNLAFLAVKLLELIY 319 (323)
T ss_pred -CCCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf -899799999770177889999999999999
No 20
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.69 E-value=1.3e-15 Score=122.60 Aligned_cols=296 Identities=20% Similarity=0.206 Sum_probs=206.6
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECC-CCCCCCCCCCCCCC
Q ss_conf 61898856-68688999999996888872899960688999999887514412556740898365-30016565421101
Q gi|254780654|r 2 VCKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGD-TIDVGLGPIQVTSI 79 (333)
Q Consensus 2 ~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~-~l~in~~~i~i~~~ 79 (333)
++||||-| -|-.|+-++..+-++ ++.++.+.+-- .-+..+. ++...++.+.+. +
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~-~f~~~~~~~~A----------------------S~rSaG~~~~~f~~~~~~v~-~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEER-HFPFEELVLLA----------------------SARSAGKKYIEFGGKSIGVP-E 56 (334)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHC-CCCCCEEEEEE----------------------CCCCCCCCCCCCCCCCCCCC-C
T ss_conf 918999942355899999998753-99840578885----------------------23115771601067503576-2
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC----CCCCEEEEEECCCCCCCCC--CE-EECCCCCC
Q ss_conf 23333344656327860664333212200110584234330367----8873489840553212222--10-33057641
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC----KGVKKTIVYGVNHQSLNKE--DK-VVSNASCT 152 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~----kd~~~tiV~GvN~~~~~~~--~~-IiS~aSCT 152 (333)
.-.+...|+++|||+-|-|.-.+++-....-++| .++|+..+ +++.|.+|..||.+.+... .. ||+++-||
T Consensus 57 ~~~~~~~~~~~Divf~~ag~~~s~~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCs 134 (334)
T COG0136 57 DAADEFVFSDVDIVFFAAGGSVSKEVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCS 134 (334)
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCEEECCCHH
T ss_conf 1134100124999999176687899999999769--88996873111589987765886989997454179789889718
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC-----CCC-------CCCCCCCCCCCCCCCCCCCCCH----------
Q ss_conf 023466888754121023221001134532223-----556-------6545300011236564645311----------
Q gi|254780654|r 153 TNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQH-----VLD-------AGHSDLYRSRAAAISMVPTSTG---------- 210 (333)
Q Consensus 153 tn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~-----l~D-------~~~~d~Rr~Raa~~niIPt~Tg---------- 210 (333)
|-.+++.||.|+++|||++-.++|..|....-. +++ +..-+.. ++--+.|+||.-.+
T Consensus 135 t~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~-~~~iAfNviP~I~~~~~ng~t~EE 213 (334)
T COG0136 135 TIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPI-GYPLAFNVIPHIDGFLDNGYTKEE 213 (334)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEHHHHCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 9999998898875138108999975011226810156689887431367655665-664333101357764557751899
Q ss_pred --HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEC-CCEEEECCCCC
Q ss_conf --245677776201787104343123353101123433201220678899998741000048574225-87354434887
Q gi|254780654|r 211 --AAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVT-LPLVSVDFNHT 287 (333)
Q Consensus 211 --aa~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~-~~lVS~D~ig~ 287 (333)
.-.-..|+|+.-.-++++.++|||+..+-.--++++++++.+.+|+.+.+-..+ +...++...+ .|..-.|--|.
T Consensus 214 ~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~a--p~v~v~~~~~~~P~~~~d~~g~ 291 (334)
T COG0136 214 WKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSA--PGVVVVDNPEDRPQTPLDATGG 291 (334)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCEECCCCEEEEEEECCCCCHHHHHHHHHCCC--CCCEEEECCCCCCCCHHHHCCC
T ss_conf 99889999871889882578999724161520678998569899899999975318--9968986776686583663489
Q ss_pred CCCEEEECCCCEE-ECCCEEEEEEEECCC-HHHHHHHHHHHHH
Q ss_conf 8621683268464-289779999983871-4679999999999
Q gi|254780654|r 288 SYSSIFAADQTKV-VSQNLLRVLVWYDNE-WGFSNRMLDTASA 328 (333)
Q Consensus 288 ~~s~i~D~~~t~v-~~~~~~Ki~~WYDNE-wgYs~rlidl~~~ 328 (333)
....| ++--.- ..++.+++.+==||= ||=|--.+.+++.
T Consensus 292 ~~v~V--GRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE~ 332 (334)
T COG0136 292 DEVSV--GRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAEL 332 (334)
T ss_pred CCEEE--EEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 85577--676634788874799998601135118899999886
No 21
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=99.50 E-value=1.2e-13 Score=109.82 Aligned_cols=233 Identities=21% Similarity=0.293 Sum_probs=171.9
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 898856-6868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 4 KVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 4 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
+|||-| -|.+||..++.|-++ +|.+- . .++| +.-+..|..+...||.+.+-.. .+
T Consensus 1 ~vAiVGATG~VGq~~lk~LeeR---~FP~~---~-------~~~~----------AS~RS~G~~~~F~gke~~v~~~-~~ 56 (350)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER---NFPID---K-------LVLL----------ASERSAGRKVTFKGKELEVEEA-KK 56 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHCC---CCCHH---H-------HHHH----------CCCCCCCCEEEECCCEEEEECC-CC
T ss_conf 9478962674799998764136---78775---5-------6441----------0567888578512753660101-00
Q ss_pred CCCCCCC--CCEEEEECCCCCCCCCCCHHHHCCCCEEEE--ECCCCC-CCEEEEEECCCCCCCC-C-CEEECCCCCCHHH
Q ss_conf 3334465--632786066433321220011058423433--036788-7348984055321222-2-1033057641023
Q gi|254780654|r 83 QDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLV--SAPCKG-VKKTIVYGVNHQSLNK-E-DKVVSNASCTTNC 155 (333)
Q Consensus 83 ~~i~W~~--vDiViEcTG~f~~~~~~~~HL~~GakkVIi--SaP~kd-~~~tiV~GvN~~~~~~-~-~~IiS~aSCTtn~ 155 (333)
+. ...+ +||-+.|-|--.+++.+-+.-+.||= ||= |+-=.| +.|.+|.-||.+++.. . ..||.|.-|+|=.
T Consensus 57 ~n-~F~gekidIAlFSAGgsvSke~aP~a~k~g~~-VIDntS~fR~D~dVPLVVPEVN~~~~~~~~~kgIIANPNCstIq 134 (350)
T TIGR01296 57 EN-SFEGEKIDIALFSAGGSVSKEFAPKAAKAGVI-VIDNTSAFRMDPDVPLVVPEVNLEDLKEFNKKGIIANPNCSTIQ 134 (350)
T ss_pred CC-CCCCCEEEEEEECCCHHHHHHHHHHHHCCCCE-EEECCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEECCCCCHHH
T ss_conf 14-88877033456515313348887888608757-98176200057898634437784776347888814588600777
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCC------------CCCCCCCCCCCC-----------CCCCCCCCCCCCCC----
Q ss_conf 466888754121023221001134532------------223556654530-----------00112365646453----
Q gi|254780654|r 156 LVPVVHVLDKMFGIEKGYMTTVHSYTG------------DQHVLDAGHSDL-----------YRSRAAAISMVPTS---- 208 (333)
Q Consensus 156 laPvlk~l~~~~gI~~g~~TTiH~~t~------------~Q~l~D~~~~d~-----------Rr~Raa~~niIPt~---- 208 (333)
+.++||.||++|+|.+--+.|..|... +|..+.+.-.+. .-...-+.|.||.-
T Consensus 135 mv~~LkPl~~~~~ikrVvVSTYQAVSGAG~~g~~eL~nQtka~~~~~E~~p~i~~~~~~~a~kf~~qIAFN~~P~Id~f~ 214 (350)
T TIGR01296 135 MVVVLKPLHDEAKIKRVVVSTYQAVSGAGNKGVEELKNQTKAVLEGKEKEPEIDALEVLKAKKFPYQIAFNAIPHIDKFK 214 (350)
T ss_pred HHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHCCCCCCCCCC
T ss_conf 98840465630674589997220035427999999899999985245888555543068888826750300001047412
Q ss_pred -CH--H-------HHHHHHHH--HHCCCCCEEEEEECCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHH
Q ss_conf -11--2-------45677776--201787104343123353101123433201-220678899998741
Q gi|254780654|r 209 -TG--A-------AKAVELVL--PNLKGKLDGSSIRVPTPNVSMVDLKCVTSR-DVNIDEINATMKYFA 264 (333)
Q Consensus 209 -Tg--a-------a~ai~~vl--P~l~gkl~g~a~RVPt~~vS~vDlt~~l~k-~~t~e~in~~~~~as 264 (333)
-| = .-=.-|+| |+| |+++.++|||+..|=..=+..++++ +.+.|++.+.|++|-
T Consensus 215 ~dGsGYT~EE~Km~~Et~KImg~~d~--~vSaTCVRvPVf~GHS~S~~iEf~~d~~~~e~~~E~Lk~Ap 281 (350)
T TIGR01296 215 DDGSGYTKEETKMLFETRKIMGIPDL--KVSATCVRVPVFTGHSESVNIEFEKDEISPEDVREVLKNAP 281 (350)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC--CEEEEEEECCCHHCCHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 28786680667889863432388774--45157887411111123210011168878889999734798
No 22
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.39 E-value=4e-11 Score=93.29 Aligned_cols=303 Identities=17% Similarity=0.191 Sum_probs=184.4
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEEC--CCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 61898856-68688999999996888872899960--6889999998875144125567408983653001656542110
Q gi|254780654|r 2 VCKVAING-FGRIGRCILRAAVESRRDDVRIVAIN--DLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTS 78 (333)
Q Consensus 2 ~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaIN--d~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~ 78 (333)
+|||||-| -|=.|+-++|.+.+ +|.++++++- +..-=+.+. |..+-.+...+.. +.....+
T Consensus 3 kikvaIvGatGy~G~ELirlL~~--HP~~ei~~l~aS~~~aGk~~~-----~~~~~~~~~~~p~-------~~~~l~~-- 66 (350)
T PRK08664 3 KLKVGVLGATGLVGQRFVQLLAN--HPWFEVTALAASERSAGKTYG-----EAVRWQLDGPIPE-------EVADLEV-- 66 (350)
T ss_pred CCEEEEECCCCHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCHH-----HHHCCCCCCCCCC-------CCCCEEE--
T ss_conf 77799989842999999999970--999668999965533788415-----5203223466764-------4465079--
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCC--CCCCEEEEEECCCCCCC----------CCCEE
Q ss_conf 1233333446563278606643332122001105842343-30367--88734898405532122----------22103
Q gi|254780654|r 79 IRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPC--KGVKKTIVYGVNHQSLN----------KEDKV 145 (333)
Q Consensus 79 ~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~--kd~~~tiV~GvN~~~~~----------~~~~I 145 (333)
.++++.+|+++|+|+-|+..-.+++-+...+++|.+ || +||-. +++.+.+++.+|.+.+. .+-++
T Consensus 67 -~~~~~~~~~~~DvvF~AlPhg~s~~~~~~l~~~g~~-VIDlSadfRl~~~~p~~~pE~n~~~~~~~~~~~~~~~~~~~l 144 (350)
T PRK08664 67 -VSTDPVDVDDVDIVFSALPSDVAAEVEEEFAKAGKP-VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFI 144 (350)
T ss_pred -EECCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCE-EEECCHHHCCCCCCCEECHHHCHHHHHHHHHHHHHCCCCCCE
T ss_conf -868845743899999989826999999999877988-997862203557884454203888773468877641346657
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHH
Q ss_conf 305764102346688875412102322100113453222355665453000112365646453112----4567777620
Q gi|254780654|r 146 VSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGA----AKAVELVLPN 221 (333)
Q Consensus 146 iS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tga----a~ai~~vlP~ 221 (333)
|+|.-|++.++...|..|.+ +|++.-.+.++.+++.- ++..-..=....|++|...+- ..-+.++|.+
T Consensus 145 IanPGCy~Ta~~LaL~PL~~-~~~~~i~i~~~sgvSGA-------Gk~~~~~~e~~~N~~py~~~~~~~~~~E~~~il~~ 216 (350)
T PRK08664 145 VTNPNCSTIGLTLALKPLMD-FGIERVHVTTMQAISGA-------GYPGVPSMDILDNVIPYIGGEEEKIEKETLKILGK 216 (350)
T ss_pred EECCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCC-------CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 87797188899998899998-59975999944434536-------61457424565485355676432167899998552
Q ss_pred CCC--------CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC--------EEEEE---CCCEEEE
Q ss_conf 178--------7104343123353101123433201220678899998741000048--------57422---5873544
Q gi|254780654|r 222 LKG--------KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKN--------ILGYV---TLPLVSV 282 (333)
Q Consensus 222 l~g--------kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~--------il~~~---~~~lVS~ 282 (333)
+.+ +++....|||+.-|=+.-+.++++++.+.+++.++++++.+.+.-. .+.+. +-|-+..
T Consensus 217 ~~~~~~~~~~~~v~ftphlvP~~RGil~Tiyv~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~p~~~i~v~~~~~~P~~~~ 296 (350)
T PRK08664 217 FEGGKIVPADFKISATCHRVPVIDGHTEAVFVTFKEKVDPEEIIEALENFKGLPQELGLPTAPEKPIIVREEPDRPQPRL 296 (350)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCEE
T ss_conf 22354445686089998982530558999999969999999999999866288632356667887489807898775215
Q ss_pred CCCCCCCCEEEECCCCEEECCCEEEEEEEECCCH-HHHHHHHHHHHHHHH
Q ss_conf 3488786216832684642897799999838714-679999999999750
Q gi|254780654|r 283 DFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEW-GFSNRMLDTASAMAN 331 (333)
Q Consensus 283 D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEw-gYs~rlidl~~~ia~ 331 (333)
|......-++. .......+.+.+.+++=-||=- |=|-|-|--+..|.+
T Consensus 297 ~~~~~~~~~v~-vg~~~~~~~~~l~~~s~iDNL~KGAAGQAVQnmNlM~~ 345 (350)
T PRK08664 297 DRDAGNGMAVS-VGRLREDGIFDIKFVVLGHNTVRGAAGASVLNAELLKK 345 (350)
T ss_pred EEECCCCEEEE-EEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 43158971699-97788079982999999357567699999999999998
No 23
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.30 E-value=1.9e-10 Score=88.92 Aligned_cols=298 Identities=19% Similarity=0.257 Sum_probs=167.5
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 61898856-6868899999999688887289996068899-999988751441255674089836530016565421101
Q gi|254780654|r 2 VCKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSI-ETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 2 ~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~-~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|+||||-| -|-.|+-++|.+.+ ++.++++.+...... +.+.. +|-.|. +.....+ ..
T Consensus 1 m~kVaIvGAtG~vG~eli~lL~~--hp~~ei~~las~~saGk~i~~------~~p~l~------------~~~~~~~-~~ 59 (345)
T PRK00436 1 MIKVAIVGASGYTGGELLRLLLN--HPEVEIVYLTSRSSAGKPLSD------LHPHLR------------GLVDLVL-EP 59 (345)
T ss_pred CCEEEEECCCCHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCHHH------HCCCCC------------CCCCCEE-EE
T ss_conf 91999989661889999999980--998679999757868973778------581103------------7778747-64
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCC--CC----------------CCEEEEEEC---CCC
Q ss_conf 233333446563278606643332122001105842343-30367--88----------------734898405---532
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPC--KG----------------VKKTIVYGV---NHQ 137 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~--kd----------------~~~tiV~Gv---N~~ 137 (333)
.+++++. +++|+|+-|.|.-.+++-+....++|++ || .|+-. +| ..+..|||+ |-+
T Consensus 60 ~~~~~~~-~~~Divf~alp~~~S~~~~~~~~~~g~~-VID~SsdfR~~~~~~~~~~Y~~~h~~~~l~~~~vYGlPE~n~~ 137 (345)
T PRK00436 60 LDPEEIA-AGADVVFLALPHGVSMELAPQLLEAGVK-VIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNRE 137 (345)
T ss_pred CCHHHHC-CCCCEEEECCCHHHHHHHHHHHHHCCCE-EEECCHHHHCCCCCCHHHCCCCCCCCHHHHHHHEECCHHHHHH
T ss_conf 9988942-6999999889838999999999866987-9989701203676432210587778844632220076024366
Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--
Q ss_conf 12222103305764102346688875412102322--10011345322235566545300011236564645311245--
Q gi|254780654|r 138 SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKG--YMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAK-- 213 (333)
Q Consensus 138 ~~~~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g--~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~-- 213 (333)
.+. ..++|+|.-|.+.+....|+.|.++..|+.. .++++-+++..=+-.. .+.- .--...|+.|..-+.-+
T Consensus 138 ~ik-~~~iIANPgC~at~~~laL~PL~~~~li~~~~iiv~a~sg~SGAGk~~~---~~~~-~~e~~~n~~~Y~~~~HrH~ 212 (345)
T PRK00436 138 EIK-GARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKAS---EGSL-FSEVNENLRAYGVGGHRHT 212 (345)
T ss_pred HHH-HCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC---HHHH-HHHHHCCEECCCCCCCCCC
T ss_conf 663-2556007994789999999999983786668469998774453665864---0002-5777245602546787871
Q ss_pred -HHHHHHHHCCC--CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEE--EECCCCCC
Q ss_conf -67777620178--71043431233531011234332012206788999987410000485742258735--44348878
Q gi|254780654|r 214 -AVELVLPNLKG--KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLV--SVDFNHTS 288 (333)
Q Consensus 214 -ai~~vlP~l~g--kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lV--S~D~ig~~ 288 (333)
-+.+.+-.+.+ ++.-...|||+..|=+.-+.++++++.+.+++.++++++-++. ..+.+.+++.. -.|..|+-
T Consensus 213 pEi~q~l~~~~~~~~v~ftp~~vPv~rGi~~ti~~~~~~~~s~~~i~~~l~~~Y~~~--pfV~v~~~~~~P~~~~v~gtn 290 (345)
T PRK00436 213 PEIEQELSGLAGEVVVSFTPHLVPMTRGILATIYARLKDGVTAEDLRAAYEEFYADE--PFVRVLPEGQYPETKSVRGSN 290 (345)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCC--CCEEECCCCCCCCHHHHCCCC
T ss_conf 899999873089971899836637666068999999579863677889999983689--868985899999877816987
Q ss_pred CCEEEECCCCEEECCCEEEEEEEECCCH-HHHHHHHHHHHHHHHC
Q ss_conf 6216832684642897799999838714-6799999999997504
Q gi|254780654|r 289 YSSIFAADQTKVVSQNLLRVLVWYDNEW-GFSNRMLDTASAMANL 332 (333)
Q Consensus 289 ~s~i~D~~~t~v~~~~~~Ki~~WYDNEw-gYs~rlidl~~~ia~~ 332 (333)
+.-| ....--.++.+-+++=.||=. |=|-+-|--+..|-++
T Consensus 291 ~~~i---g~~~d~~~~~l~i~s~~DNL~KGAAgqAVQn~Nl~~g~ 332 (345)
T PRK00436 291 FCDI---GFAVDERTGRLVVVSAIDNLVKGAAGQAVQNMNLMFGL 332 (345)
T ss_pred CEEE---EEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 1899---99980899989999985033430899999999988099
No 24
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=99.04 E-value=3.9e-09 Score=80.27 Aligned_cols=260 Identities=22% Similarity=0.279 Sum_probs=174.9
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEE-----ECCC-CCCCCCCC
Q ss_conf 1898856-686889999999968888-72899960688999999887514412556740898-----3653-00165654
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKI-----IGDT-IDVGLGPI 74 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~-~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~-----~~~~-l~in~~~i 74 (333)
||||+=| -|=.|+.+.+.+-. +| .|+|..+--. ++-+|+-=+++-- .++. =.+-+-+|
T Consensus 1 ~~VavLGaTG~VGq~f~~lL~~--HPr~Fe~~~v~AS------------~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i 66 (358)
T TIGR00978 1 VRVAVLGATGLVGQKFVKLLEK--HPRYFELAKVVAS------------ERSAGKRYGEVVKWREILSGDIPEEVRDLEI 66 (358)
T ss_pred CEEEEEECCCHHHHHHHHHHHH--CCCEEEEEEEEEC------------CCCCCCCHHHHHHHCCCCCCCCCHHHCCCEE
T ss_conf 9689970655468999999752--6981228898836------------8655767445430121236858432347654
Q ss_pred CCCCCCCCC--CCCCCCCCEEEEECCCCCC-CCCCCHHH-HCCCCEEEEECCC----CCCCEEEEEECCCCCCCC-----
Q ss_conf 211012333--3344656327860664333-21220011-0584234330367----887348984055321222-----
Q gi|254780654|r 75 QVTSIRDPQ--DLPWGDVDVAMECTGFFVT-QEKASLHL-SNGSQRVLVSAPC----KGVKKTIVYGVNHQSLNK----- 141 (333)
Q Consensus 75 ~i~~~~~p~--~i~W~~vDiViEcTG~f~~-~~~~~~HL-~~GakkVIiSaP~----kd~~~tiV~GvN~~~~~~----- 141 (333)
.+.+|. ..+-.|||+|+=. .-.+ .+..+..| ++| ++|+|=-+ +++.|.++.-||-+-+.-
T Consensus 67 ---~~~~p~ri~~d~~dVD~vfSA--Lp~~~A~~~E~~la~~G--~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~ 139 (358)
T TIGR00978 67 ---VETEPVRIAEDHKDVDIVFSA--LPSEVAEEVEPKLAEEG--IIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQK 139 (358)
T ss_pred ---ECCCCCEEEECCCCCEEEEEC--CCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCC
T ss_conf ---134743356617982699814--99799999999998569--88987684778888867783335614799998540
Q ss_pred C-----CEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCH----
Q ss_conf 2-----103305764102346688875412102322100113453222355665453000--11236564645311----
Q gi|254780654|r 142 E-----DKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYR--SRAAAISMVPTSTG---- 210 (333)
Q Consensus 142 ~-----~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr--~Raa~~niIPt~Tg---- 210 (333)
+ =.||.|.-|||-.|+--||.|-|.||+++-+++|..|... + .++- +=+-..||||.--|
T Consensus 140 ~RrgW~G~ivtNPNC~t~~lTl~LkPl~d~~~~~~V~v~TmQAvSG-------A--GY~GVp~~~I~dN~iP~I~GEE~K 210 (358)
T TIGR00978 140 ERRGWKGFIVTNPNCTTAGLTLALKPLIDAFGIKKVIVTTMQAVSG-------A--GYPGVPSMDILDNVIPHIGGEEEK 210 (358)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHC-------C--CCCCCCHHHHHCCCCCCCCCHHHH
T ss_conf 0168861799576167887761013464305845699987200014-------8--888875455533616550633589
Q ss_pred HHHHHHHHH-HHCCC--------CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCCEE
Q ss_conf 245677776-20178--------710434312335310112343320122067889999874100004857422-58735
Q gi|254780654|r 211 AAKAVELVL-PNLKG--------KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYV-TLPLV 280 (333)
Q Consensus 211 aa~ai~~vl-P~l~g--------kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~-~~~lV 280 (333)
..+=..|+| =+|++ +++..+.||||..|=+.=+.++|+++.+.|||.++|+++...+.+--|=-. +.|++
T Consensus 211 Ie~E~~KilsGkl~~g~~~PA~~~~~at~~RVPV~~GHt~~v~v~~~~~~d~~EI~~~~~~f~~~Pq~l~lP~~P~~p~~ 290 (358)
T TIGR00978 211 IERETLKILSGKLENGKIEPAEFEVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPII 290 (358)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 87621333344003884642044068998744411164699999866877989999999840677642577988695379
Q ss_pred EECCCCCCCCEE
Q ss_conf 443488786216
Q gi|254780654|r 281 SVDFNHTSYSSI 292 (333)
Q Consensus 281 S~D~ig~~~s~i 292 (333)
=.|==-.|..-+
T Consensus 291 ~~d~edrPQPrl 302 (358)
T TIGR00978 291 VRDEEDRPQPRL 302 (358)
T ss_pred EECCCCCCCCHH
T ss_conf 875886785044
No 25
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=98.45 E-value=3.7e-07 Score=67.31 Aligned_cols=242 Identities=19% Similarity=0.245 Sum_probs=154.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-C-HHHHHHHHHHCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9885668688999999996888872899960688-9-9999988751441255674-08983653001656542110123
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-S-IETMAHLLRYDSVHGRFPG-EVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~-~~~~~~Ll~yDS~hG~~~~-~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|||||+|-||+-|.-+... .+|.++|.+--.. | -+.+|+=+=|+ +|-.-+. .=++++-.|.+.|. -
T Consensus 1 VgiNGYGTIGKRVAdAv~k--QdDMklvGVtKtsPdfEA~~A~e~Gi~-~Y~~~~e~~~~FEeaGi~V~GT-----~--- 69 (335)
T TIGR01546 1 VGINGYGTIGKRVADAVIK--QDDMKLVGVTKTSPDFEAFIAKEKGID-IYVAAEEFLKKFEEAGIKVAGT-----V--- 69 (335)
T ss_pred CCCCCCCCCCHHHHHHHCC--CCCCEEEEECCCCCCHHHHHHHHCCCE-EEECCHHHHHHHHHCCCEEECC-----H---
T ss_conf 9234535622244444136--998237741168983888888767932-6426704431254368704425-----7---
Q ss_pred CCCCCCCCCCEEEEECCC-CCCCCCCCHHHHCCCCEEEEECCCCC-CCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHH
Q ss_conf 333344656327860664-33321220011058423433036788-7348984055321222210330576410234668
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGF-FVTQEKASLHLSNGSQRVLVSAPCKG-VKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPV 159 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~-f~~~~~~~~HL~~GakkVIiSaP~kd-~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laPv 159 (333)
+++ ...+|||+|||=- --.+-+-.-|++.|.|-++=-+=-.+ ++.-|+-=.|-++-=.+ .=+=--||-|++|.==
T Consensus 70 -edL-~ek~DIvVD~TP~G~GaknK~G~Yek~g~kAiFQGGEKaeva~~SF~a~~NY~~alGK-dY~RVVSCNTTgL~RT 146 (335)
T TIGR01546 70 -EDL-LEKVDIVVDATPEGVGAKNKEGIYEKLGLKAIFQGGEKAEVADISFSALANYEEALGK-DYVRVVSCNTTGLVRT 146 (335)
T ss_pred -HHH-HHHCCEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC-CEEEEEEECHHHHHHH
T ss_conf -873-1042888856878744323110366507613643783012442125555106763178-6389984162678876
Q ss_pred HHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 887541210232210011345322235566545300011236564645311----2456777762017871043431233
Q gi|254780654|r 160 VHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTG----AAKAVELVLPNLKGKLDGSSIRVPT 235 (333)
Q Consensus 160 lk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tg----aa~ai~~vlP~l~gkl~g~a~RVPt 235 (333)
|..+++-.+|+...=+-|-= -+||+=+ =|+=.++|.|.+-. =++=+.-|+|+| .|..+|+=|||
T Consensus 147 ln~ind~~~v~kVrAv~vRR-aADp~~v---------KkGPINaivP~P~TvPSHHgpDV~tVi~~l--nI~TmA~~vPT 214 (335)
T TIGR01546 147 LNAINDLSKVEKVRAVMVRR-AADPKEV---------KKGPINAIVPDPATVPSHHGPDVQTVIRDL--NIATMALIVPT 214 (335)
T ss_pred HHHHHHHCCCCEEEEEEEEC-CCCHHHC---------CCCCCCCCCCCCCCCCCCCCCCHHHHHCCC--CCCEEEEECCC
T ss_conf 64332330610589999853-7893342---------618736537831787988776424341235--80012343140
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 531011234332012206788999987410000485742258
Q gi|254780654|r 236 PNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTL 277 (333)
Q Consensus 236 ~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~ 277 (333)
.---.=-+.++|+++++.++|.+.|++- .-||-+..+
T Consensus 215 TlMH~H~i~veLk~~v~~~Di~d~lenT-----pRvlL~~~k 251 (335)
T TIGR01546 215 TLMHVHSIMVELKDKVEKEDILDVLENT-----PRVLLLESK 251 (335)
T ss_pred HHCCCCEEEEEECCCCCHHHHHHHHCCC-----CEEEEEECC
T ss_conf 1214101467735765645687653288-----608987315
No 26
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=98.35 E-value=0.00028 Score=48.47 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=138.5
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCC--CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 961898856-68688999999996888872899960688--999999887514412556740898365300165654211
Q gi|254780654|r 1 MVCKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLN--SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVT 77 (333)
Q Consensus 1 M~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~--~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~ 77 (333)
|+.||+|-| -|=.|.-++|.+.. ++++|+++|.+.. +...
T Consensus 1 M~~kV~I~GasGytG~EL~rlL~~--Hp~vel~~i~~~~~k~~~~----------------------------------- 43 (314)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAG--RSDIELLSIPEAKRKDPAA----------------------------------- 43 (314)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC--CCCEEEEEECCCCCCCHHH-----------------------------------
T ss_conf 982699989988569999999975--9982999967112557556-----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCCCCCCEEEEEECCCCC---CC--CCCEEECCCCC
Q ss_conf 01233333446563278606643332122001105842343-30367887348984055321---22--22103305764
Q gi|254780654|r 78 SIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPCKGVKKTIVYGVNHQS---LN--KEDKVVSNASC 151 (333)
Q Consensus 78 ~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~kd~~~tiV~GvN~~~---~~--~~~~IiS~aSC 151 (333)
. .+. ..++|+|+-|+-.-.+++.+...++.|+| || +||-.. .++..|||.=|-. -+ ...+.|||.-|
T Consensus 44 ~---~~~--~~~~DvvFlalPh~~s~~~v~~~~~~g~k-VIDLSaDfR-l~~~wvYGlPEl~~~~r~~I~~a~~IAnPGC 116 (314)
T PRK11863 44 R---REL--LNAADIAILCLPDDAAREAVALIDNPATR-VIDASTAHR-TAPGWVYGFPELAPGQRERIAAARRVANPGC 116 (314)
T ss_pred H---HHH--HHCCCEEEECCCCHHHHHHHHHHHHCCCE-EEECCCCCC-CCCCCEEECCCCCHHHHHHHHHCCEEECCCC
T ss_conf 7---877--50699999999977899999988627988-998985445-7999773365068778999862986327982
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCC-CCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHH--HCCC
Q ss_conf 102346688875412102322100113453---2223-5566545300011236564645311-2456777762--0178
Q gi|254780654|r 152 TTNCLVPVVHVLDKMFGIEKGYMTTVHSYT---GDQH-VLDAGHSDLYRSRAAAISMVPTSTG-AAKAVELVLP--NLKG 224 (333)
Q Consensus 152 Ttn~laPvlk~l~~~~gI~~g~~TTiH~~t---~~Q~-l~D~~~~d~Rr~Raa~~niIPt~Tg-aa~ai~~vlP--~l~g 224 (333)
-..|..-.+..|-++-=|....--++.+.+ .-=+ +.+..+...+-.++ .|+-|...+ .=+-+..+-- .++.
T Consensus 117 yaTa~iL~L~PL~~~gli~~~~~i~i~a~SG~SGAGk~~~~~~~~~~~~~~~--~~~~~Y~~~~~HrH~pEI~q~~~~~~ 194 (314)
T PRK11863 117 YPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAGGPKGTA--PAFRLYGLGLAHKHLPEMQAHAGLAR 194 (314)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 8999999999999768878888469984102566776653234465421233--45311368767578999999858888
Q ss_pred CCEEEEEECCCCCCHHHHHHHH---HHCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCEEE---ECCCCCCCCEEEECCC
Q ss_conf 7104343123353101123433---201220678899998741000-04857422587354---4348878621683268
Q gi|254780654|r 225 KLDGSSIRVPTPNVSMVDLKCV---TSRDVNIDEINATMKYFAEGD-LKNILGYVTLPLVS---VDFNHTSYSSIFAADQ 297 (333)
Q Consensus 225 kl~g~a~RVPt~~vS~vDlt~~---l~k~~t~e~in~~~~~as~~~-~~~il~~~~~~lVS---~D~ig~~~s~i~D~~~ 297 (333)
+..=.-.-+|..-|=++-+.+. +.+.++.+++.++++++-+++ +-.++...+.|..+ ...+-.+.-|-+-.
T Consensus 195 ~~~F~Phl~p~~RGIl~Tiy~~~~~l~~~~~~~~i~~~y~~~Y~~epFV~v~~~~~~~~~~~v~~~~v~gtN~~~I~v-- 272 (314)
T PRK11863 195 RPIFVPSVGNFRQGMLVTVPLHLDLLPGGPTGEDLHAALADHYAGEAFVRVAPLEESAALDRLDPEALNGTNRLELFV-- 272 (314)
T ss_pred CCCEEEEECCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEE--
T ss_conf 752311155747604699522466517899999999999998689997899478888765633422348996489999--
Q ss_pred CEEECCCEEEEEEEECCCH-HHHHHHHHHHHHHH
Q ss_conf 4642897799999838714-67999999999975
Q gi|254780654|r 298 TKVVSQNLLRVLVWYDNEW-GFSNRMLDTASAMA 330 (333)
Q Consensus 298 t~v~~~~~~Ki~~WYDNEw-gYs~rlidl~~~ia 330 (333)
..--..+.+-+++=.||=. |=|-|-|--+..|-
T Consensus 273 ~~d~~~~~~vv~saIDNL~KGAAGQAVQnmNlm~ 306 (314)
T PRK11863 273 FGNEEHGQAVLVARLDNLGKGASGAAVQNLNLML 306 (314)
T ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 9708999999999831457257999999999871
No 27
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.21 E-value=0.00017 Score=49.86 Aligned_cols=291 Identities=20% Similarity=0.211 Sum_probs=156.8
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCC--CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 961898856-68688999999996888872899960688--999999887514412556740898365300165654211
Q gi|254780654|r 1 MVCKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLN--SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVT 77 (333)
Q Consensus 1 M~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~--~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~ 77 (333)
||+||+|-| =|=.|-.++|.+.. ++++|+..+.... +.... .+|..+.+-+. . -+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~--Hp~ve~~~~ss~~~~g~~~~-------~~~p~l~g~~~------------l-~~ 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAG--HPDVELILISSRERAGKPVS-------DVHPNLRGLVD------------L-PF 58 (349)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC--CCCEEEEEEECHHHCCCCHH-------HHCCCCCCCCC------------C-CC
T ss_conf 981599977887748999999865--99737999631664587068-------75824235345------------5-43
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCC--C----------------CCCEEEEEECCCCC
Q ss_conf 01233333446563278606643332122001105842343-30367--8----------------87348984055321
Q gi|254780654|r 78 SIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPC--K----------------GVKKTIVYGVNHQS 138 (333)
Q Consensus 78 ~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~--k----------------d~~~tiV~GvN~~~ 138 (333)
+.-+++++.-+++|+|+-|+=.-.+++-+...+++|.+ || +||-. + +.-..-|||.-|-.
T Consensus 59 ~~~~~~~~~~~~~DvvFlalPhg~s~~~v~~l~~~g~~-VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~ 137 (349)
T COG0002 59 QTIDPEKIELDECDVVFLALPHGVSAELVPELLEAGCK-VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH 137 (349)
T ss_pred CCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEECCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCC
T ss_conf 35774553015688899906863688989999747994-99887320057777778862777778013315433473129
Q ss_pred CC--CCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCC
Q ss_conf 22--22103305764102346688875412102322100113453222355665453000112---------36564645
Q gi|254780654|r 139 LN--KEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRA---------AAISMVPT 207 (333)
Q Consensus 139 ~~--~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Ra---------a~~niIPt 207 (333)
-. ...+.|+|.-|-.+|.--.++.|-+. |+..... ..++|+.+.-.--||. ...|+.|.
T Consensus 138 ~e~i~~A~lIAnPGCypTa~iLal~PL~~~-~ll~~~~---------~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y 207 (349)
T COG0002 138 REKIRGAKLIANPGCYPTAAILALAPLVKA-GLLDPDS---------PPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPY 207 (349)
T ss_pred HHHHHCCCEEECCCCHHHHHHHHHHHHHHC-CCCCCCC---------CEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 888833877367983288999988899876-9978888---------648997674676787853002551103663335
Q ss_pred CCHHHHHHHHHHHHCC---CCCEEEE---EECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC-C-E
Q ss_conf 3112456777762017---8710434---31233531011234332012206788999987410000485742258-7-3
Q gi|254780654|r 208 STGAAKAVELVLPNLK---GKLDGSS---IRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTL-P-L 279 (333)
Q Consensus 208 ~Tgaa~ai~~vlP~l~---gkl~g~a---~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~-~-l 279 (333)
.-..-+-+..+.-+|. |+....+ -=+|..-|=++-..+.+++..+.+++.+++++.=+++ .++.+-.+ + .
T Consensus 208 ~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~e--pfVrv~~~~~~P 285 (349)
T COG0002 208 GLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGE--PFVRVVPEGGYP 285 (349)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEECEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCC
T ss_conf 445667659999986010167676178520666125089998874188889999999999986799--869970688999
Q ss_pred EEECCCCCCCCEEEECCCCEEECCCEEEEEEEECCCH-HHHHHHHHHHHHH
Q ss_conf 5443488786216832684642897799999838714-6799999999997
Q gi|254780654|r 280 VSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEW-GFSNRMLDTASAM 329 (333)
Q Consensus 280 VS~D~ig~~~s~i~D~~~t~v~~~~~~Ki~~WYDNEw-gYs~rlidl~~~i 329 (333)
--.+.+|+.+.-|. ....-..+.+-+++=.||=- |=|-|-|--+..|
T Consensus 286 ~~k~V~GsN~cdIg---f~~d~~~~rvvvvsaIDNL~KGAAGQAVQnmNim 333 (349)
T COG0002 286 DTKAVAGSNFCDIG---FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNIM 333 (349)
T ss_pred CHHHHCCCCCEEEE---EEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 74551588632898---8875878889999970100234788999999987
No 28
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.04 E-value=1.3e-05 Score=57.16 Aligned_cols=161 Identities=25% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9618988566-868899999999688887289996068899999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAINGF-GRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|||||+|+|+ ||.||.+.+.+.++ +++++++.=|..+.... |+ ++ +...-+....+.++
T Consensus 1 m~ikI~i~Ga~GrMG~~i~~~i~~~--~~~~l~~~i~~~~~~~~----------g~---~~---~~~~~~~~~~~~~~-- 60 (265)
T PRK00048 1 MMIKVGVAGASGRMGRELIEAVEAA--EDLELVAALDRPGSPLV----------GQ---DA---GELAGLGKLGVPIT-- 60 (265)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCC----------CC---CH---HHHCCCCCCCCEEC--
T ss_conf 9459999888887799999999868--99799999946897233----------65---35---66527676784311--
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE-CCCCCCCEEEEEECCCCCCCCCCEEE--CCCCCCHHHH
Q ss_conf 23333344656327860664333212200110584234330-36788734898405532122221033--0576410234
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS-APCKGVKKTIVYGVNHQSLNKEDKVV--SNASCTTNCL 156 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS-aP~kd~~~tiV~GvN~~~~~~~~~Ii--S~aSCTtn~l 156 (333)
.+++++ -.+.|+|||.|-.-.+.+.+...++.+.+-|+=| ...++....+ +.+..+-.|+ +|=|--.|-|
T Consensus 61 ~~l~~~-~~~~DVvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~i------~~~s~~ipil~apNfSlGvnll 133 (265)
T PRK00048 61 DDLEAV-LDDFDVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAAL------REAAKKIPVVIAPNFSVGVNLL 133 (265)
T ss_pred CCHHHH-HCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH------HHHCCCCCEEEECCHHHHHHHH
T ss_conf 789886-055998998998899999999999749977996089998999999------9746588789978558999999
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 668887541210232210011345322235566545
Q gi|254780654|r 157 VPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS 192 (333)
Q Consensus 157 aPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~ 192 (333)
.-+++.+.+.|+=-+-.+.-.|- .+=.|+|+.
T Consensus 134 ~~l~~~aa~~l~~~dieIiE~HH----~~K~DaPSG 165 (265)
T PRK00048 134 MKLAEKAAKYLGDYDIEIIEAHH----RHKVDAPSG 165 (265)
T ss_pred HHHHHHHHHHCCCCCEEEEEECC----CCCCCCCCH
T ss_conf 99999999756657779999068----888999988
No 29
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.97 E-value=2.8e-05 Score=55.02 Aligned_cols=94 Identities=26% Similarity=0.364 Sum_probs=64.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|+||||-|||.||+.+.+.+.+. ..+++++++-+... +...-+-+. .+.+. + .+
T Consensus 1 M~rVgiIG~GaIG~~Va~~l~~g-~~~~~L~~V~~r~~-~~a~~~a~~--------------------~~~~~-~---~~ 54 (265)
T PRK13304 1 MLKIGIVGCGAIANLITKAIDSG-RINAELLAFYDRNL-EKAENLAEK--------------------TGAPA-C---LS 54 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCC-CCCEEEEEEECCCH-HHHHHHHHC--------------------CCCCC-C---CC
T ss_conf 94999986578999999998679-98649999978987-898877641--------------------59971-2---79
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 33334465632786066433321220011058423433036
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP 122 (333)
++++. .+.|+|+||-|.---++-+.+-|++|..-+++|.-
T Consensus 55 ld~l~-~~~DlVVE~A~~~av~~~~~~~L~~G~dlvv~SvG 94 (265)
T PRK13304 55 IDELV-KDVDLVVECASQKAVEDTVPKSLNNGKDVIIMSVG 94 (265)
T ss_pred HHHHH-HCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 89983-38999998989899999999999759989998136
No 30
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.93 E-value=3e-05 Score=54.80 Aligned_cols=147 Identities=15% Similarity=0.181 Sum_probs=85.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|+.||||-|||-||+.+.+.+..+..+..+++++.+.. ....- .+.+. +.... .
T Consensus 1 M~~rVgiiG~GAIG~~Va~~l~~~~~~~~~l~~~~~~~--~~~~~---------~~~~~--------------~~~~~-~ 54 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA--ADLPP---------ALAGR--------------VALLD-G 54 (267)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCH--HHHHH---------HHCCC--------------CCCCC-C
T ss_conf 95179998516999999999861777652899981533--55555---------53256--------------65457-7
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC-CCCCEEEEEECCC--CCCCCCCEEECCCCCCHHHHH
Q ss_conf 3333344656327860664333212200110584234330367-8873489840553--212222103305764102346
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC-KGVKKTIVYGVNH--QSLNKEDKVVSNASCTTNCLV 157 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~-kd~~~tiV~GvN~--~~~~~~~~IiS~aSCTtn~la 157 (333)
-|+.+.| ..|+|+||-|.-.-++-+.+-|++|..-|++|.-. .|.+ +-.-+-+ +.....-.+-|.|.----+|.
T Consensus 55 ~~~lla~-~pDlVvE~As~~Av~~~a~~vL~~G~dlvv~SvGALaD~~--l~~~l~~~A~~~g~~i~ipsGAIgGlD~l~ 131 (267)
T PRK13301 55 LPGLLAW-RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAGAIAGLDYLQ 131 (267)
T ss_pred HHHHHCC-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHCCHH--HHHHHHHHHHHCCCEEEECCCHHHCHHHHH
T ss_conf 5777412-8999998979899999999999759969998237847988--999999999977986997473010468999
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCC
Q ss_conf 688875412102322100113453
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTTVHSYT 181 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TTiH~~t 181 (333)
- . ..-++....+||-.+-.
T Consensus 132 a----a-~~~~~~~v~~~trKpp~ 150 (267)
T PRK13301 132 A----V-AGRDDAEVVYESRKPVA 150 (267)
T ss_pred H----H-HCCCCCEEEEEEECCCH
T ss_conf 8----7-50797469999744811
No 31
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.92 E-value=2.9e-05 Score=54.93 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=76.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6189885668688999999996888872899960688-999999887514412556740898365300165654211012
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
||||||-|||.||+.+.+.+-+. ...++..+-... ..+..-- . -.+...+. .
T Consensus 1 MmrVgiiG~GaIG~~va~~l~~~--~~~~~~~v~~~~~~~~~~~~---------~--------------~~~~~~~~--~ 53 (265)
T PRK13303 1 MMKVAMIGFGAIAAAVYELLEHD--PRLRVDWVIVPEHSVDAVRR---------A--------------LGRAVQVV--S 53 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHHHH---------H--------------HCCCCCCC--C
T ss_conf 92999985468999999998449--97279999946852677875---------3--------------04588644--7
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC-CCCCEEEEEECCCCCCC------CCCEEECCCCCCH
Q ss_conf 3333344656327860664333212200110584234330367-88734898405532122------2210330576410
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC-KGVKKTIVYGVNHQSLN------KEDKVVSNASCTT 153 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~-kd~~~tiV~GvN~~~~~------~~~~IiS~aSCTt 153 (333)
+++++.| +.|+|+||-|.-.-++-+.+-|++|..-+++|.-. .|.. .-++-.+ ..-.|-|.|----
T Consensus 54 ~~~~L~~-~~DlVVE~A~~~av~~~~~~~L~~g~dl~v~SvgALaD~~------~~~~l~~~A~~~~~~i~ipsGAigGl 126 (265)
T PRK13303 54 SVDALAQ-RPDLVVECAGHAALKEHVVPILKAGIDCAVASVGALADEA------LRERLEQAAEAGGARLHLLSGAIGGI 126 (265)
T ss_pred CHHHHHH-CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHCCHH------HHHHHHHHHHHCCCEEEECCCHHHHH
T ss_conf 9889823-7999998988899999999999729988998815857988------99999999986897599726234406
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 23466888754121023221001134
Q gi|254780654|r 154 NCLVPVVHVLDKMFGIEKGYMTTVHS 179 (333)
Q Consensus 154 n~laPvlk~l~~~~gI~~g~~TTiH~ 179 (333)
=.++.. ...+++...+||.-+
T Consensus 127 ----D~l~aa-~~~~i~~V~~~t~K~ 147 (265)
T PRK13303 127 ----DALAAA-KEGGLDEVRYTGRKP 147 (265)
T ss_pred ----HHHHHH-HCCCCCEEEEEEEEC
T ss_conf ----799998-718973899998608
No 32
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.78 E-value=9.8e-05 Score=51.48 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=81.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
.|||||-|||.||+.+.+.+-+. .++++++++-+. +++...-+.+ .++.. ..+. +
T Consensus 6 kmrVgliG~GaIG~~va~~l~~g-~~~~~l~~V~~r-~~~~~~~~~~------~~~~~--------------~~~~---~ 60 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW------GLRRP--------------PPVV---P 60 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHCC-CCCCEEEEEECC-CHHHHHHHHH------HCCCC--------------CCCC---C
T ss_conf 67799988678999999999758-998189999928-8788899987------35898--------------7407---8
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC-CCCCEEEEEECCCCCCC------CCCEEECCCCCCHH
Q ss_conf 333344656327860664333212200110584234330367-88734898405532122------22103305764102
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC-KGVKKTIVYGVNHQSLN------KEDKVVSNASCTTN 154 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~-kd~~~tiV~GvN~~~~~------~~~~IiS~aSCTtn 154 (333)
.+++. ...|+|+||-|.---++-+.+-|.+|..-+++|-.. .|. ++..+ ..-.|-|.|----.
T Consensus 61 ~~~l~-~~~DlVVE~A~~~av~~~~~~~L~~G~dlvv~SvGALad~---------~~l~~~A~~~g~~i~ipsGAigGlD 130 (271)
T PRK13302 61 LDQLA-THADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLRN---------EDLIDLARQNGGQIIVPTGALLGLD 130 (271)
T ss_pred HHHHH-HCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHCCC---------HHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 89960-1899999898989999999999975997899755795692---------9999999966985998070343478
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 3466888754121023221001134
Q gi|254780654|r 155 CLVPVVHVLDKMFGIEKGYMTTVHS 179 (333)
Q Consensus 155 ~laPvlk~l~~~~gI~~g~~TTiH~ 179 (333)
+ ++... .-+++...+||--+
T Consensus 131 ~----l~aa~-~~~l~~V~~~t~K~ 150 (271)
T PRK13302 131 A----VTAAA-EGTIHSVKMITRKP 150 (271)
T ss_pred H----HHHHH-CCCCCEEEEEEECC
T ss_conf 9----99986-28984799996329
No 33
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=97.77 E-value=7.5e-05 Score=52.23 Aligned_cols=233 Identities=21% Similarity=0.276 Sum_probs=128.6
Q ss_pred CC-EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 96-18988566868899999999688887289996068899999988751441255674089836530016565421101
Q gi|254780654|r 1 MV-CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~-ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|. ||+||.|+|=|||.|..++-+. ||+|+|+|=...|+++ +.+.++ ..+|.-
T Consensus 1 M~kiRaaIVGYGNlG~~V~~ai~~~--PDmElvgv~~Rrd~~t-----------------~~va~~--------~~vy~V 53 (326)
T TIGR01921 1 MSKIRAAIVGYGNLGKSVEEAIQQA--PDMELVGVFRRRDAET-----------------LDVAEE--------LAVYAV 53 (326)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHCC--CCCEEEEEEEECCCCC-----------------CCHHHC--------CCHHHH
T ss_conf 9705788862232007999998408--9804899887078875-----------------761122--------520222
Q ss_pred CCCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEE--ECCCCCCCC--CCEEECCCCCCHH
Q ss_conf 23333344-656327860664333212200110584234330367887348984--055321222--2103305764102
Q gi|254780654|r 80 RDPQDLPW-GDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVY--GVNHQSLNK--EDKVVSNASCTTN 154 (333)
Q Consensus 80 ~~p~~i~W-~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~--GvN~~~~~~--~~~IiS~aSCTtn 154 (333)
. ++++. +|||+.|-|+|--+.......||..++-- -=+=|...-|+- -+=|..-.. .-.|||.|=
T Consensus 54 ~--~~~K~~~dvdv~iLC~gsatd~pe~~p~fA~~~nT----vDsfD~H~~Ip~~r~~~DaaA~~~g~VSvis~GW---- 123 (326)
T TIGR01921 54 V--EDEKELEDVDVLILCTGSATDLPEQKPYFAAFINT----VDSFDIHTDIPDLRRTLDAAAKEAGAVSVISAGW---- 123 (326)
T ss_pred H--HHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEC----CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC----
T ss_conf 2--22320288259997388645554345100122101----2365022420789999999998619878998347----
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCC----CCCCCCCCCCCCCCCCC-C---CCCCCCCCCCCCCHHHHHHHHHH----HHC
Q ss_conf 346688875412102322100113----45322235566545300-0---11236564645311245677776----201
Q gi|254780654|r 155 CLVPVVHVLDKMFGIEKGYMTTVH----SYTGDQHVLDAGHSDLY-R---SRAAAISMVPTSTGAAKAVELVL----PNL 222 (333)
Q Consensus 155 ~laPvlk~l~~~~gI~~g~~TTiH----~~t~~Q~l~D~~~~d~R-r---~Raa~~niIPt~Tgaa~ai~~vl----P~l 222 (333)
=|=+ |-|.+.+...|- -||+-=+=|-.-|+|-= | -..|.+=-||.. .|++++= |+|
T Consensus 124 --DPG~------fSi~Rv~geA~lp~g~tyTfwGpGlS~GHsdAvrrIdGVk~Av~yTlP~~----DA~E~~R~GE~~~L 191 (326)
T TIGR01921 124 --DPGL------FSINRVLGEAILPKGITYTFWGPGLSQGHSDAVRRIDGVKAAVQYTLPIK----DALEKVRRGEAEEL 191 (326)
T ss_pred --CCCC------HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCC
T ss_conf --8872------67999999975016861332378866435898876566788864178857----88898626888888
Q ss_pred CCC-CEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCEEEECCCCCCCCEEEE
Q ss_conf 787-1043431233531011234332012206788999987410--00048574225873544348878621683
Q gi|254780654|r 223 KGK-LDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAE--GDLKNILGYVTLPLVSVDFNHTSYSSIFA 294 (333)
Q Consensus 223 ~gk-l~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~--~~~~~il~~~~~~lVS~D~ig~~~s~i~D 294 (333)
.|| ..-. .+=++++.-...|+|.+.++..+. -.+.--+.+..+.---+|.=|=||..-+=
T Consensus 192 Tg~~~H~R------------~~~vvl~eG~~~e~ve~eI~t~~~YFv~yet~V~fi~e~~f~~~~tGMPHGg~vi 254 (326)
T TIGR01921 192 TGKEIHRR------------ECYVVLKEGAEFEKVEAEIKTMADYFVEYETEVNFIDEVDFDLDHTGMPHGGFVI 254 (326)
T ss_pred CCCCEEEE------------EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCEEE
T ss_conf 75650015------------8999736887836899983478776577501798507312120078988575387
No 34
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.52 E-value=0.00025 Score=48.81 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCHH----HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 96189885668688999999996888---872899960688999----99988751441255674089836530016565
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRR---DDVRIVAINDLNSIE----TMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP 73 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~---~~i~ivaINd~~~~~----~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~ 73 (333)
|.|||||-|||-+|+.+++++.++.+ -++++++|-|....- .+....+..+..++. ...++..
T Consensus 1 m~i~I~l~G~G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~----------~~~~~~~ 70 (316)
T PRK08374 1 MEVKVSLFGFGTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKL----------SNIGDYE 70 (316)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCC----------CCCCCHH
T ss_conf 951299993388999999999971887298659999995567634565556655533202543----------4455301
Q ss_pred CCCCCCCCCCCC-CCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCC
Q ss_conf 421101233333-4465632786066433321220011058423433036788734898405532122221033057641
Q gi|254780654|r 74 IQVTSIRDPQDL-PWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCT 152 (333)
Q Consensus 74 i~i~~~~~p~~i-~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCT 152 (333)
+ +. .+|.++ ...++|+++||||--...+....-|++|. =+|||-- .... -++-.-..+-.++..-=.=..|
T Consensus 71 ~--~~-~~~~~i~~~~~~dvvVd~t~~~~~~~~~~~al~~G~--hVVTANK-~~lA--~~~~eL~~~A~~~~~~~~yEas 142 (316)
T PRK08374 71 V--YN-FTPEEIVEEVDPDIVVDVSSWDEAHEWYLTALKEGK--SVVTSNK-PPIA--NHYDELLNEANERNLGYFFEAT 142 (316)
T ss_pred H--CC-CCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCC--CEECCCH-HHHH--HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 2--04-898998348899989987999699999999998899--2997886-9998--5199999999974984999534
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 023466888754121
Q gi|254780654|r 153 TNCLVPVVHVLDKMF 167 (333)
Q Consensus 153 tn~laPvlk~l~~~~ 167 (333)
.-+=.|+++.|.+.+
T Consensus 143 VggGiPiI~~lr~~l 157 (316)
T PRK08374 143 VMAGTPIIGLLRENL 157 (316)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 000203169998751
No 35
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.52 E-value=0.00049 Score=46.91 Aligned_cols=152 Identities=24% Similarity=0.313 Sum_probs=75.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCC-------CCCEEEEEECCCC---------CHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 9618988566868899999999688-------8872899960688---------99999988751441255674089836
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESR-------RDDVRIVAINDLN---------SIETMAHLLRYDSVHGRFPGEVKIIG 64 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~-------~~~i~ivaINd~~---------~~~~~~~Ll~yDS~hG~~~~~v~~~~ 64 (333)
|-+||+|-|||-+|+.+++++.+++ ..++++++|-+.. |++.+..+.+. -+.+..-.
T Consensus 1 m~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~---~~~~~~~~---- 73 (342)
T PRK06270 1 MEMKIALVGFGGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEE---TGKLADYP---- 73 (342)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH---CCCCCCCC----
T ss_conf 96319998768899999999998799999984997899999916543357667898999876641---16500032----
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCC-CCCCCCCCHH----HHCCCCEEEEECCCCCCCEEEEEECCCCC
Q ss_conf 53001656542110123333-344656327860664-3332122001----10584234330367887348984055321
Q gi|254780654|r 65 DTIDVGLGPIQVTSIRDPQD-LPWGDVDVAMECTGF-FVTQEKASLH----LSNGSQRVLVSAPCKGVKKTIVYGVNHQS 138 (333)
Q Consensus 65 ~~l~in~~~i~i~~~~~p~~-i~W~~vDiViEcTG~-f~~~~~~~~H----L~~GakkVIiSaP~kd~~~tiV~GvN~~~ 138 (333)
......++.+ +...++|+|+|||.. ..+.+.+..| |++| +=+|||-- ..-. .. -++
T Consensus 74 ----------~~~~~~~~~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G--~~VVTANK-~~la--~~---~~e 135 (342)
T PRK06270 74 ----------EGGGEIDGLEVIKSAEADVLVEATPTNIETGEPALSHCRKALERG--KHVVTSNK-GPLA--LA---YKE 135 (342)
T ss_pred ----------CCCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC--CEEECCCC-HHHH--HH---HHH
T ss_conf ----------000127899984277999899930446777488999999999779--94999887-1789--88---999
Q ss_pred CC---CCCEEECCCCCCHHHHHHHHHHHHHC---------CCHHHHHCCCC
Q ss_conf 22---22103305764102346688875412---------10232210011
Q gi|254780654|r 139 LN---KEDKVVSNASCTTNCLVPVVHVLDKM---------FGIEKGYMTTV 177 (333)
Q Consensus 139 ~~---~~~~IiS~aSCTtn~laPvlk~l~~~---------~gI~~g~~TTi 177 (333)
+. .++..-=.=.+|.-+=.|+++.|.+. .||.+|...=|
T Consensus 136 L~~lA~~~g~~~~yEasVggGlPiI~~l~~~l~gd~I~~I~GIlnGT~nyI 186 (342)
T PRK06270 136 LKELAKENGVCFRYEATVGGAMPIIRLAKETLAGNDIKSIKGILNGTTNYI 186 (342)
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 999999729849985441115353898985307888458998867715898
No 36
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00065 Score=46.11 Aligned_cols=159 Identities=27% Similarity=0.304 Sum_probs=81.5
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9618988566-868899999999688887289996068899999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAINGF-GRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|||||+|+|. ||.||.+.|++.+. +++++++.-|..+. ...|+--+++ .-++...+.++..
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~----------~~~g~d~ge~------~g~~~~gv~v~~~ 62 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGS----------LSLGSDAGEL------AGLGLLGVPVTDD 62 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC--CCCEEEEEEECCCC----------CCCCCCHHHH------CCCCCCCCEEECC
T ss_conf 9736999757872789999998528--99469999813784----------2234311232------1446557332063
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCE--EECCCCCCHHHHH
Q ss_conf 23333344656327860664333212200110584234330367887348984055321222210--3305764102346
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDK--VVSNASCTTNCLV 157 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~--IiS~aSCTtn~la 157 (333)
+ ..--.+.|++||-|---.+.+.+.--++.|.+-||=|-=.++.... ..+++-.+.. +-.|-|--.|-+-
T Consensus 63 --~-~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~-----~l~~~a~~v~vv~a~NfSiGvnll~ 134 (266)
T COG0289 63 --L-LLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLE-----KLREAAEKVPVVIAPNFSLGVNLLF 134 (266)
T ss_pred --H-HHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-----HHHHHHHHCCEEEECCCHHHHHHHH
T ss_conf --4-3304689889989982546999999997699869979999989999-----9999985389899656407999999
Q ss_pred HHHHHHHHCCC---HHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 68887541210---232210011345322235566545
Q gi|254780654|r 158 PVVHVLDKMFG---IEKGYMTTVHSYTGDQHVLDAGHS 192 (333)
Q Consensus 158 Pvlk~l~~~~g---I~~g~~TTiH~~t~~Q~l~D~~~~ 192 (333)
-+++-.-+.|+ || -+.+=|- +=.|+|+.
T Consensus 135 ~l~~~aak~l~~~DiE--IiE~HHr-----~K~DAPSG 165 (266)
T COG0289 135 KLAEQAAKVLDDYDIE--IIEAHHR-----HKKDAPSG 165 (266)
T ss_pred HHHHHHHHHCCCCCEE--EHHHHCC-----CCCCCCCH
T ss_conf 9999999866778878--6323236-----67889867
No 37
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.31 E-value=0.00081 Score=45.46 Aligned_cols=93 Identities=30% Similarity=0.381 Sum_probs=52.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 18988566-86889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGF-GRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|||+|+|. ||.||.+.+.+.++ +++++++.-|....... ..++.. ..+...+.+. .+
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~~-------------~~d~~~-----~~~~~~~~~~--~~ 58 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEA--PDFELVAAVDRPGSSLL-------------GSDAGE-----LAGPLGVPVT--DD 58 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCC-------------CCCCCC-----CCCCCCCEEC--CC
T ss_conf 98999889887899999999858--99689999943896122-------------543100-----1467871112--44
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE
Q ss_conf 3333446563278606643332122001105842343
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL 118 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI 118 (333)
.+.+ -.+.|+|||-|-.-...+.++..++.|++-|+
T Consensus 59 ~~~~-~~~~DVvIDFS~p~~~~~~~~~~~~~~~~~Vi 94 (122)
T pfam01113 59 LEEV-LADADVLIDFTTPEATLENLELALKHGKPLVI 94 (122)
T ss_pred HHHH-CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7775-15788899906878999999999967998899
No 38
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.30 E-value=0.0053 Score=40.15 Aligned_cols=219 Identities=20% Similarity=0.292 Sum_probs=128.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6189885668688999999996888872899960688-999999887514412556740898365300165654211012
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
.+|++|-|-|-||.-++--++.+ +-++.++.--+. +.+-+++-- ++. +....+. |.-+-+
T Consensus 1 k~~vAIiGsGnIGtDLm~Ki~rS--~~le~~~~vG~dp~S~GL~rA~-------~lG--v~~s~~G-------id~ll~- 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARAR-------ELG--VKTSAEG-------VDGLLA- 61 (285)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC--CCCCEEEEEECCCCCHHHHHHH-------HCC--CCCCCCC-------HHHHHH-
T ss_conf 93699989983389999998667--8721699982488982899999-------849--9663768-------898960-
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 33333446563278606643332122001105842343303678873489840553212222103305764102346688
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVV 160 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laPvl 160 (333)
. .++|+|+|||..+.-.+.+...-+.| +++|==-|+ ..-+.+|+-||-++.- +++=++.-+|-..|-.|++
T Consensus 62 ~------~~idiVFDATSA~aH~~h~~~l~~~g-~~~IDLTPA-aiGp~~VP~VNl~~~l-~~~NvNMVTCGGQAtiPiv 132 (285)
T TIGR03215 62 N------PDIDIVFDATSAKAHARHARLLAELG-KIVIDLTPA-AIGPYVVPAVNLDEHL-DAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred C------CCCCEEEECCCHHHHHHHHHHHHHCC-CEEEECCCC-CCCCEEECCCCHHHHC-CCCCCCEEEECCCCCCHHH
T ss_conf 9------99788996698467999999999759-979978810-1597545553878954-6888633765584301899
Q ss_pred HHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC--CC-CC
Q ss_conf 8754121023221001134532223556654530001123656464531124567777620178710434312--33-53
Q gi|254780654|r 161 HVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRV--PT-PN 237 (333)
Q Consensus 161 k~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RV--Pt-~~ 237 (333)
..+.....|..+- |.+--++... |++...||=--+..-++|+.++= |--.|.++=+ |- |-
T Consensus 133 ~avsrv~~V~Y~E---iVasiaS~Sa----------GPgTR~NIDEf~~TT~~Ai~~~g----Ga~~~KaIiilNPA~Pp 195 (285)
T TIGR03215 133 AAISRVAPVHYAE---IVASIASRSA----------GPGTRANIDEFTETTSRALEQVG----GAKKGKAIIILNPAEPP 195 (285)
T ss_pred HHHHHCCCCCEEE---EEEEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHC----CCCCCEEEEEECCCCCC
T ss_conf 9875035432799---8876400367----------82566536888998899999865----96541289995798998
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 1011234332012206788999987410
Q gi|254780654|r 238 VSMVDLKCVTSRDVNIDEINATMKYFAE 265 (333)
Q Consensus 238 vS~vDlt~~l~k~~t~e~in~~~~~as~ 265 (333)
.-+-|-.+.+-+..+.+.|.+.+.++.+
T Consensus 196 ~~Mr~Tv~~~~~~~d~~~i~~sv~~mv~ 223 (285)
T TIGR03215 196 LMMRDTIYCLVEDPDEDAIEASVEEMVA 223 (285)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 4300168996588998999999999999
No 39
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00053 Score=46.67 Aligned_cols=101 Identities=27% Similarity=0.344 Sum_probs=56.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC-------CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 96189885668688999999996888-------87289996068899999988751441255674089836530016565
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRR-------DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP 73 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~-------~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~ 73 (333)
|++||+|-|||-+|+.++|++.+++. .++++++|-+....... .+|-. +.........+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~----~~~~~----~~~~~~~~~~~~----- 68 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR----DLDLL----NAEVWTTDGALS----- 68 (333)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCCCC----CHHHHEECCCCC-----
T ss_conf 54899998337142999999998268887632872699999961530113----56653----323430055324-----
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCC---HHHHCCCCEEEEECC
Q ss_conf 42110123333344656327860664-33321220---011058423433036
Q gi|254780654|r 74 IQVTSIRDPQDLPWGDVDVAMECTGF-FVTQEKAS---LHLSNGSQRVLVSAP 122 (333)
Q Consensus 74 i~i~~~~~p~~i~W~~vDiViEcTG~-f~~~~~~~---~HL~~GakkVIiSaP 122 (333)
...+.+.-.++|+|+|++|. ....+.+. ..|++| |-++||-
T Consensus 69 ------~~~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~G--khVVTaN 113 (333)
T COG0460 69 ------LGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENG--KHVVTAN 113 (333)
T ss_pred ------CCHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC--CEEECCC
T ss_conf ------42766504568879855766687412389999999759--9699789
No 40
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=97.08 E-value=0.0013 Score=44.08 Aligned_cols=85 Identities=27% Similarity=0.329 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 668688999999996888-8728999606889999998875144125567408983653001656542110123333-34
Q gi|254780654|r 9 GFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQD-LP 86 (333)
Q Consensus 9 GfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~~-i~ 86 (333)
|||.||+.++|++.+++. .++++++|-|... .+.+ + . .....+.+ ..++.+ +.
T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~-------~~~~----~---~---------~~~~~~~~--~~d~~~ll~ 55 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDL-------LSKA----R---A---------ALLGDEPV--TLDLDDLVA 55 (116)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCH-------HHCC----C---C---------CCCCCCEE--ECCHHHHHC
T ss_conf 98702899999999492035679999984783-------4323----2---1---------24666715--779999961
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE
Q ss_conf 465632786066433321220011058423433
Q gi|254780654|r 87 WGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV 119 (333)
Q Consensus 87 W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi 119 (333)
+.++|+|+||+|.-.-++-..+-|++|. .|+.
T Consensus 56 ~~~iDvVVE~~g~~~~~~~~~~aL~~Gk-hVVT 87 (116)
T pfam03447 56 DPRPDVVVECASSEAVAEYVLKALKAGK-HVVT 87 (116)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCC-EEEE
T ss_conf 8899899988994899999999998799-8999
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.06 E-value=0.003 Score=41.77 Aligned_cols=221 Identities=20% Similarity=0.272 Sum_probs=128.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688-9999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
+|++|-|-|-||.-++--++.+ +-++.++.--+. +.+-+++-- ++. +....+. |.-+
T Consensus 5 ~~vAIiGsGnIGtDLm~Ki~Rs--~~le~~~~vG~dp~S~GL~rA~-------~lG--v~ts~~G-------Id~l---- 62 (298)
T PRK08300 5 IKVAIIGSGNIGTDLMIKILRS--PHLEPVAMVGIDPESDGLARAR-------RLG--VATTAEG-------IDGL---- 62 (298)
T ss_pred CEEEEECCCCHHHHHHHHHHCC--CCEEEEEEEECCCCCHHHHHHH-------HCC--CCCCCCC-------HHHH----
T ss_conf 3499988883389999998657--7610699980598984999999-------849--9663767-------9999----
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 33334465632786066433321220011058423433036788734898405532122221033057641023466888
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVH 161 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laPvlk 161 (333)
...-.++++|+|+|||..+--++.+...-+.| +++|==-|+ ..-|.+|+-||-++.- +++=++.-+|-..|-.|++.
T Consensus 63 l~~~~~~~idiVFDATSA~aH~~h~~~l~~~g-~~~IDLTPA-aiGp~~VP~VNl~~~l-~~~NvNMVTCGGQAtiPiv~ 139 (298)
T PRK08300 63 LAHPEFDDIDIVFDATSAGAHVENAAKLRELG-VRVIDLTPA-AIGPYCVPAVNLDEHL-DAPNVNMVTCGGQATIPIVA 139 (298)
T ss_pred HHCCCCCCCCEEEECCCHHHHHHHHHHHHHCC-CEEEECCCC-CCCCEEECCCCHHHHC-CCCCCCEEEECCCHHHHHHH
T ss_conf 61833568788997898066899999999739-879967700-2698787637789955-79986436555730218999
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC---CCC
Q ss_conf 75412102322100113453222355665453000112365646453112456777762017871043431233---531
Q gi|254780654|r 162 VLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPT---PNV 238 (333)
Q Consensus 162 ~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt---~~v 238 (333)
.+.....|+.+-+ .+--++... |++...||=--+..-++|+.++ .|--.|.++=+=- |-.
T Consensus 140 Avsrv~~V~YaEi---VasiaS~Sa----------GPgTR~NIDEf~~TT~~Ai~~~----gGa~~~KaIiilNPA~Pp~ 202 (298)
T PRK08300 140 AVSRVAPVHYAEI---VASIASKSA----------GPGTRANIDEFTETTSRAIEQV----GGAARGKAIIILNPAEPPL 202 (298)
T ss_pred HHHHCCCCCEEEE---EEEEHHCCC----------CHHHHHHHHHHHHHHHHHHHHH----CCCCCCEEEEEECCCCCCC
T ss_conf 9874276317998---865312257----------8467655799999899999985----5976411899957988983
Q ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHC
Q ss_conf 011234332-012206788999987410
Q gi|254780654|r 239 SMVDLKCVT-SRDVNIDEINATMKYFAE 265 (333)
Q Consensus 239 S~vDlt~~l-~k~~t~e~in~~~~~as~ 265 (333)
-+-|-.+.+ +.+.+.+.|.+.+.++.+
T Consensus 203 ~Mr~Tv~~~~~~~~d~~~I~~sv~~mv~ 230 (298)
T PRK08300 203 IMRDTVYCLTPDDADQDAIRASVAAMVE 230 (298)
T ss_pred CHHHEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 3201688872688998999999999999
No 42
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.02 E-value=0.0024 Score=42.41 Aligned_cols=150 Identities=24% Similarity=0.205 Sum_probs=87.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
++|||-|.|+||..+++.+.+++ -+++++++-|. +.+...++.+ |+ .++.. .+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~~-----------------~~~~~-----s~i 54 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--SV-----------------GRRCV-----SDI 54 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHCCC-CCEEEEEEECC-CHHHHHHHHH--HC-----------------CCCCC-----CCH
T ss_conf 95789823378899999986688-64369999448-8788888886--03-----------------88763-----567
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC-CCCCE-EEEEECCCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 33344656327860664333212200110584234330367-88734-89840553212222103305764102346688
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC-KGVKK-TIVYGVNHQSLNKEDKVVSNASCTTNCLVPVV 160 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~-kd~~~-tiV~GvN~~~~~~~~~IiS~aSCTtn~laPvl 160 (333)
.+.- .++|+++||.+.-.-++-..+-|++|..-+++|--. .|... .-..++-.. -...-.+.|.|.----
T Consensus 55 de~~-~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~-~~~rv~~pSGAiGGlD------ 126 (255)
T COG1712 55 DELI-AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKC-GGARVYLPSGAIGGLD------ 126 (255)
T ss_pred HHHH-HCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHH------
T ss_conf 7773-0244254307889999986999965998899951220686799999999853-8947993376401278------
Q ss_pred HHHHHC--CCHHHHHCCCCCCCCCCCCCC
Q ss_conf 875412--102322100113453222355
Q gi|254780654|r 161 HVLDKM--FGIEKGYMTTVHSYTGDQHVL 187 (333)
Q Consensus 161 k~l~~~--~gI~~g~~TTiH~~t~~Q~l~ 187 (333)
.|... =+|++.-+||.-++-+-|-=+
T Consensus 127 -~l~aar~g~i~~V~lttrKpp~~lg~dl 154 (255)
T COG1712 127 -ALAAARVGGIEEVVLTTRKPPAELGIDL 154 (255)
T ss_pred -HHHHHHCCCEEEEEEEEECCHHHHCCCC
T ss_conf -8887432770279997206847827673
No 43
>PRK10206 putative dehydrogenase; Provisional
Probab=96.74 E-value=0.0089 Score=38.66 Aligned_cols=97 Identities=28% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 961898856686889999999968888728999606889-9999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS-IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~-~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|+||+||-|||.+||.+.--.+....+.+++++|-+..+ .+..+. +++ .++++
T Consensus 1 m~irvaiiG~G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~~~~~a~---------~~~---------------~~~~~-- 54 (345)
T PRK10206 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP---------IYS---------------HIHFT-- 54 (345)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH---------HCC---------------CCCEE--
T ss_conf 9247999926499999989999638995799999788761888887---------769---------------98122--
Q ss_pred CCCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 23333344-6563278606643332122001105842343303678
Q gi|254780654|r 80 RDPQDLPW-GDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK 124 (333)
Q Consensus 80 ~~p~~i~W-~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k 124 (333)
.+++++-= .++|+|+=||-...-.+-+.+-|++| |.|++--|..
T Consensus 55 ~~~~~ll~~~~id~V~i~tP~~~H~~~a~~al~aG-khV~~EKP~~ 99 (345)
T PRK10206 55 SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPFT 99 (345)
T ss_pred CCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCC
T ss_conf 89999954999999998799578999999999789-9289803664
No 44
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.47 E-value=0.0094 Score=38.51 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=70.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC-----CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688-----8872899960688999999887514412556740898365300165654211
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESR-----RDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVT 77 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~-----~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~ 77 (333)
|||||-|||-+|+.++|++.+++ ..++++++|-|... .+++.+ |-....+....+.-.+......
T Consensus 1 i~I~l~G~G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~-----~~~~~~---gid~~~~~~~~~~~~~~~~~~~-- 70 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKL-----SYYNER---GLDIGKIISYKEKGRLEEIDYE-- 70 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCH-----HCCCCC---CCCHHHHHCCCCCCCCCCCCHH--
T ss_conf 979999578899999999997499998489937999996101-----014656---8898885212232344444200--
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCC----CHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCH
Q ss_conf 01233333446563278606643332122----00110584234330367887348984055321222210330576410
Q gi|254780654|r 78 SIRDPQDLPWGDVDVAMECTGFFVTQEKA----SLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTT 153 (333)
Q Consensus 78 ~~~~p~~i~W~~vDiViEcTG~f~~~~~~----~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTt 153 (333)
...+.++-=.++|+++|||+...+.+.. ..-|+.| |=+|||-- .. .--+|-.-..+-.++..-=.=..+.
T Consensus 71 -~~~~~~~~~~~~dvive~~~~~~~g~~~~~~~~~aL~~G--khVVTANK-~~--la~~~~eL~~lA~~~~~~~~yEAsV 144 (326)
T PRK06392 71 -KIKFDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHG--IDVVTANK-SG--LANHWHDIMDSASKNRRIIRYEATV 144 (326)
T ss_pred -CCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEECCCC-CH--HHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf -044456645689879993027754422699999999879--96997796-06--6661999999999809849997540
Q ss_pred HHHHHHHHHHHHC---------CCHHHHHCCCCC
Q ss_conf 2346688875412---------102322100113
Q gi|254780654|r 154 NCLVPVVHVLDKM---------FGIEKGYMTTVH 178 (333)
Q Consensus 154 n~laPvlk~l~~~---------~gI~~g~~TTiH 178 (333)
-+=.|+++.+.+. .||.+|...=|-
T Consensus 145 ~gGiPii~~l~~~l~~~~I~~i~GIlNGT~NyIL 178 (326)
T PRK06392 145 AGGVPLFSLRDYSTLPSRIKNFRGIVSSTINYVI 178 (326)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHH
T ss_conf 3662317988867646885079999827589999
No 45
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=96.44 E-value=0.014 Score=37.31 Aligned_cols=95 Identities=32% Similarity=0.340 Sum_probs=66.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
|||||-|.|++|+..++.+.+. .+++++++|-|. +.+....+-+. ++ +..+ .+.
T Consensus 1 iki~iiG~G~~g~~~~~~~~~~-~~~~~i~ai~d~-~~~~~~~~~~~------~~----------------~~~~--~~~ 54 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRALNES-QDGAELVGVLDP-DPARAEAVAES------FG----------------VPAY--SDL 54 (120)
T ss_pred CEEEEEECHHHHHHHHHHHHHC-CCCCEEEEEECC-CHHHHHHHHHH------HC----------------CCEE--CCH
T ss_conf 9899990779999999999855-999789999829-99999999998------39----------------9678--869
Q ss_pred CCC-CCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 333-446563278606643332122001105842343303678
Q gi|254780654|r 83 QDL-PWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK 124 (333)
Q Consensus 83 ~~i-~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k 124 (333)
+++ .=.++|.|+=||-...-.+-...-+++| +.|++--|..
T Consensus 55 ~~~l~~~~iD~v~I~tp~~~H~~~~~~~l~~g-~~v~~EKP~~ 96 (120)
T pfam01408 55 EELLADPDVDAVSVATPPGLHFELALAALEAG-KHVLVEKPLA 96 (120)
T ss_pred HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC-CEEEEECCCC
T ss_conf 99973778898999087461899999999819-9899968981
No 46
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=96.42 E-value=0.004 Score=40.93 Aligned_cols=112 Identities=23% Similarity=0.229 Sum_probs=71.0
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 898856-686889999999968888728999606889--99999887514412556740898365300165654211012
Q gi|254780654|r 4 KVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNS--IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 4 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
||||-| -|-+|.-++|.+.+ ++.++++++-.... -+.+ ...|+.+. +.....+ .
T Consensus 1 kvaIiGatGyvG~eLirlL~~--hp~~~i~~l~~s~~saG~~~------~~~~~~~~------------~~~~~~~---~ 57 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAE--HPPLELVALVASSRSAGKKV------AFAGPWLT------------GGVDLLL---E 57 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCCH------HHHCCCCC------------CCCCCEE---E
T ss_conf 999989361999999999971--88755137885056589601------44165424------------6666447---7
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECC--CCCCCEEEEEECCCCCC
Q ss_conf 333334465632786066433321220011058423433-036--78873489840553212
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAP--CKGVKKTIVYGVNHQSL 139 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP--~kd~~~tiV~GvN~~~~ 139 (333)
++++..|.++|+|+.|++.-.+++-....+++|+ +||= |+- .++..+..+.-+|-+.+
T Consensus 58 ~~~~~~~~~~Dvvf~alp~~~s~~~~~~~~~~g~-~VIDlS~dfRl~~~~~y~lpEiN~~~i 118 (121)
T pfam01118 58 DVDPEDLKDVDIVFFALPAGVSKELAPKLLEAGA-VVIDLSSAFRMDDDVPYVLPEVNREAI 118 (121)
T ss_pred ECCHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC-EEEECCHHHCCCCCCCEECCCCCHHHH
T ss_conf 5897785389899983876899999999871598-998785675178998579998699998
No 47
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.36 E-value=0.01 Score=38.31 Aligned_cols=93 Identities=25% Similarity=0.343 Sum_probs=53.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-------CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 618988566868899999999688-------8872899960688999999887514412556740898365300165654
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESR-------RDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPI 74 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~-------~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i 74 (333)
.+||||-|||-+|+.++|.+.+++ ..++++++|-+...- + +.. ++-...
T Consensus 3 ~ikIgl~G~GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~--------------k-~r~---------~~~~~~ 58 (432)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE--------------K-DRG---------VDLSGY 58 (432)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC--------------C-CCC---------CCCCCC
T ss_conf 5389999878069999999998099999986997699999968975--------------3-558---------999855
Q ss_pred CCCCCCCCCCCCCC-CCCEEEEECCCC-CCCCCCCHHHHCCCCEEEEECC
Q ss_conf 21101233333446-563278606643-3321220011058423433036
Q gi|254780654|r 75 QVTSIRDPQDLPWG-DVDVAMECTGFF-VTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 75 ~i~~~~~p~~i~W~-~vDiViEcTG~f-~~~~~~~~HL~~GakkVIiSaP 122 (333)
.++ .||.++--+ ++|+|+|..|-. ..++-...-|++| |=++||-
T Consensus 59 ~~t--~d~~~i~~d~~idivVEliGG~~~A~~~i~~AL~~G--khVVTAN 104 (432)
T PRK06349 59 LLT--TDPEELVNDPDIDIVVELMGGIEPARELILAALEAG--KHVVTAN 104 (432)
T ss_pred EEE--CCHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CCEEECC
T ss_conf 554--799999438999899996699507999999999859--9689258
No 48
>KOG4777 consensus
Probab=96.23 E-value=0.011 Score=38.17 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=125.6
Q ss_pred CCE-EEE-EEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 961-898-856-68688999999996888872899960688999999887514412556740898365300165654211
Q gi|254780654|r 1 MVC-KVA-ING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVT 77 (333)
Q Consensus 1 M~i-kIg-ING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~ 77 (333)
|.+ |++ +-| -|-.|.-++-.+-+. +.|++..........---| -.-|+|+.+.-.-+. -+.+.+
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~y-----a~a~~wkqt~~lp~~-----~~e~~V- 67 (361)
T KOG4777 1 MALKKSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRY-----AFAGNWKQTDLLPES-----AHEYTV- 67 (361)
T ss_pred CCCCCCCCEEECCCHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCE-----EECCCCHHCCCCCCH-----HHHHHH-
T ss_conf 973313552103431477899986169--8513423013331469815-----760441120246503-----434137-
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC----CCCCEEEEEECCCCCCCC-CC---------
Q ss_conf 0123333344656327860664333212200110584234330367----887348984055321222-21---------
Q gi|254780654|r 78 SIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC----KGVKKTIVYGVNHQSLNK-ED--------- 143 (333)
Q Consensus 78 ~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~----kd~~~tiV~GvN~~~~~~-~~--------- 143 (333)
.+-+++ .+.++|||+-.-+.--..|--..+.++| -+|+|-.. .+..|.+|.-||-+-+|. ..
T Consensus 68 ~ec~~~--~F~ecDIvfsgldad~ageiek~f~eag--~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~ 143 (361)
T KOG4777 68 EECTAD--SFNECDIVFSGLDADIAGEIEKLFAEAG--TIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGK 143 (361)
T ss_pred HHCCHH--HCCCCCEEEECCCCHHHHHHHHHHHHCC--EEEEECCHHCCCCCCCCEEECCCCHHHHHHHEECCCCCCCCC
T ss_conf 555840--2366558985278236656547788668--699867143025799745733458778425302222588899
Q ss_pred -EEECCCCCCHHHHHHHHHHHHHCCC-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH----H
Q ss_conf -0330576410234668887541210-232210011345322235566545300011236564645311245677----7
Q gi|254780654|r 144 -KVVSNASCTTNCLVPVVHVLDKMFG-IEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVE----L 217 (333)
Q Consensus 144 -~IiS~aSCTtn~laPvlk~l~~~~g-I~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~----~ 217 (333)
-||.+..|.|-.+...+|.|+++|| |..-..+|..+...---. |.- -+-.-..||+|---|--.-++ +
T Consensus 144 G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~a---pgv---~~vdildnilp~iggee~k~ewet~k 217 (361)
T KOG4777 144 GAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAA---PGV---ELVDILDNILPGIGGEENKFEWETAK 217 (361)
T ss_pred CEEEECCCCCEEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCC---CCC---HHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 528966988703687665467763154455323445563157867---773---27788874347889620045678887
Q ss_pred HHHH-----CC------CCCEEEEEECCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHH
Q ss_conf 7620-----17------8710434312335310112343320--1220678899998741
Q gi|254780654|r 218 VLPN-----LK------GKLDGSSIRVPTPNVSMVDLKCVTS--RDVNIDEINATMKYFA 264 (333)
Q Consensus 218 vlP~-----l~------gkl~g~a~RVPt~~vS~vDlt~~l~--k~~t~e~in~~~~~as 264 (333)
+|-. +. .+.....-|||+.++-+-=..+++. -..+.+++.+++.+.-
T Consensus 218 iL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv 277 (361)
T KOG4777 218 ILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYV 277 (361)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 653047752145425777654212346675670689988860688886899999998646
No 49
>PRK11579 putative oxidoreductase; Provisional
Probab=95.99 E-value=0.04 Score=34.41 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=65.1
Q ss_pred CEEEEEECCCHHHHH-HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 618988566868899-9999996888872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 2 VCKVAINGFGRIGRC-ILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGfGRIGR~-v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
.||+||-|.|+||+. -++++.+ .+++++++|-|. +.+.... .++ .++++ .
T Consensus 4 ~irvgiiG~G~~~~~~h~~~~~~--~~~~~l~av~d~-~~~~~~a---------~~~---------------~~~~~--~ 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAG--TPGLELAAVSSS-DETKVKA---------DWP---------------TVTVV--S 54 (346)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECC-CHHHHHC---------CCC---------------CCCEE--C
T ss_conf 87599993629999999999962--999199999798-9999950---------258---------------99538--9
Q ss_pred CCCCC-CCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 33333-446563278606643332122001105842343303678
Q gi|254780654|r 81 DPQDL-PWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK 124 (333)
Q Consensus 81 ~p~~i-~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k 124 (333)
+++++ .-.++|.|+=||=...-.+-+..-|++| |.|++--|..
T Consensus 55 ~~~~ll~~~~id~V~i~tp~~~H~~~~~~al~aG-khv~~EKP~a 98 (346)
T PRK11579 55 EPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPFT 98 (346)
T ss_pred CHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCC-CCEEECCCCC
T ss_conf 9999945999999999799678999999999879-9489538767
No 50
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=95.99 E-value=0.009 Score=38.65 Aligned_cols=34 Identities=32% Similarity=0.659 Sum_probs=29.8
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 61898856-686889999999968888728999606
Q gi|254780654|r 2 VCKVAING-FGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 2 ~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
+|||+|+| -||+||.+.+.+.+. .+++++|+.=|
T Consensus 1 ~ikvav~GA~GRMG~~~ik~~~~~-ye~l~Lv~A~~ 35 (281)
T TIGR00036 1 LIKVAVAGAAGRMGRELIKAVLQA-YEGLKLVAAFE 35 (281)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHH-CCCEEEEEEEE
T ss_conf 983588478873469999999974-89816788886
No 51
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.84 E-value=0.072 Score=32.72 Aligned_cols=104 Identities=20% Similarity=0.367 Sum_probs=59.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC---------CCHHHHHHHHHHCCC-CCCCCCEEEEECCCCCCCCC
Q ss_conf 18988566868899999999688887289996068---------899999988751441-25567408983653001656
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL---------NSIETMAHLLRYDSV-HGRFPGEVKIIGDTIDVGLG 72 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~---------~~~~~~~~Ll~yDS~-hG~~~~~v~~~~~~l~in~~ 72 (333)
.++.|-|||-.|+...+.+.+. +-.||++.|. .|.+.+.++.+.-.. .|+...-++.. .
T Consensus 253 k~vaIqGfGNVg~~aA~kl~e~---GakVVavSDs~G~Iy~~~Gid~e~l~~~~~~k~~~~g~l~~y~~~~--------~ 321 (469)
T PTZ00079 253 KTAVVSGSGNVAQYCVEKLLQL---GAKVLTLSDSNGYIVEPNGFTEEKLAHLMELKNEKRGRIKEYLKHS--------S 321 (469)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCC--------C
T ss_conf 8899976673899999999976---9989999838943988898899999999999851166344565338--------8
Q ss_pred CCCCCCCCCCCCCCCC-CCCEEEEEC-CCCCCCCCCCHHHHCCCCEEEEEC
Q ss_conf 5421101233333446-563278606-643332122001105842343303
Q gi|254780654|r 73 PIQVTSIRDPQDLPWG-DVDVAMECT-GFFVTQEKASLHLSNGSQRVLVSA 121 (333)
Q Consensus 73 ~i~i~~~~~p~~i~W~-~vDiViEcT-G~f~~~~~~~~HL~~GakkVIiSa 121 (333)
...++ +.+-+|. ++||.+-|. .--.+.+.+..-.+.|||-|+=.|
T Consensus 322 ~a~~~----~~~~~w~~~cDIliPcA~qneI~~~nA~~l~~~g~k~V~EGA 368 (469)
T PTZ00079 322 TAKYF----ENEKPWEVPCDLAFPCATQNEINLDDAKLLVKNGCKLVGEGA 368 (469)
T ss_pred CCEEC----CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 70455----898622466769965555578788999999848866999678
No 52
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.60 E-value=0.11 Score=31.56 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=55.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC---------CCHHHHHHHHHHCCCC-CCCCCEEEEECCCCCCCCC
Q ss_conf 18988566868899999999688887289996068---------8999999887514412-5567408983653001656
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL---------NSIETMAHLLRYDSVH-GRFPGEVKIIGDTIDVGLG 72 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~---------~~~~~~~~Ll~yDS~h-G~~~~~v~~~~~~l~in~~ 72 (333)
.+++|-|||-+|+.+.|.+.+ .+..||+|.|. .|.+.+..|.++.... +....-+....+
T Consensus 39 ~~vaIQGfGnVG~~aA~~l~e---~GakvVaVsD~~G~i~~~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~~------- 108 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLE---LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGT------- 108 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC-------
T ss_conf 999998977999999999997---7997999985785088799998899999999997468710244413898-------
Q ss_pred CCCCCCCCCCCCCCCC-CCCEEEEECCC-CCCCCCCCHHHHCCCCEEEEEC
Q ss_conf 5421101233333446-56327860664-3332122001105842343303
Q gi|254780654|r 73 PIQVTSIRDPQDLPWG-DVDVAMECTGF-FVTQEKASLHLSNGSQRVLVSA 121 (333)
Q Consensus 73 ~i~i~~~~~p~~i~W~-~vDiViEcTG~-f~~~~~~~~HL~~GakkVIiSa 121 (333)
..+ .+ .+-.|. ++||+|-|--- --+.+.+..--.+|+|-|+=.|
T Consensus 109 -~~~---~~-~~~~~~~~cDIliPaA~en~I~~~nA~~i~a~~ck~IvEgA 154 (254)
T cd05313 109 -AKY---FE-GKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGA 154 (254)
T ss_pred -CEE---CC-CCCHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf -566---38-97513304769974354667899999999967982998658
No 53
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.56 E-value=0.037 Score=34.61 Aligned_cols=92 Identities=25% Similarity=0.273 Sum_probs=59.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCCEEEEECC---CCCCCCCCCCCC
Q ss_conf 6189885668688999999996888872899960688-999999887514412556740898365---300165654211
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGEVKIIGD---TIDVGLGPIQVT 77 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~---~l~in~~~i~i~ 77 (333)
.+|||+-|-|..||.+.-|+.. -+++++|+|.|+. +....+| |-.++.-..-++..+- .=-+.-.+|.++
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~--m~Gm~vvaisd~~~~~ak~A~----~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT 90 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIAS--MPGMEVVAISDRNLDAAKRAY----DRAGGPKIEAVEADDASKMADAIEAGKIAVT 90 (438)
T ss_pred CEEEEEECCCCCCHHHHHHHHH--CCCCEEEEEECCCCHHHHHHH----HHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 5599875454110679998750--688369998424642788999----8735872000011116678899862867982
Q ss_pred CCCCCCCCC-CCCCCEEEEECCCCC
Q ss_conf 012333334-465632786066433
Q gi|254780654|r 78 SIRDPQDLP-WGDVDVAMECTGFFV 101 (333)
Q Consensus 78 ~~~~p~~i~-W~~vDiViEcTG~f~ 101 (333)
.|-+.|- -+.+|++||.||+-.
T Consensus 91 --~D~~~i~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 91 --DDAELIIANDLIDVIIDATGVPE 113 (438)
T ss_pred --CCHHHHHCCCCCEEEEECCCCCC
T ss_conf --65354323886049997678853
No 54
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.51 E-value=0.14 Score=30.77 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=15.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 898856686889999999968888728999606
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
++.|-|||-.|....+.+.+. +-.||++.|
T Consensus 231 ~v~IqGfGNVg~~aA~~l~e~---GakvVavSD 260 (446)
T PRK09414 231 TVVVSGSGNVAIYAIEKAMEL---GAKVVTCSD 260 (446)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCEEEEEEC
T ss_conf 799977777999999999976---997999983
No 55
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=95.49 E-value=0.24 Score=29.29 Aligned_cols=234 Identities=21% Similarity=0.266 Sum_probs=146.3
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEE-CCCC-CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 1898856-6868899999999688887289996-0688-99999988751441255674089836530016565421101
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAI-NDLN-SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaI-Nd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
+||||-| =|=.|--++|.+.. +|.+|++.+ .... +.- -+...+|-.+.+.+. +. .+..
T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~~--HP~~e~~~~~ss~~~~aG-----~~~~~~~P~L~g~~~---------~~---~~~~ 61 (361)
T TIGR01850 1 IKVGIVGASGYTGGELLRLLAN--HPEVEITYLVSSRESLAG-----KPLSEVHPHLRGLVD---------YL---NLEP 61 (361)
T ss_pred CEEEEEECCCHHHHHHHHHHHC--CCCEEEEEEEEEEEHHCC-----CCHHHHCCCHHHHHC---------CC---CCCC
T ss_conf 9689993344468999999841--995378888876201138-----525773661110100---------23---3366
Q ss_pred CCC---CCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE-EECCC--CCCC---------------EEEEEEC---C
Q ss_conf 233---333446563278606643332122001105842343-30367--8873---------------4898405---5
Q gi|254780654|r 80 RDP---QDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL-VSAPC--KGVK---------------KTIVYGV---N 135 (333)
Q Consensus 80 ~~p---~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI-iSaP~--kd~~---------------~tiV~Gv---N 135 (333)
.++ +++...++|+|+-||=.=.+++-+...|++|+| || +||=. +|.. ..-|||. |
T Consensus 62 ~~~~~~~~~~L~~~DvVFlAlPhgvs~~~~p~~l~~g~~-ViDLSADFRl~d~~~Ye~wYG~h~~~~ll~~avYGLpEl~ 140 (361)
T TIGR01850 62 LDDAKLEEIELEDADVVFLALPHGVSMELAPELLEAGVK-VIDLSADFRLKDPEVYEKWYGFHAAPELLQEAVYGLPELH 140 (361)
T ss_pred CCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCE-EEECCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCC
T ss_conf 676678886213767899868725569999999847986-9988834336997999996677889666631155676701
Q ss_pred --CCCCCCCCEEECCCCCCHHH----HHHHHHHHHHCCCHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCC--------
Q ss_conf --32122221033057641023----46688875412102322100113453222-3556654530001123--------
Q gi|254780654|r 136 --HQSLNKEDKVVSNASCTTNC----LVPVVHVLDKMFGIEKGYMTTVHSYTGDQ-HVLDAGHSDLYRSRAA-------- 200 (333)
Q Consensus 136 --~~~~~~~~~IiS~aSCTtn~----laPvlk~l~~~~gI~~g~~TTiH~~t~~Q-~l~D~~~~d~Rr~Raa-------- 200 (333)
-+++. +-+.|+|.-|=.+| |+|++|-- -| --+| .++|+.+.-.==||.+
T Consensus 141 ~~re~i~-~A~liAnPGCYpTA~~LaL~PL~~~~----l~-----------~~~~~~i~dakSGvSGAGr~as~~~~~~E 204 (361)
T TIGR01850 141 GAREEIK-GARLIANPGCYPTATLLALAPLLKEG----LI-----------DPTSEIIVDAKSGVSGAGRKASEKSHFPE 204 (361)
T ss_pred HHHHHHH-CCCEEECCCCHHHHHHHHHHHHHHHC----CC-----------CCCCCEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 0588984-29576448861789999989999831----56-----------76776589887445566777763357344
Q ss_pred -CCCCCCCCCH-HHHHHHHHHHHCC---C---CCEEEEEE---CCCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHCC-C
Q ss_conf -6564645311-2456777762017---8---71043431---233531011234332012-2067889999874100-0
Q gi|254780654|r 201 -AISMVPTSTG-AAKAVELVLPNLK---G---KLDGSSIR---VPTPNVSMVDLKCVTSRD-VNIDEINATMKYFAEG-D 267 (333)
Q Consensus 201 -~~niIPt~Tg-aa~ai~~vlP~l~---g---kl~g~a~R---VPt~~vS~vDlt~~l~k~-~t~e~in~~~~~as~~-~ 267 (333)
..||.|..-. .=+=+..+.=+|. + +.. .+|- ||..-|-+.-..+.+++. .+.++|.++++++=++ +
T Consensus 205 ~~en~~pY~~~G~HRH~PEI~q~L~~~~~~~~~~~-v~FTPHL~P~~RGIl~T~~~~l~~~~~~~~~~~~~Y~~~Y~~ep 283 (361)
T TIGR01850 205 VNENLRPYKVTGGHRHTPEIEQELGKLAGGIDKVK-VSFTPHLVPMTRGILATIYAKLKDGSLTEEDLRKLYEEFYADEP 283 (361)
T ss_pred HHCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEE-EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 32770620379985027999998767630448727-99986312623532012768726899888999999999712797
Q ss_pred CCCEEE
Q ss_conf 048574
Q gi|254780654|r 268 LKNILG 273 (333)
Q Consensus 268 ~~~il~ 273 (333)
+-.|+.
T Consensus 284 FVrv~~ 289 (361)
T TIGR01850 284 FVRVLP 289 (361)
T ss_pred EEEEEC
T ss_conf 179822
No 56
>PRK06813 homoserine dehydrogenase; Validated
Probab=95.09 E-value=0.032 Score=35.02 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=30.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCC-------CCCEEEEEECCC
Q ss_conf 9618988566868899999999688-------887289996068
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESR-------RDDVRIVAINDL 37 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~-------~~~i~ivaINd~ 37 (333)
|.|+|+|-|||-+|+.+++++.+++ .-+++|++|-+.
T Consensus 1 m~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s 44 (341)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (341)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 96029999538899999999999999999974997799999968
No 57
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.04 E-value=0.19 Score=29.97 Aligned_cols=140 Identities=19% Similarity=0.144 Sum_probs=79.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 89885668688999999996888872899960688999999887514412556740898365300165654211012333
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQ 83 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~ 83 (333)
++.|.|-|-||-+...++... +..-|.+-|.. .+.+....+ +.++..+..+. .... ..
T Consensus 123 ~V~V~G~G~iGl~~~~~a~~~---Ga~~Vi~~d~~-~~rl~~a~~-------~Ga~~~i~~~~------~~~~-----~~ 180 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAA---GAARVVAADPS-PDRRELALS-------FGATALAEPEV------LAER-----QG 180 (280)
T ss_pred EEEEEECCHHHHHHHHHHHHC---CCCEEEEEECC-HHHHHHHHH-------CCCCEEECCCC------HHHH-----HH
T ss_conf 899990786899999999984---99879999199-899999997-------39989837757------7999-----99
Q ss_pred CCCCC-CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 33446-56327860664333212200110584234330367887348984055321222210330576410234668887
Q gi|254780654|r 84 DLPWG-DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHV 162 (333)
Q Consensus 84 ~i~W~-~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laPvlk~ 162 (333)
++..+ ++|+||||+|.-.+-+.+-..++.|-+-|++..+..+....+- .+ +-+.++.+|+..-+.+.......++.
T Consensus 181 ~~~~g~g~D~vie~~G~~~~~~~a~~~l~~gG~iv~vG~~~~~~~~~~~--~~-~l~~ke~~i~Gs~~~~~~~~~~ai~l 257 (280)
T TIGR03366 181 GLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALD--PE-QVVRRWLTIRGVHNYEPRHLDQAVRF 257 (280)
T ss_pred HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEC--HH-HHHHCCEEEEEEECCCHHHHHHHHHH
T ss_conf 9727888709998789889999999986049899998046899841478--99-99869879999606898999999999
Q ss_pred HHHCCC
Q ss_conf 541210
Q gi|254780654|r 163 LDKMFG 168 (333)
Q Consensus 163 l~~~~g 168 (333)
|.++-+
T Consensus 258 l~~~~~ 263 (280)
T TIGR03366 258 LAANGQ 263 (280)
T ss_pred HHHCCC
T ss_conf 997699
No 58
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.91 E-value=0.074 Score=32.63 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=9.9
Q ss_pred CCEEEEEECCCHHHHHHHHH
Q ss_conf 96189885668688999999
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRA 20 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~ 20 (333)
|.-||-|.+ +|-...+..
T Consensus 1 Mk~Kvlvt~--~i~~~~~~~ 18 (333)
T PRK13243 1 MKPRVFITR--EIPENGIEM 18 (333)
T ss_pred CCCEEEEEC--CCCHHHHHH
T ss_conf 997899969--889999999
No 59
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.86 E-value=0.26 Score=29.05 Aligned_cols=98 Identities=24% Similarity=0.244 Sum_probs=63.8
Q ss_pred CCEEEEEECCCHHHHH-HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9618988566868899-999999688887289996068899999988751441255674089836530016565421101
Q gi|254780654|r 1 MVCKVAINGFGRIGRC-ILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGfGRIGR~-v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|++||||-|.|.|+.. .++.+.+.++. ++++++-|+. .+....+-+ +|..+ .. .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~~-~~~a~~~a~------~~~~~---------------~~--~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDRD-PERAEAFAE------EFGIA---------------KA--Y 56 (342)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCC-EEEEEEECCC-HHHHHHHHH------HCCCC---------------CC--C
T ss_conf 9327999898767888889999738874-6999996499-899999999------81997---------------45--2
Q ss_pred CCCCC-CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 23333-3446563278606643332122001105842343303678
Q gi|254780654|r 80 RDPQD-LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK 124 (333)
Q Consensus 80 ~~p~~-i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k 124 (333)
.+.++ +...++|+|+=||--..-.+-+.+-|++| |-|++=-|..
T Consensus 57 ~~~~~ll~~~~iD~V~Iatp~~~H~~~a~~AL~aG-khVl~EKPla 101 (342)
T COG0673 57 TDLEELLADPDIDAVYIATPNALHAELALAALEAG-KHVLCEKPLA 101 (342)
T ss_pred CCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 99999945999988999698067799999999779-9699928998
No 60
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.61 E-value=0.2 Score=29.83 Aligned_cols=126 Identities=23% Similarity=0.250 Sum_probs=70.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH--HCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875--14412556740898365300165654211012
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLR--YDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~--yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|++.|.|.||+|+.+.|.+.+. +-+++.|-+ |.+.+...+. +|. . -+..++. .++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~--d~~~~~~~~~~~~~~-------~------~v~gd~t-----~~~ 57 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE---GHNVVLIDR--DEERVEEFLADELDT-------H------VVIGDAT-----DED 57 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEEC--CHHHHHHHHHHCCCE-------E------EEEECCC-----CHH
T ss_conf 9899989857889999999878---990899976--889999863200044-------9------9992688-----989
Q ss_pred CCCCCCCCCCCEEEEECCCCCC-CCCCCHHHH-CCCCEEEEECCCCCCC-EEEEEECCCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 3333344656327860664333-212200110-5842343303678873-489840553212222103305764102346
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVT-QEKASLHLS-NGSQRVLVSAPCKGVK-KTIVYGVNHQSLNKEDKVVSNASCTTNCLV 157 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~-~~~~~~HL~-~GakkVIiSaP~kd~~-~tiV~GvN~~~~~~~~~IiS~aSCTtn~la 157 (333)
-..+..-.+.|+++=+||.-.. .--+...++ -|+++|+.-+..++.. ..--+| -+.+||---+.+.-++
T Consensus 58 ~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g--------~~~ii~Pe~~~~~~l~ 129 (225)
T COG0569 58 VLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLG--------ADVIISPEKLAAKRLA 129 (225)
T ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC--------CCEEECHHHHHHHHHH
T ss_conf 99867986389999980886799999999998739984999956941677898679--------9489755899999999
Q ss_pred HH
Q ss_conf 68
Q gi|254780654|r 158 PV 159 (333)
Q Consensus 158 Pv 159 (333)
..
T Consensus 130 ~~ 131 (225)
T COG0569 130 RL 131 (225)
T ss_pred HH
T ss_conf 98
No 61
>pfam02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerization domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=94.59 E-value=0.047 Score=33.92 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=65.6
Q ss_pred HHHHHHCC-CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHH---HHHHHH---------HCCCC
Q ss_conf 88754121-02322100113453222355665453000112365646453112-456---777762---------01787
Q gi|254780654|r 160 VHVLDKMF-GIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGA-AKA---VELVLP---------NLKGK 225 (333)
Q Consensus 160 lk~l~~~~-gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tga-a~a---i~~vlP---------~l~gk 225 (333)
||.|+++| +|++-.++|..+....=+-. +.---......|++|...+- -+- +.+.|- .+..+
T Consensus 1 L~PL~~~~~~i~~Iiv~t~qgvSGAG~~~----~~~~~~~~i~~N~~py~~~~~h~h~~Ei~eel~~~~e~~~~l~~~~~ 76 (167)
T pfam02774 1 LKPLRDALGGLERVIVDTYQAVSGAGKKA----KPGVFGAPIADNLIPYIDGEEHNGTPETREELKMVNETKKILGFTPK 76 (167)
T ss_pred CCCHHHHHCCCCEEEEEECCCCCCCCCCC----CCCCCCHHHHCCEEEECCCHHHCCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 92044644899799999211025067887----86786534328889425740304830688887774178367438986
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCCHHHHHHHHHH
Q ss_conf 10434312335310112343320-12206788999987
Q gi|254780654|r 226 LDGSSIRVPTPNVSMVDLKCVTS-RDVNIDEINATMKY 262 (333)
Q Consensus 226 l~g~a~RVPt~~vS~vDlt~~l~-k~~t~e~in~~~~~ 262 (333)
+.+...|||+..|-+.-+.++++ ++...+++-+.|..
T Consensus 77 v~~T~~rVPv~rGh~~ti~v~~~~~~~~~~~~~~~~~~ 114 (167)
T pfam02774 77 VSATCVRVPVFRGHSETVTVKLKLKPIDVEEVYEAFYA 114 (167)
T ss_pred CCCEEEECCEEEEEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 33258981408468999999954881659999999973
No 62
>PRK07574 formate dehydrogenase; Provisional
Probab=94.48 E-value=0.062 Score=33.17 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=8.3
Q ss_pred HCCCCCEEEEEECCCC
Q ss_conf 0178710434312335
Q gi|254780654|r 221 NLKGKLDGSSIRVPTP 236 (333)
Q Consensus 221 ~l~gkl~g~a~RVPt~ 236 (333)
+|-.+-+=.++.+|-.
T Consensus 244 eLl~~sDvVslh~PLt 259 (385)
T PRK07574 244 SLVSVCDVVTIHCPLH 259 (385)
T ss_pred HHHHHCCEEEECCCCC
T ss_conf 9986289699866798
No 63
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.23 E-value=0.21 Score=29.68 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 961898856686889999999968888728999606889999998875
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
||+|||+-|.|.+|..+++-+++...+..+|...+ + +.+.+.+|-+
T Consensus 1 mm~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~-r-~~~~~~~l~~ 46 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD-P-SPEKRAALAE 46 (267)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEC-C-CHHHHHHHHH
T ss_conf 99879998668999999999997798945289977-9-9999999999
No 64
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.96 E-value=0.38 Score=27.97 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=55.3
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|+|-+-| -|.+||.+.|.+++. +.+|.+.-- +++....|- .+. ++ +..-.-.+
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~---G~~Vr~lvR--np~ka~~l~-------~~G--ve------------~v~gDl~d 54 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDE---GYQVKCLVR--NLRKAAFLK-------EWG--AE------------LVYGDLSL 54 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC---CCCEEEEEC--CHHHHHHHH-------HCC--CE------------EEEECCCC
T ss_conf 97999899858999999999968---890899957--867632342-------159--67------------99942788
Q ss_pred CCCCC--CCCCCEEEEECCCCCCCCC-C------------CHHHHCCCCEEEE-ECCCCCC
Q ss_conf 33334--4656327860664333212-2------------0011058423433-0367887
Q gi|254780654|r 82 PQDLP--WGDVDVAMECTGFFVTQEK-A------------SLHLSNGSQRVLV-SAPCKGV 126 (333)
Q Consensus 82 p~~i~--W~~vDiViEcTG~f~~~~~-~------------~~HL~~GakkVIi-SaP~kd~ 126 (333)
|+.++ ..++|.|+.+++...+... . +.--++|+||+|. |+-..+.
T Consensus 55 pesl~~Al~GvdaVi~~~~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~~ 115 (319)
T CHL00194 55 PETIPPALEGITAIIDASTSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAEQ 115 (319)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 7789999659967999456677886208898898899999999984998899961356666
No 65
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=93.90 E-value=0.079 Score=32.47 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=23.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 189885668688999999996888872899960
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIN 35 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN 35 (333)
.+|||-|||||||.+.+.+-. .+.+|.+.+
T Consensus 37 k~vgIiG~G~IG~~va~~l~~---fg~~V~~~d 66 (176)
T pfam02826 37 KTVGIIGLGRIGRAVARRLKA---FGMKVIAYD 66 (176)
T ss_pred CEEEEECCCHHHHHHHHHHHH---HCCCEEEEC
T ss_conf 999998969999999999998---398125437
No 66
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.82 E-value=0.53 Score=27.08 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=49.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---------CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688---------99999988751441255674089836530016565
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN---------SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP 73 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~---------~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~ 73 (333)
.+|+|-|||-+|+.+.|.+.+. +..+|+|.|.. +.+.+.|..+..+.-+..
T Consensus 24 ~~vaVqGfGnVG~~~a~~l~~~---GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~----------------- 83 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVK----------------- 83 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCC-----------------
T ss_conf 9999989889999999999985---99899998578717789998699999999818965366-----------------
Q ss_pred CCCCCCCCCCCCCCC-CCCEEEEEC-CCCCCCCCCCH
Q ss_conf 421101233333446-563278606-64333212200
Q gi|254780654|r 74 IQVTSIRDPQDLPWG-DVDVAMECT-GFFVTQEKASL 108 (333)
Q Consensus 74 i~i~~~~~p~~i~W~-~vDiViEcT-G~f~~~~~~~~ 108 (333)
..+.-+.+-.|. ++||++-|. +---+.+.+..
T Consensus 84 ---~~~~~~~~~~~~~~~DIliPaAl~~~I~~~~a~~ 117 (217)
T cd05211 84 ---VQDYFPGEAILGLDVDIFAPCALGNVIDLENAKK 117 (217)
T ss_pred ---CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf ---6530598650036776896424458879899987
No 67
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.64 E-value=0.11 Score=31.54 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=39.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 618988566868899999999688887289996068899999988751441
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSV 52 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~ 52 (333)
|.||...+--+.-+-.+..+.+. .++++...-+..+.+++...=.||.+
T Consensus 1 m~Ki~~~~~~~~e~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~d~v 49 (330)
T PRK12480 1 MTKIMFFGTRDYEKEMALNWGKK--NNVEVTTSKELLSSATVDQLKDYDGV 49 (330)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH--CCEEEEEECCCCCHHHHHHHCCCCEE
T ss_conf 96699983768669999998877--49069995698998999984799989
No 68
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.61 E-value=0.19 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 18988566868899999999688887289996
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 34 (333)
-++||-|||||||.+.|.+.. .+.+|.+-
T Consensus 139 ktlGIiG~G~IG~~vA~~~~~---fgm~Vi~y 167 (524)
T PRK13581 139 KTLGVIGLGRIGSEVAKRAKA---FGMKVIAY 167 (524)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 889997767578999999985---49747887
No 69
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.50 E-value=0.13 Score=30.98 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=23.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 189885668688999999996888872899960
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIN 35 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN 35 (333)
.++||-|||||||.+.|.+-. .+.+|.+.+
T Consensus 123 ktvGIiG~G~IG~~vA~~~~a---fg~~V~~~~ 152 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKA---FGMNIYAYT 152 (303)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEEEC
T ss_conf 889998976569999999997---798899989
No 70
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.47 E-value=0.13 Score=30.95 Aligned_cols=12 Identities=17% Similarity=0.492 Sum_probs=6.9
Q ss_pred CCEEEEEECCCC
Q ss_conf 710434312335
Q gi|254780654|r 225 KLDGSSIRVPTP 236 (333)
Q Consensus 225 kl~g~a~RVPt~ 236 (333)
+-+=.++.+|-.
T Consensus 197 ~sDivslh~Plt 208 (317)
T PRK06487 197 QVDALTLHCPLT 208 (317)
T ss_pred HCCEEEEECCCC
T ss_conf 388568733576
No 71
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=93.34 E-value=0.13 Score=31.04 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=32.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCH
Q ss_conf 9618988566868899999999688887289996068899
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSI 40 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~ 40 (333)
|.+++-|.|||-+|+..+|.+++. +++++|+.-+.++.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv~s~a 38 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWVHSAA 38 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC--CCCCEEEEEECCCC
T ss_conf 973058962555779999999708--89716899951740
No 72
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=93.23 E-value=0.27 Score=28.97 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=57.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98856686889999999968888728999606889999998875144125567408983653001656542110123333
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQD 84 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~~ 84 (333)
|.|-|+|++||.+.+.+.++... .+|+. -|. +.+.+..+.. ... ...++.. .+-+ .|+++
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~-~~i~v-ad~-~~~~~~~~~~--~~~---~~~~~~~---------~~d~---~~~~~ 60 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDV-DEITV-ADR-SLEKAQALAA--PKL---GLRFIAI---------AVDA---DNYEA 60 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC-CEEEE-EEC-CHHHHHHHHH--HCC---CCCEEEE---------EECC---CCHHH
T ss_conf 98989778799999999728998-86999-989-8899898775--236---9853899---------9577---89999
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 34--465632786066433321220011058423433036
Q gi|254780654|r 85 LP--WGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 85 i~--W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP 122 (333)
+. -++.|+||.|.+-|....-++.-+++|+..|=+|-.
T Consensus 61 l~~~~~~~diVv~~~p~~~~~~i~~~c~~~g~~yvd~s~~ 100 (384)
T pfam03435 61 LAALLKEGDLVINLAPPFLSLTVLKACIETGVHYVDTSYL 100 (384)
T ss_pred HHHHHHCCCEEEECCCHHHCHHHHHHHHHCCCCEEECCCC
T ss_conf 9998712899999984341699999999739975753436
No 73
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.09 E-value=0.52 Score=27.12 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---CHHHHHHHHH
Q ss_conf 189885668688999999996888872899960688---9999998875
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN---SIETMAHLLR 48 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~---~~~~~~~Ll~ 48 (333)
-||.|-|+|+.|+.+.|.+.+. +.+|. +.|-. +......|.+
T Consensus 10 k~i~viGlG~sG~s~a~~L~~~---G~~V~-~~D~~~~~~~~~~~~l~~ 54 (450)
T PRK02472 10 KKVLVLGLAKSGYAAAKLLHKL---GANVT-VNDGKPFSENPAAQELLE 54 (450)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEE-EEECCCCCCCHHHHHHHH
T ss_conf 9899997789999999999988---69899-984886657989999996
No 74
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=93.05 E-value=0.23 Score=29.37 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=63.6
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEEC--CCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 898856-68688999999996888872899960--688999999887514412556740898365300165654211012
Q gi|254780654|r 4 KVAING-FGRIGRCILRAAVESRRDDVRIVAIN--DLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 4 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaIN--d~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
||||-| -|-.|+-++|.+.+. +++++..+- ...--+.+. ..|..+. +......
T Consensus 1 kVaIvGatGyvG~eli~lL~~h--p~~~~~~l~as~~~~G~~i~------~~~~~l~-------------~~~~~~~--- 56 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVS------EAGPHLK-------------GEVVLEL--- 56 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCHH------HHCCCCC-------------CCCCCEE---
T ss_conf 9899894519999999999858--99745777740465897578------8596645-------------7735056---
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCC---CHHHHCCCCEEE-EECCC--CCCCEEEEEECCCCCC
Q ss_conf 33333446563278606643332122---001105842343-30367--8873489840553212
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKA---SLHLSNGSQRVL-VSAPC--KGVKKTIVYGVNHQSL 139 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~---~~HL~~GakkVI-iSaP~--kd~~~tiV~GvN~~~~ 139 (333)
++.+..+.++|+|+-|++.-.+++-+ ...+++|+ +|| +|+-. ++..+.++..+|-+.+
T Consensus 57 ~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~~~~~g~-~VIDlSadfRl~~~~~~~lPEvN~~~i 120 (122)
T smart00859 57 EPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV-KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCC-EEEECCHHHCCCCCCCEECCCCCHHHH
T ss_conf 5331100179999993882788999998898875698-798684775278998669987198895
No 75
>KOG2741 consensus
Probab=92.96 E-value=0.18 Score=30.19 Aligned_cols=214 Identities=21% Similarity=0.161 Sum_probs=105.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
+.+|+||-|-|||+|-+.|.+-..+..+.+||||-|+ +.+.....-+. | .++ . .+.+.
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~---~-~~~-~--------------~k~y~-- 62 (351)
T KOG2741 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQR---H-NIP-N--------------PKAYG-- 62 (351)
T ss_pred CEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECC-CHHHHHHHHHH---C-CCC-C--------------CCCCC--
T ss_conf 6058988604677899999721475458279999655-27889999986---5-999-8--------------74255--
Q ss_pred CCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC-CCC--EEEEEECCCCCCCCCCEEECCCCCCHHHH
Q ss_conf 3333344-6563278606643332122001105842343303678-873--48984055321222210330576410234
Q gi|254780654|r 81 DPQDLPW-GDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK-GVK--KTIVYGVNHQSLNKEDKVVSNASCTTNCL 156 (333)
Q Consensus 81 ~p~~i~W-~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k-d~~--~tiV~GvN~~~~~~~~~IiS~aSCTtn~l 156 (333)
.-+++-= .+||+|.=+|=.-.-.|-+..-|..| |.|++--|.. +.+ .-+|--.-....---.-+.+-=++
T Consensus 63 syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P----- 136 (351)
T KOG2741 63 SYEELAKDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFP----- 136 (351)
T ss_pred CHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCC-CCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCC-----
T ss_conf 7998824987687996799800899999999759-9578656553889999999999997694887644421073-----
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCC----CCCCCCCCCCCHHHHHH--HHHHHH---CCCC
Q ss_conf 66888754121023221001134532223556--6545300011----23656464531124567--777620---1787
Q gi|254780654|r 157 VPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLD--AGHSDLYRSR----AAAISMVPTSTGAAKAV--ELVLPN---LKGK 225 (333)
Q Consensus 157 aPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D--~~~~d~Rr~R----aa~~niIPt~Tgaa~ai--~~vlP~---l~gk 225 (333)
+..|+-+--++=.-|.+..|+. +-.++..+ .||+..-+-| ++..-|-=..++++..+ ...-|+ +.|.
T Consensus 137 -~~~~lke~l~~~~~Gdvk~v~~-~~~f~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i~~~~~~~~f~~~p~~~~~~g~ 214 (351)
T KOG2741 137 -RYAKLKELLSSGVLGDVKSVEV-EFGFPFPEDELPHKSRLRTGLLGGGALGDLGIYPIQAALWVNNFQEPPEVIAVDGR 214 (351)
T ss_pred -HHHHHHHHHHCCCCCCCEEEEE-ECCCCCCHHHCCCCCCHHEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf -8999999971265556248999-64777511211343210000026752006489888889999980699604404763
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 10434312335310112343
Q gi|254780654|r 226 LDGSSIRVPTPNVSMVDLKC 245 (333)
Q Consensus 226 l~g~a~RVPt~~vS~vDlt~ 245 (333)
. +.+.+|+....-+.|.+-
T Consensus 215 v-~n~~~v~~s~~~~l~f~~ 233 (351)
T KOG2741 215 V-LNSEGVDDSVGAILDFTG 233 (351)
T ss_pred C-CCCCCCCCCCCEEEEECC
T ss_conf 0-267884323545999679
No 76
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.81 E-value=0.73 Score=26.14 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 18988566868899999999688887289996
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 34 (333)
-||+|-|+|+=|+.+.|.+.+. +.+|...
T Consensus 15 kkv~i~GlG~sG~a~a~~L~~~---g~~v~~~ 43 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL---GAKVTAF 43 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEEEE
T ss_conf 9699997878899999999978---8979999
No 77
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.75 E-value=0.22 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=13.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 8988566868899999999688887289996
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 34 (333)
++||-|+||||+.+.|.+- ..+.+|.+-
T Consensus 148 tvGIiG~GrIG~avA~r~~---~Fgm~v~y~ 175 (324)
T COG1052 148 TLGIIGLGRIGQAVARRLK---GFGMKVLYY 175 (324)
T ss_pred EEEEECCCHHHHHHHHHHH---CCCCEEEEE
T ss_conf 8899784889999999872---179689986
No 78
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.63 E-value=0.18 Score=30.14 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=21.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1898856686889999999968888728999
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVA 33 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~iva 33 (333)
-++||-|||||||.+.+.+.. .+.+|.+
T Consensus 152 KtlGIIG~G~IG~~VA~~a~~---fGm~Vi~ 179 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAES---LGMRVIF 179 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEE
T ss_conf 789863675476999999987---6998999
No 79
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.54 E-value=0.13 Score=30.99 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCHHHHH-HHH--HHHHCCCCCEEEEEECCCCC
Q ss_conf 00112365646453112456-777--76201787104343123353
Q gi|254780654|r 195 YRSRAAAISMVPTSTGAAKA-VEL--VLPNLKGKLDGSSIRVPTPN 237 (333)
Q Consensus 195 Rr~Raa~~niIPt~Tgaa~a-i~~--vlP~l~gkl~g~a~RVPt~~ 237 (333)
++.++-+.+++-.....+.. -.. =+.+|-.+-+=.++.+|-..
T Consensus 164 ~~~~~fGm~V~~~~~~~~~~~~~~~~~l~ell~~sDiIslh~Plt~ 209 (314)
T PRK06932 164 RLATALGMKVLYAEHKGATECREGYTPFEEVLKQADIVTLHCPLTE 209 (314)
T ss_pred HHHHCCCCEEEEECCCCCHHHCCCCCCHHHHHHCCCEEEEEECCCC
T ss_conf 9985289889997876612323465759999623583689511301
No 80
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.24 E-value=0.26 Score=29.06 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1898856686889999999968888728999606
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
.++||-|||+|||.+.+.+-. .+++|.+.+-
T Consensus 143 kTvGIiG~G~IG~~va~~l~a---fgm~v~~~d~ 173 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKA---FGMKVIGYDP 173 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEEECC
T ss_conf 889998987899999999986---7986999889
No 81
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.02 E-value=0.27 Score=28.97 Aligned_cols=48 Identities=10% Similarity=0.150 Sum_probs=36.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 61898856686889999999968888728999606889999998875144
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS 51 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS 51 (333)
||||.+.|.----+..|+.+.+. .++++....+..+.+.+.-.=.||-
T Consensus 1 m~Ki~~~~~~~~e~~~~~~~~~~--~~~ev~~~~~~~~ee~i~~~~~~D~ 48 (332)
T PRK08605 1 MTKIKLMSVRDEDAPYIKAWAEK--HHVEVDLTKEALTDDNVEEVEGFDG 48 (332)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHCCCCE
T ss_conf 97699982766569999998886--5907999669999899998579988
No 82
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.83 E-value=1.1 Score=25.00 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=25.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHH
Q ss_conf 189885668688999999996888872899960688-99999988
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHL 46 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~L 46 (333)
-||.|-|+|+.|+.++|.+.+. +.+|. +.|.. ..+.+..+
T Consensus 6 k~v~viGlG~sG~s~a~~L~~~---G~~v~-~~D~~~~~~~~~~~ 46 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN---GAEVA-AYDAELKAERVAQI 46 (445)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEE-EEECCCCCCHHHHH
T ss_conf 9899999899999999999978---99199-99799995318999
No 83
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.53 E-value=0.12 Score=31.28 Aligned_cols=115 Identities=11% Similarity=0.123 Sum_probs=64.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH-CCCCCCCCCEEEEECCCC-CCC-CCCCCCCCCC
Q ss_conf 8988566868899999999688887289996068899999988751-441255674089836530-016-5654211012
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY-DSVHGRFPGEVKIIGDTI-DVG-LGPIQVTSIR 80 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y-DS~hG~~~~~v~~~~~~l-~in-~~~i~i~~~~ 80 (333)
||.|-|.|.+|-.+++.+....-..+.++- +|.-+..++..-+-| .+--|+.+.++ ..+.| .+| +-++..+.+.
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD-~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~--a~~~l~~~np~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLID-FDTVELSNLNRQFLARQADIGKPKAEV--AARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCHHHHCCHHHHH--HHHHHHHHCCCCEEEEEECC
T ss_conf 999999798999999999993797199997-898750014642258988949224899--99999856898389999456
Q ss_pred C-CCC--CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEC
Q ss_conf 3-333--3446563278606643332122001105842343303
Q gi|254780654|r 81 D-PQD--LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 (333)
Q Consensus 81 ~-p~~--i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSa 121 (333)
- .+. --|+++|+||+|+..+.++..+......--+.+|.++
T Consensus 78 ~~~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~ 121 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred CCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89646999975999999877999999999999998699889963
No 84
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.34 E-value=0.74 Score=26.12 Aligned_cols=16 Identities=13% Similarity=0.536 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 2067889999874100
Q gi|254780654|r 251 VNIDEINATMKYFAEG 266 (333)
Q Consensus 251 ~t~e~in~~~~~as~~ 266 (333)
...|+++++|+...++
T Consensus 334 ~~Le~~~eAfe~~~~g 349 (358)
T TIGR03451 334 IGLDDVEEAFDKMHAG 349 (358)
T ss_pred EEHHHHHHHHHHHHCC
T ss_conf 8799999999998779
No 85
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.78 E-value=0.5 Score=27.23 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=27.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 189885668688999999996888872899960688999999887
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLL 47 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll 47 (333)
|||-|-|-||+|+.+.|.+.+.. -+|+.|-. |.+.+..+-
T Consensus 1 M~IiI~GaG~vG~~La~~Ls~e~---~dV~vID~--d~~~~~~~~ 40 (455)
T PRK09496 1 MKIIILGAGQVGGTLAERLVGEN---NDVTVIDT--DEERLRRLQ 40 (455)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCEEEEEC--CHHHHHHHH
T ss_conf 97999998889999999998689---97999989--999999988
No 86
>PRK08507 prephenate dehydrogenase; Validated
Probab=90.69 E-value=1.5 Score=24.12 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=32.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 18988566868899999999688887289996068899999988751
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY 49 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y 49 (333)
|||+|-|+|-||-.+.+++-+. ....+|.++.- +.+++.+-++.
T Consensus 1 M~I~IiGlGLiGgSla~alk~~-~~~~~V~g~d~--~~~~~~~A~~~ 44 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEN-KLISCVYGYDH--NEEHEKDALDL 44 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHC-CCCCEEEEEEC--CHHHHHHHHHC
T ss_conf 9899990087899999999950-99867999959--99999999986
No 87
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.67 E-value=0.17 Score=30.30 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=68.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|.++.|-|-|++||.++-.-+.. +.+++++++=|..+- .-|+.-+++.+ ..-.+
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv~~~-----------~VG~~~~~v~V--------------~~~d~ 137 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDVDPD-----------KVGTKIGDVPV--------------YDLDD 137 (211)
T ss_pred CEEEEEECCCHHHHHHHCCCCHH-HCCCEEEEEECCCHH-----------HHCCCCCCEEE--------------ECHHH
T ss_conf 03489990570888986074233-269359999617878-----------83752488145--------------52688
Q ss_pred CCC-CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCE
Q ss_conf 333-34465632786066433321220011058423433036788734
Q gi|254780654|r 82 PQD-LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKK 128 (333)
Q Consensus 82 p~~-i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~ 128 (333)
.++ +.-.++|+.|-|.-.-...+-+....++|+|.++--+|..=..|
T Consensus 138 le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 138 LEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEECCC
T ss_conf 888988617618999734898999999999838735884263575189
No 88
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.45 E-value=1.2 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=23.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 189885668688999999996888872899960688
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~ 38 (333)
-||+|-|+|+=|+.+.|.+... ..++...|..
T Consensus 7 K~v~V~GlG~sG~a~~~~L~~~----~~~~~~dd~~ 38 (450)
T PRK01368 7 QKIGVFGLGKTGISVYEELQNK----YDLIVYDDLK 38 (450)
T ss_pred CEEEEEEECHHHHHHHHHHHHC----CCEEEEECCC
T ss_conf 9089995878799999999719----9989998996
No 89
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.37 E-value=0.67 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHC
Q ss_conf 1898856686889999999968
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVES 24 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~ 24 (333)
|||+|-|+||-|+.+.|.+...
T Consensus 1 mKi~V~GlG~sG~s~a~~L~~~ 22 (401)
T PRK03815 1 MKISLFGYGKTTKALARFFVKN 22 (401)
T ss_pred CEEEEEEECHHHHHHHHHHHHC
T ss_conf 9399984777189999999948
No 90
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=1.7 Score=23.80 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=23.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1898856686889999999968888728999606
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
-||+|-|+|+=|+.+.|.+.+. +.++. +.|
T Consensus 13 k~V~V~GlG~sG~a~a~~L~~~---G~~v~-~~D 42 (487)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF---GARPT-VCD 42 (487)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEE-EEE
T ss_conf 9899991568389999999978---69799-998
No 91
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=89.93 E-value=1.7 Score=23.70 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=27.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 18988566868899999999688887289996068
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
.+++|-|||-+|+.+.+.+.+. +..||++.|.
T Consensus 33 ~~v~IqGfGnVG~~~a~~l~~~---GakvvavsD~ 64 (237)
T pfam00208 33 KTVAVQGFGNVGSYAAEKLLEL---GAKVVAVSDS 64 (237)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
T ss_conf 9999989889999999999987---9969999828
No 92
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.75 E-value=1.3 Score=24.46 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=24.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1898856686889999999968888728999606
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
.||+|-|+|+-|+.+.|.+.+. +.++....|
T Consensus 15 k~v~V~GlG~sG~s~a~~L~~~---G~~v~~~D~ 45 (481)
T PRK01438 15 LRVVVAGLGVSGFPAADALHEL---GASVTVVAD 45 (481)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEEEEEC
T ss_conf 9899995758899999999967---998999979
No 93
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.56 E-value=0.5 Score=27.25 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=69.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCC-CCCC-CCCCCCCCC-
Q ss_conf 8988566868899999999688887289996068899999988751441255674089836530-0165-654211012-
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTI-DVGL-GPIQVTSIR- 80 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l-~in~-~~i~i~~~~- 80 (333)
||.|-|.|-+|-.+...+...---.+.++- .|.-++.++..-+-+.+--|+.+.+ .-...| .+|- -+|..+.++
T Consensus 1 kV~IvG~GGLG~~~a~~La~aGvg~i~lvD-~D~Ve~SNL~RQ~~~~~diG~~Ka~--~a~~~l~~iNp~i~i~~~~~~l 77 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVD-FDVVEPSNLNRQQYFLSQIGEPKVE--ALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCHHCCHHHHHHCCCHHHH--HHHHHHHHHCCCCEEEEEECCC
T ss_conf 989987678899999999981897399998-9946664430132477747974999--9999999879798899991444
Q ss_pred CCCCCC--CCCCCEEEEECCCCCCCCCCCH-HHHCCCCEEEEECCC---CCCCEEEEEECCCCCCCCCCEEECCCCCCHH
Q ss_conf 333334--4656327860664333212200-110584234330367---8873489840553212222103305764102
Q gi|254780654|r 81 DPQDLP--WGDVDVAMECTGFFVTQEKASL-HLSNGSQRVLVSAPC---KGVKKTIVYGVNHQSLNKEDKVVSNASCTTN 154 (333)
Q Consensus 81 ~p~~i~--W~~vDiViEcTG~f~~~~~~~~-HL~~GakkVIiSaP~---kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn 154 (333)
++++++ .+++|+|+|||--|.+|-.+.. .... ..+-++++.. ...-.++...--...+... .--.+.+|.+.
T Consensus 78 ~~~n~~~l~~~~D~ViD~~Dn~~tr~~l~~~~~~~-~~~plv~as~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 155 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGN-KNKPVVCASGMAGFGDSNNIKTKKISDNFYIC-GDLVNEAKEGL 155 (174)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCEEEECCCCCCCEEEC-CCCCCCCCCCC
T ss_conf 99999999837999999999989999999999998-79959999745108660577369999876356-89766666678
Q ss_pred -HHHHHHHHH
Q ss_conf -346688875
Q gi|254780654|r 155 -CLVPVVHVL 163 (333)
Q Consensus 155 -~laPvlk~l 163 (333)
-|+|++-++
T Consensus 156 GVlgP~Vgii 165 (174)
T cd01487 156 GLMAPRVNIC 165 (174)
T ss_pred CCHHHHHHHH
T ss_conf 8636799999
No 94
>KOG0069 consensus
Probab=89.53 E-value=0.29 Score=28.74 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=15.6
Q ss_pred EEEEEECCCHHHHHHHHHHHH
Q ss_conf 189885668688999999996
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVE 23 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~ 23 (333)
-+|||-||||||+.+.+.+-.
T Consensus 163 K~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069 163 KTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred CEEEEECCCHHHHHHHHHHHH
T ss_conf 779996274788999996353
No 95
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=89.48 E-value=1.9 Score=23.48 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=28.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 18988566868899999999688887289996068
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
.++.|-|||-+|+.+.|.+.+. +-.+++|.|.
T Consensus 32 ~~v~IqG~GnVG~~~a~~L~~~---Gakvv~vsD~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
T ss_conf 9999989889999999999987---9959999847
No 96
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.35 E-value=1.9 Score=23.42 Aligned_cols=87 Identities=15% Similarity=0.318 Sum_probs=47.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|-||.|-|+|+=|+.+.|.++... .++.+....+...++....+ . ..+. +.. .
T Consensus 7 ~KkvlV~GlG~sG~s~a~~L~~~~-~~~~v~~~D~~~~~~~~~~l-~---------~~~~--------------~~~--g 59 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKTQ-PQLTVKVIDTRETPPGQEQL-P---------EDVE--------------LHS--G 59 (438)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHH-H---------CCCE--------------EEE--C
T ss_conf 974999906785899999999669-98469996398893688762-0---------6976--------------972--7
Q ss_pred CCCCCC-CCCCEEEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 333344-6563278606643332122001105842
Q gi|254780654|r 82 PQDLPW-GDVDVAMECTGFFVTQEKASLHLSNGSQ 115 (333)
Q Consensus 82 p~~i~W-~~vDiViEcTG~f~~~~~~~~HL~~Gak 115 (333)
....+| .++|+|+-+.|+-.+...+..-.+.|++
T Consensus 60 ~~~~~~l~~~d~vV~SPGI~~~~p~~~~a~~~~i~ 94 (438)
T PRK04663 60 GWNQDWLAEADLVVTNPGIALATPEIQPVLAKGIP 94 (438)
T ss_pred CCCHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCC
T ss_conf 88967836899999899769989899999986993
No 97
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.99 E-value=2 Score=23.26 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=64.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEE-ECCCCCCCCCCCCCCCCC
Q ss_conf 6189885668688999999996888872899960688999999887514412556740898-365300165654211012
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKI-IGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~-~~~~l~in~~~i~i~~~~ 80 (333)
+|||+|-|+|-||-.+.+.+-+ .+++|.++.- +.+++...++...+-..+.. ... .+-.|+|---++..+.+-
T Consensus 1 ~mkI~IiGlGLIGgSla~al~~---~~~~V~g~d~--~~~~~~~A~~~g~id~~~~~-~~~~~~aDliila~Pv~~~~~~ 74 (280)
T PRK07417 1 SMNIGIVGLGLIGGSLGLDLRS---LGHTVYGVSR--RESTCERAIERGLVDEASTD-LSLLKDCDLVILALPIGLLLPP 74 (280)
T ss_pred CCEEEEEECCHHHHHHHHHHHH---CCCEEEEEEC--CHHHHHHHHHCCCCCEECCC-HHHHCCCCEEEECCCHHHHHHH
T ss_conf 9789999318579999999996---8997999979--99999999986997520278-7460579989987974778999
Q ss_pred CCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEEC
Q ss_conf 3333344-656327860664333212200110584234330367887348984055321222210330
Q gi|254780654|r 81 DPQDLPW-GDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVS 147 (333)
Q Consensus 81 ~p~~i~W-~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS 147 (333)
-.+-.+. +.--+|.|.++.-.... .-++.=..+-|-+.|..+-.+.=.-....+.|+...-|++
T Consensus 75 ~~~~~~~l~~~~iitDv~SvK~~i~---~~~~~~~~~fVg~HPMAGsE~sG~~~a~~dLF~~~~~il~ 139 (280)
T PRK07417 75 SEELIPALPPEAIVTDVGSVKEPIV---EAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLT 139 (280)
T ss_pred HHHHHHHCCCCCEEEECHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
T ss_conf 9999864789848996522307899---9998607986236980768887712034667507539985
No 98
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.35 E-value=0.56 Score=26.89 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=42.4
Q ss_pred CCE-EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH-------HHHHHHCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 961-8988566868899999999688887289996068899999-------98875144125567408983653001656
Q gi|254780654|r 1 MVC-KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETM-------AHLLRYDSVHGRFPGEVKIIGDTIDVGLG 72 (333)
Q Consensus 1 M~i-kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~-------~~Ll~yDS~hG~~~~~v~~~~~~l~in~~ 72 (333)
|+| ||+|-|-|.+|+.+.-.+.. .+++|+.. |. +.+.+ ...|+.---.|++.. ....---.
T Consensus 1 m~i~~VaViGaG~mG~~IA~~~a~---~G~~V~l~-D~-~~~~l~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~ 69 (282)
T PRK05808 1 MSIQKIGVIGAGTMGNGIAQVCAV---AGYDVVMV-DI-SDEAVDRGLATITKSLDRLVKKGKMTE------ADKEAALA 69 (282)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---CCCCEEEE-EC-CHHHHHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHH
T ss_conf 972689998978899999999995---79938999-79-989999999999999999997088642------66999995
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 542110123333344656327860664
Q gi|254780654|r 73 PIQVTSIRDPQDLPWGDVDVAMECTGF 99 (333)
Q Consensus 73 ~i~i~~~~~p~~i~W~~vDiViEcTG~ 99 (333)
+|++. .+.+. ..++|+||||-=-
T Consensus 70 ~i~~~--~dl~~--~~~aDlViEav~E 92 (282)
T PRK05808 70 RITGT--TDLDD--LKDADLVIEAAVE 92 (282)
T ss_pred HCCCC--CCHHH--HCCCCEEEECCCC
T ss_conf 26366--88889--6759999987756
No 99
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.89 E-value=0.89 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=23.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 18988566868899999999688887289996068
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
.++||-|+|+||+.+.+.+-. .++++.+ +|+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a---fG~~vl~-~DP 147 (379)
T PRK00257 117 RTYGIVGVGHVGGRLVRVLRG---LGWKVLV-CDP 147 (379)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEE-ECC
T ss_conf 879997716799999999997---7998999-784
No 100
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.72 E-value=1.5 Score=24.09 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=67.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCC---CCCCCC-C-
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001---656542-1-
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDV---GLGPIQ-V- 76 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~i---n~~~i~-i- 76 (333)
+||||+-|+|+.|+...|.+++. ++++..- |+ +.+....|.+.-.....-+.++-...+-++. ++..++ +
T Consensus 1 ~MkIgfIGlG~MG~~ma~~L~~~---G~~v~v~-dr-~~~~~~~l~~~Ga~~~~s~~e~~~~~dvvi~~l~~~~~v~~v~ 75 (295)
T PRK11559 1 TMKVGFIGLGIMGKPMSKNLLKA---GYSLVVY-DR-NPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVA 75 (295)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC---CCEEEEE-EC-CHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 97899984057699999999978---9958999-29-9999999998599203999999843887899668981077663
Q ss_pred CCCCCCCCCCCC-CCCEEEEECCC-CCCCCCCCHHHH-CCCCEEEEECCCC-------CCCEEEEEECCCCCCCCCCEEE
Q ss_conf 101233333446-56327860664-333212200110-5842343303678-------8734898405532122221033
Q gi|254780654|r 77 TSIRDPQDLPWG-DVDVAMECTGF-FVTQEKASLHLS-NGSQRVLVSAPCK-------GVKKTIVYGVNHQSLNKEDKVV 146 (333)
Q Consensus 77 ~~~~~p~~i~W~-~vDiViEcTG~-f~~~~~~~~HL~-~GakkVIiSaP~k-------d~~~tiV~GvN~~~~~~~~~Ii 146 (333)
+.+... +.-. .=.++||||-. ..+..+....+. .|+.. +-||.. +-..++..|-.++.|+.-.+++
T Consensus 76 ~g~~gi--~~~~~~g~iiid~sT~~p~~~~~~a~~~~~~g~~~--lDaPVsGg~~~A~~G~L~~mvgG~~~~~~~~~piL 151 (295)
T PRK11559 76 LGENGI--IEGAKPGTVLIDMSSIAPLASREISEALKAKGIEM--LDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 151 (295)
T ss_pred HCCCCC--HHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEE--EECCCCCCHHHHHHCCCEEEECCCHHHHHHHHHHH
T ss_conf 077660--11389998899899999999999999999659838--94247688688984881499679889999999999
No 101
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=87.59 E-value=0.89 Score=25.58 Aligned_cols=126 Identities=12% Similarity=0.212 Sum_probs=62.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|+|||+-|+|++|+...|.+++. ++++..-| . +.+....+.+.- .++-.++. + .+....+-++.-.+
T Consensus 1 M~~Ig~IGlG~MG~~ma~~L~~~---g~~v~v~d-~-~~~~~~~~~~~g---~~~~~s~~---e--~~~~~dvIi~~l~~ 67 (163)
T pfam03446 1 MAKIGFIGLGVMGSPMALNLLKA---GYTVTVYN-R-TPEKVEELVAEG---AVAAASPA---E--AAASADVVITMVPA 67 (163)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC---CCEEEEEE-C-CHHHHHHHHHCC---CEECCCHH---H--HHHCCCEEEEECCC
T ss_conf 98899983679899999999977---99699997-9-788779999839---95539999---9--98619999992587
Q ss_pred CCC---CCC---------CCCCEEEEECCCCC-CCCCCCHHH-HCCCCEEEEECCCC-------CCCEEEEEECCCCCCC
Q ss_conf 333---344---------65632786066433-321220011-05842343303678-------8734898405532122
Q gi|254780654|r 82 PQD---LPW---------GDVDVAMECTGFFV-TQEKASLHL-SNGSQRVLVSAPCK-------GVKKTIVYGVNHQSLN 140 (333)
Q Consensus 82 p~~---i~W---------~~vDiViEcTG~f~-~~~~~~~HL-~~GakkVIiSaP~k-------d~~~tiV~GvN~~~~~ 140 (333)
++. +-. ..=.++||||-... +..+..+-+ +.|+.. +-||.. .-..++..|-+.+.|+
T Consensus 68 ~~~v~~V~~~~~gl~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~--lDaPVsGg~~~A~~G~L~~m~gG~~~~~~ 145 (163)
T pfam03446 68 GAAVDAVIFGEDGLLPGLKPGDIIIDGSTISPDDTRRLAKELKEKGIRF--LDAPVSGGEEGAEAGTLSIMVGGDEEAFE 145 (163)
T ss_pred HHHHHEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCCHHHHHCCCEEEEECCCHHHHH
T ss_conf 1454022026313323135898898679899999999999875303443--47877689899944887999758999999
Q ss_pred CC
Q ss_conf 22
Q gi|254780654|r 141 KE 142 (333)
Q Consensus 141 ~~ 142 (333)
.-
T Consensus 146 ~~ 147 (163)
T pfam03446 146 RV 147 (163)
T ss_pred HH
T ss_conf 99
No 102
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.33 E-value=2.6 Score=22.59 Aligned_cols=104 Identities=20% Similarity=0.160 Sum_probs=54.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 89885668688999999996888872899960688999999887514412556740898365300165654211012333
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQ 83 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~ 83 (333)
++.|-|-|-||-+....+-- . .--+|+++ |. +.+.++.--++.. .++-.. .... -......
T Consensus 171 ~V~V~GaGpIGLla~~~a~~-~-Ga~~Viv~-d~-~~~Rl~~A~~~~g------~~~~~~------~~~~---~~~~~~~ 231 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL-L-GASVVIVV-DR-SPERLELAKEAGG------ADVVVN------PSED---DAGAEIL 231 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH-C-CCCEEEEE-CC-CHHHHHHHHHHCC------CCEEEC------CCCH---HHHHHHH
T ss_conf 89998888999999999987-6-98279997-99-9899999998779------718724------6301---4788999
Q ss_pred CCCCC-CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCC
Q ss_conf 33446-56327860664333212200110584234330367887
Q gi|254780654|r 84 DLPWG-DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGV 126 (333)
Q Consensus 84 ~i~W~-~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~ 126 (333)
++..+ ++|+|+||||.....+.+-..++.|-+=|++.-+..+.
T Consensus 232 ~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~ 275 (350)
T COG1063 232 ELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGED 275 (350)
T ss_pred HHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 86089879999999899799999999602598999995158866
No 103
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.20 E-value=1.3 Score=24.51 Aligned_cols=41 Identities=29% Similarity=0.625 Sum_probs=30.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8988566868899999999688887289996068899999988751
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY 49 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y 49 (333)
+|-|-||||.||.+.|.+.++ ++..++|-. |++....+-++
T Consensus 401 ~VII~G~GRvGq~var~L~~~---gi~~vviD~--d~~~V~~~r~~ 441 (615)
T PRK03562 401 RVIIAGFGRFGQIVGRLLLSS---GVKMVVLDH--DPDHIETLRKF 441 (615)
T ss_pred CEEEEECCCCHHHHHHHHHHC---CCCEEEEEC--CHHHHHHHHHC
T ss_conf 989990280469999999978---998799979--99999999967
No 104
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.90 E-value=2.7 Score=22.43 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=51.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-------CCCEEEEEECCC---------CCHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 618988566868899999999688-------887289996068---------8999999887514412556740898365
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESR-------RDDVRIVAINDL---------NSIETMAHLLRYDSVHGRFPGEVKIIGD 65 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~-------~~~i~ivaINd~---------~~~~~~~~Ll~yDS~hG~~~~~v~~~~~ 65 (333)
.+.|+|-|.|-||+.+++|+.+.+ +-+++|++|-+. .+++.....|+-+++ ....+
T Consensus 458 ~i~v~l~G~G~VG~~ll~qi~~q~~~l~~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~~~~~--------~~~~~ 529 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGIDASRALAFFDDEAV--------EQDEE 529 (810)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHCCC--------CCCHH
T ss_conf 5779998257288999999999999988750973799999747505756889898999998765267--------67699
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 30016565421101233333446563278606643332122001105842
Q gi|254780654|r 66 TIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQ 115 (333)
Q Consensus 66 ~l~in~~~i~i~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~Gak 115 (333)
. +... ..+.+. .-.+++|||.--.-.......|++|..
T Consensus 530 ~---------~~~~--~~~~~~-~~~v~vD~t~s~~~~~~y~~~l~~g~~ 567 (810)
T PRK09466 530 S---------LFLW--LRAHPY-DELVVLDVTASEQLALQYPDFASHGFH 567 (810)
T ss_pred H---------HHHH--HHHCCC-CCCEEEECCCCHHHHHHHHHHHHHCCE
T ss_conf 9---------9999--985388-887799757478899999999981987
No 105
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.89 E-value=2 Score=23.31 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=54.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHC--CCCCCCCC-EEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9885668688999999996888872899960688999999887514--41255674-08983653001656542110123
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYD--SVHGRFPG-EVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yD--S~hG~~~~-~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
+-|-||||+||.+.|.+-+. ++.+++|-. |++....+-+++ -+||--.. ++- ...-++.-+.-+..-.|
T Consensus 420 vii~G~Gr~G~~va~~L~~~---~~~~vvid~--d~~~v~~~~~~g~~v~~GDa~~~~~L---~~agi~~A~~vvit~~d 491 (558)
T PRK10669 420 ALLVGYGRVGSLLGEKLLAS---GIPLVVIET--SRTRVDELRERGIRAVLGNAANEEIM---QLAHLDCARWLLLTIPN 491 (558)
T ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEEC--CHHHHHHHHHCCCEEEEECCCCHHHH---HHCCCCCCCEEEEEECC
T ss_conf 89989886699999999987---998899989--89999999968997999789988999---85791324999998198
Q ss_pred CCCCC-----C----CCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE
Q ss_conf 33334-----4----65632786066433321220011058423433
Q gi|254780654|r 82 PQDLP-----W----GDVDVAMECTGFFVTQEKASLHLSNGSQRVLV 119 (333)
Q Consensus 82 p~~i~-----W----~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi 119 (333)
+++-. . .++.++.-+ ++.+.+....++||..|+.
T Consensus 492 ~~~~~~iv~~~r~~~p~~~IiaRa----~~~~~~~~L~~aGA~~VV~ 534 (558)
T PRK10669 492 GYEAGEIVASAREKNPDIEIIARA----HYDDEVAYITERGANQVVM 534 (558)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEEC
T ss_conf 899999999999878698699997----9899999999779998989
No 106
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.35 E-value=1.8 Score=23.54 Aligned_cols=41 Identities=32% Similarity=0.605 Sum_probs=29.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8988566868899999999688887289996068899999988751
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY 49 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y 49 (333)
.|-|-||||.||.+.|.+.++ ++..++|-. |++....+=++
T Consensus 402 ~VII~G~GR~Gq~var~L~~~---gi~~vviD~--d~~~V~~~r~~ 442 (602)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMAN---KMRITVLER--DISAVNLMRKY 442 (602)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEC--CHHHHHHHHHC
T ss_conf 989978875689999999978---999899978--67999999978
No 107
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.28 E-value=1.5 Score=24.10 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=46.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEE-ECCCCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688999999887514412556740898-36530016565421101
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKI-IGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~-~~~~l~in~~~i~i~~~ 79 (333)
|||||.|-|-|-||-++.-.+ .+...+ |+.| +. .+....+-+ +| -.+.. .+....+.-..+. ..
T Consensus 1 ~mmkI~IiGaGAvG~~~a~~L-~~aG~~--V~lv-~r--~~~~~~i~~----~G---l~i~~~~~~~~~~~~~~~~--~~ 65 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRL-AAAGAD--VTLI-GR--ARIGDEIRA----HG---LRLTDYRGRDVRVPPDAIA--FS 65 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCC--EEEE-EC--HHHHHHHHH----CC---CEEECCCCCEEEECCCEEE--EC
T ss_conf 947799989679999999999-858998--7999-56--789999996----79---0996389976896366156--14
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 2333334465632786066433321220
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKAS 107 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~ 107 (333)
.+|+++ ...|++|=|+=.+.+.+-++
T Consensus 66 ~~~~~~--~~~D~viv~vKa~~~~~a~~ 91 (341)
T PRK08229 66 TDPAAL--ATADLVLVTVKSAATADAAA 91 (341)
T ss_pred CCHHHC--CCCCEEEEEECCCCHHHHHH
T ss_conf 886565--89998999707578899999
No 108
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.04 E-value=3 Score=22.14 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=60.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|+||-|-|-|+|||.+.+-+..+...++.+ -|. +.+.++-... ++.++.. .+.++- .+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~i---AdR-s~~~~~~i~~--~~~~~v~--------~~~vD~--------~d 58 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTI---ADR-SKEKCARIAE--LIGGKVE--------ALQVDA--------AD 58 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEE---EEC-CHHHHHHHHH--HCCCCCE--------EEEECC--------CC
T ss_conf 972899898666799999998578962999---848-8889999875--3346631--------699425--------67
Q ss_pred CCCC-C-CCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 3333-4-465632786066433321220011058423433036
Q gi|254780654|r 82 PQDL-P-WGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 82 p~~i-~-W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP 122 (333)
++.+ . -++.|+||-|-.-|.+..-+++-++.|+..|=+|.-
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 5889998725778999287054299999999859988975467
No 109
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=85.99 E-value=3 Score=22.13 Aligned_cols=230 Identities=22% Similarity=0.223 Sum_probs=106.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 618988566868899999999688-8872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESR-RDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~-~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|+|||+-|+|.+|+.+++-+++.. .+..+|...|. +.+.+.++.+ +|+..+ ..++.-.++...+-|..-+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l~~------~~g~~~-~~~~~~~~~~advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAALAA------EYGVVT-TTDNQEAVEEADVVFLAVK 71 (266)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECC--CHHHHHHHHH------HCCCCC-CCCHHHHHHHCCEEEEEEC
T ss_conf 965899846889999999999668998023898379--9999999999------849855-6867988740898999848
Q ss_pred CCCCC---------CCCCCCEEEEECCCCCCCCCCCHHHH-CCCCEEEEECCCC-CCCEEEEEECCCCCCCCCCEEECCC
Q ss_conf 33333---------44656327860664333212200110-5842343303678-8734898405532122221033057
Q gi|254780654|r 81 DPQDL---------PWGDVDVAMECTGFFVTQEKASLHLS-NGSQRVLVSAPCK-GVKKTIVYGVNHQSLNKEDKVVSNA 149 (333)
Q Consensus 81 ~p~~i---------~W~~vDiViEcTG~f~~~~~~~~HL~-~GakkVIiSaP~k-d~~~tiV~GvN~~~~~~~~~IiS~a 149 (333)
|..+ .+.+-=+|==..| .+.+.++.+|. ..+-||+=..|+. ..-.|.++ .+.
T Consensus 72 -Pq~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~--------------~~~ 134 (266)
T COG0345 72 -PQDLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVVRVMPNTPALVGAGVTAIS--------------ANA 134 (266)
T ss_pred -HHHHHHHHHHHHCCCCCCEEEEEECC--CCHHHHHHHCCCCCEEEECCCHHHHHCCCCEEEE--------------CCC
T ss_conf -27689999973235688879997079--9799999874899669967885889717522651--------------376
Q ss_pred CCCHH---HHHHHHHHHHHCCCHHHHHCCCCCCCCCCC---------CCCCCC-CCCC--CCCCCCCCCCCCCCCHHHHH
Q ss_conf 64102---346688875412102322100113453222---------355665-4530--00112365646453112456
Q gi|254780654|r 150 SCTTN---CLVPVVHVLDKMFGIEKGYMTTVHSYTGDQ---------HVLDAG-HSDL--YRSRAAAISMVPTSTGAAKA 214 (333)
Q Consensus 150 SCTtn---~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q---------~l~D~~-~~d~--Rr~Raa~~niIPt~Tgaa~a 214 (333)
.|+-. -+.-+++.+-+.+.|.+..|-.+-+.+++= .+.|+. ...+ ..+|. =...+--|+++.
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~---l~~~t~~Gaakl 211 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARE---LAAQTVAGAAKL 211 (266)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHH
T ss_conf 58988999999999825986996467714999984486899999999999999985999999999---999999999999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 77776201787104343123353101123433201220678899998741
Q gi|254780654|r 215 VELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFA 264 (333)
Q Consensus 215 i~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as 264 (333)
+.+--. .-...-=||-+|.|..+.=.-.|++.-=..-+.+++.++.
T Consensus 212 l~e~~~----~p~~Lr~~VtSPGGtTiagl~~le~~g~~~~v~~av~aa~ 257 (266)
T COG0345 212 LLESGE----HPAELRDQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAAY 257 (266)
T ss_pred HHHCCC----CHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 986699----9799998575998408999999988073999999999999
No 110
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=85.84 E-value=1.3 Score=24.46 Aligned_cols=91 Identities=22% Similarity=0.183 Sum_probs=62.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
.|+.|-|.|+.|+.++...++. .++.++++=|..+ ++... .++|.++ + .+.
T Consensus 4 ~~v~liG~g~lG~al~~~~~~~--~~~~i~~vfdv~p--------------~~~G~---------~i~gipv--~--~~l 54 (96)
T pfam02629 4 TKVAVIGASGLGIQGLYHFIQL--LGYGIKMVFGVNP--------------RKGGT---------EVGGIPV--Y--KSV 54 (96)
T ss_pred CEEEEECCCCCHHHHHHHHHHH--HCCCEEEEEECCC--------------CCCCC---------EECCEEE--E--CCH
T ss_conf 7499999898278887768877--1486189980692--------------42775---------8889984--3--108
Q ss_pred CCCCCC-CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 333446-5632786066433321220011058423433036
Q gi|254780654|r 83 QDLPWG-DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 83 ~~i~W~-~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP 122 (333)
++++.. ++|+.+=|.-.....+-+..-.++|+|-++.=+|
T Consensus 55 ~~~~~~~~idiaii~VP~~~a~~~~~~~v~~GIk~i~nft~ 95 (96)
T pfam02629 55 DELEEDTGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITP 95 (96)
T ss_pred HHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 77741558878999947899899999999869989999488
No 111
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=85.79 E-value=1.1 Score=24.97 Aligned_cols=78 Identities=26% Similarity=0.227 Sum_probs=47.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC--C-EEEEECCCCCCCCCCCCCCCCC
Q ss_conf 898856686889999999968888728999606889999998875144125567--4-0898365300165654211012
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFP--G-EVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~--~-~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|+-.-||||+|+.+.|.+-.- ...+.|.|= +.+.+|--.+ --|-.|+ . +-++.|=.|+||.-+-.+....
T Consensus 154 ~v~VlGfGRtG~tiAr~f~aL-GA~V~V~AR----~~~dlARI~E--~g~~P~~~~~L~~~v~e~DIviNTiPaLvlt~~ 226 (288)
T TIGR02853 154 NVMVLGFGRTGMTIARTFSAL-GARVSVGAR----SSADLARITE--MGLEPVPLNKLEEKVAEIDIVINTIPALVLTKD 226 (288)
T ss_pred EEEEECCCCHHHHHHHHHHHC-CCEEEEECC----CHHHHHHHHH--HCCCCCCHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 457884470568999999726-980575317----8367899999--606882716788765000247706763003658
Q ss_pred CCCCCCCC
Q ss_conf 33333446
Q gi|254780654|r 81 DPQDLPWG 88 (333)
Q Consensus 81 ~p~~i~W~ 88 (333)
-.+++|-.
T Consensus 227 ~l~~lp~~ 234 (288)
T TIGR02853 227 VLSKLPKH 234 (288)
T ss_pred HHHHCCCC
T ss_conf 99526858
No 112
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=85.71 E-value=2.5 Score=22.60 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=49.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHH-HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 6189885668688999999996888872899960688-9999998-8751441255674089836530016565421101
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAH-LLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~-Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
..||.+-|+|+-||.+.|.+.+. +.++. ++|.. ..+...- .+.++ .|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~v~-v~D~~~~~~~~~~~~~~~~----------------------~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAEVT-VSDDRPAPEGLAAQPLLLE----------------------GIEVELG 60 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHC---CCEEE-EECCCCCCCCHHHHHHHCC----------------------CCEEECC
T ss_conf 99799992665109999999977---98699-9838987653234444203----------------------7223137
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 233333446563278606643332122001105842
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQ 115 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~Gak 115 (333)
+.+. .+|.+.|+|+-+-|+..+..-++.-.+.|++
T Consensus 61 ~~~~-~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 61 SHDD-EDLAEFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred CCCH-HCCCCCCEEEECCCCCCCCHHHHHHHHCCCC
T ss_conf 6411-0013477899899999988899999986993
No 113
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=85.55 E-value=1.9 Score=23.46 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=51.8
Q ss_pred EEEEECCCHHHH--HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf 898856686889--99999996888872899960688999999887514412556740898365300165654-211012
Q gi|254780654|r 4 KVAINGFGRIGR--CILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPI-QVTSIR 80 (333)
Q Consensus 4 kIgINGfGRIGR--~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i-~i~~~~ 80 (333)
||.|-|+||-|| .+.|.+.+. +..+. +.|....+. .+......+... .+.+..
T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~~-g~~~~---~~D~~~~~~--------------------~~~~~~~~~~~~~~~l~~~ 56 (476)
T TIGR01087 1 KILILGLGKTGRGVAVARFLKKK-GAEVT---VTDDDPEEE--------------------LERSKGQLKLSEGVVLYTG 56 (476)
T ss_pred CEEEEEECCCCHHHHHHHHHHHC-CCEEE---EEECCCCCC--------------------CCCHHHHCCCCCCEEEEEC
T ss_conf 97899867510789999999972-98799---998452213--------------------4311331245564135326
Q ss_pred CCCCC-CCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE
Q ss_conf 33333-446563278606643332122001105842343
Q gi|254780654|r 81 DPQDL-PWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL 118 (333)
Q Consensus 81 ~p~~i-~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI 118 (333)
.-.+. +|.++|+||-+-|+--+....+.-.+.|++ |+
T Consensus 57 ~~~~~~~~~~~d~vv~SPGi~~~hp~~~~a~~~g~~-v~ 94 (476)
T TIGR01087 57 GKDDLEDLNNADLVVLSPGIPPDHPLVQAAAKRGIP-VV 94 (476)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCE-EE
T ss_conf 753101233420799789898677799999966980-89
No 114
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=85.06 E-value=2.1 Score=23.21 Aligned_cols=94 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98856686889999999968888728999606889999998875144125567408983653001656542110123333
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQD 84 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~~ 84 (333)
|-|-||||+|+.+.|.+.+. + +++.|-. |.+....+-+.+ ..+ +.-+.....+. .+
T Consensus 1 viI~G~g~~G~~la~~L~~~---~-~v~vId~--d~~~~~~~~~~~-------~~v------i~GD~~~~~~L-----~~ 56 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREG---G-PVVVIDK--DPERVEELREEG-------VPV------VVGDATDEEVL-----EE 56 (115)
T ss_pred CEEECCCHHHHHHHHHHHHC---C-CEEEEEC--CHHHHHHHHHCC-------CEE------EEEECCCHHHH-----HH
T ss_conf 99987888999999999808---9-9999999--879987788669-------869------99956886678-----76
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHH--CCCCEEEEECC
Q ss_conf 344656327860664333212200110--58423433036
Q gi|254780654|r 85 LPWGDVDVAMECTGFFVTQEKASLHLS--NGSQRVLVSAP 122 (333)
Q Consensus 85 i~W~~vDiViEcTG~f~~~~~~~~HL~--~GakkVIiSaP 122 (333)
..-.+.|.|+=+|+--..--.+..+++ .+..++|.-+-
T Consensus 57 a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iiar~~ 96 (115)
T pfam02254 57 AGIEDADAVVAATGDDEANILIVLLARELNPAKKIIARAN 96 (115)
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 1920287999962984999999999999789980999987
No 115
>KOG1203 consensus
Probab=84.64 E-value=3.5 Score=21.72 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=78.8
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
..|-.-| -||+||.+.+.++++ +|.+.+.- -|.+.-.-+++ +...-...-.++.+ .++...+.. +.
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkr---gf~vra~V--Rd~~~a~~~~~---~~~~d~~~~~v~~~--~~~~~d~~~---~~ 146 (411)
T KOG1203 80 TTVLVVGATGKVGRRIVKILLKR---GFSVRALV--RDEQKAEDLLG---VFFVDLGLQNVEAD--VVTAIDILK---KL 146 (411)
T ss_pred CEEEEECCCCCHHHHHHHHHHHC---CCEEEEEC--CCHHHHHHHHC---CCCCCCCCCEEEEC--CCCCCCHHH---HH
T ss_conf 74999558873639999999977---97023421--57365544432---53334442224302--256541225---66
Q ss_pred CCCCCCCCCCEEEEECCCCCCCC--CCCHHHH-CCCCEEEEECCCCCCCEEE-EEECCCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 33334465632786066433321--2200110-5842343303678873489-840553212222103305764102346
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQE--KASLHLS-NGSQRVLVSAPCKGVKKTI-VYGVNHQSLNKEDKVVSNASCTTNCLV 157 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~--~~~~HL~-~GakkVIiSaP~kd~~~ti-V~GvN~~~~~~~~~IiS~aSCTtn~la 157 (333)
.+..=..+.+|+-|.|..-..+ .-..-.+ -|+|++|-++-..+.-.-+ |-.++..+++...++... |.+.
T Consensus 147 -~~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~-----~~~~ 220 (411)
T KOG1203 147 -VEAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLL-----NGLV 220 (411)
T ss_pred -HHHCCCCCEEEEECCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHH-----HHHH
T ss_conf -6301345315874234778754578844216788899999999838745999976347646777255555-----4435
Q ss_pred HHHHHHHHCCCHHHHHCCC-CCCCCCCC
Q ss_conf 6888754121023221001-13453222
Q gi|254780654|r 158 PVVHVLDKMFGIEKGYMTT-VHSYTGDQ 184 (333)
Q Consensus 158 Pvlk~l~~~~gI~~g~~TT-iH~~t~~Q 184 (333)
-.-|.+.+.|-.++|.=.| |.+-+..|
T Consensus 221 ~~~k~~~e~~~~~Sgl~ytiIR~g~~~~ 248 (411)
T KOG1203 221 LKAKLKAEKFLQDSGLPYTIIRPGGLEQ 248 (411)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 6787769999986589867995321004
No 116
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.57 E-value=1.9 Score=23.42 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=21.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHC
Q ss_conf 961898856686889999999968
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVES 24 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~ 24 (333)
|+++|+|-|+|.||+++.|.+-+.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~ 25 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA 25 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC
T ss_conf 864899987746779999999976
No 117
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.71 E-value=3.8 Score=21.47 Aligned_cols=45 Identities=20% Similarity=0.489 Sum_probs=30.0
Q ss_pred CC--EEEEEECCCHHHHHHHHHHHHCCCCCE-EEEEECCCCCHHHHHHH
Q ss_conf 96--189885668688999999996888872-89996068899999988
Q gi|254780654|r 1 MV--CKVAINGFGRIGRCILRAAVESRRDDV-RIVAINDLNSIETMAHL 46 (333)
Q Consensus 1 M~--ikIgINGfGRIGR~v~R~~~~~~~~~i-~ivaINd~~~~~~~~~L 46 (333)
|| .||++-|.|.+|+.+++-+++...... ++...+ ..+.+.+..|
T Consensus 1 m~~~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~-~~~~~~~~~l 48 (245)
T PRK07634 1 MLTKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSN-RSNVEKLDQL 48 (245)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEC-CCCHHHHHHH
T ss_conf 99999199987589999999999977999960599969-9999999999
No 118
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=83.14 E-value=3.8 Score=21.48 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 2206788999987410
Q gi|254780654|r 250 DVNIDEINATMKYFAE 265 (333)
Q Consensus 250 ~~t~e~in~~~~~as~ 265 (333)
.-..|+++++|+.+.+
T Consensus 315 ~f~Lee~~eA~~~~~~ 330 (341)
T PRK05396 315 RFPIDDFQKGFEAMRS 330 (341)
T ss_pred EEEHHHHHHHHHHHHC
T ss_conf 9889999999999977
No 119
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.14 E-value=2.4 Score=22.81 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=72.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889--9999988751441255674089836530016565421101
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS--IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
|-||+|-|-|++|-.+.-.++...-. +++-+ |+.. ++--+- |--|+. ...+.+.+++..
T Consensus 1 M~KV~IIGaG~VG~~~A~~l~~~~~~--eivLi-Di~~~~a~g~a~----Dl~h~~------------~~~~~~~~i~~~ 61 (313)
T PTZ00117 1 MKKISIIGSGQIGAIVGLLLLQENLG--DVYLY-DVIEGVPQGKAL----DLKHFS------------TIIGVNANILGT 61 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC--EEEEE-ECCCCHHHHHHH----HHHHHH------------HCCCCCCEEEEC
T ss_conf 97899989798999999999708998--79999-588983088998----877242------------036898579837
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHH---------------H-C--CCCEEEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 2333334465632786066433321220011---------------0-5--84234330367887348984055321222
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHL---------------S-N--GSQRVLVSAPCKGVKKTIVYGVNHQSLNK 141 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL---------------~-~--GakkVIiSaP~kd~~~tiV~GvN~~~~~~ 141 (333)
.+.+++ ++.|+|+=+.|.-+.....+.-| . . .+.-+++|-|. |. .+.++ -....| |
T Consensus 62 ~dy~~~--~daDiVVitAG~~rk~g~tR~dLl~~N~~I~~~i~~~i~~~~p~aiiivvtNPv-Di-mt~v~-~k~sg~-p 135 (313)
T PTZ00117 62 NNYEDI--KDSDVIVITAGVQRKEGMTREDLIGVNGKIMKSVAESVKKHCPNAFVICVSNPL-DI-MVNVF-KKKSGL-P 135 (313)
T ss_pred CCHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-HH-HHHHH-HHHHCC-C
T ss_conf 999996--899999989899899799889999876777888887762358980899789948-99-99999-986289-8
Q ss_pred CCEEECCCC-CCHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 210330576-410234668887541210232210011345
Q gi|254780654|r 142 EDKVVSNAS-CTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 142 ~~~IiS~aS-CTtn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
.+++|..+. -.| +=+-+.|.+.+++.... ||+|
T Consensus 136 ~~rViG~gt~LDs---aR~r~~la~~l~v~~~~---V~~~ 169 (313)
T PTZ00117 136 HEKICGMAGILDT---SRFRCLLARKLKVKPSD---VSAV 169 (313)
T ss_pred HHHEEECCCEEEH---HHHHHHHHHHHCCCCCC---EEEE
T ss_conf 6776700440208---89999999996899221---3777
No 120
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.94 E-value=4.1 Score=21.27 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=30.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 6189885668688999999996888-8728999606889999998875
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
|.|||+-|.|++|..+++-+++... +.-++.. -+..+.+.+..+.+
T Consensus 1 M~kI~fIG~GnMg~Aii~Gll~~~~~~~~~i~v-~~~~~~~~~~~~~~ 47 (275)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVITPEEIIL-YSRSENEHFKQLYD 47 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEE-ECCCCHHHHHHHHH
T ss_conf 988999867899999999999789999636999-78993899999998
No 121
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=81.84 E-value=4.5 Score=21.01 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=49.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|++++|-|.|.||-.+.|.+... +.||+-.|. ..++.++-+-++-.. . +.-..+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a---g~eV~igs~-r~~~~~~a~a~~l~~------~----------------i~~~~~ 54 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA---GHEVIIGSS-RGPKALAAAAAALGP------L----------------ITGGSN 54 (211)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEECC-CCHHHHHHHHHHHCC------C----------------CCCCCH
T ss_conf 91799962571878999999967---973999647-880678899986456------5----------------334776
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 33334465632786066433321220011058423433036
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP 122 (333)
++.. ...|+|+-..=.....+-+..+.+.=-.|++|+..
T Consensus 55 ~dA~--~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 55 EDAA--ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HHHH--HCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 8888--43998999545787776999999870990999668
No 122
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.61 E-value=4.5 Score=20.95 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=40.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
-||.|-|+|+-|+.+.|.+.+. +.+|. +.|-. ++.+..+.+ ..+ .+ .+.
T Consensus 10 k~v~v~GlG~sG~s~a~~L~~~---G~~V~-~~D~~-~~~~~~~~~----------------~g~-------~~---~~~ 58 (457)
T PRK01390 10 KTVALFGLGGSGLATARALKAG---GAEVI-AWDDN-PDSVAKAAA----------------AGI-------AT---ADL 58 (457)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEE-EEECC-CHHHHHHHH----------------CCC-------CC---CCC
T ss_conf 9899994369999999999978---99799-99399-206689987----------------598-------31---455
Q ss_pred CCCCCCCCCEEEEECCCCCCCC
Q ss_conf 3334465632786066433321
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQE 104 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~ 104 (333)
.+.+|.++|.++-+.|+-.+..
T Consensus 59 ~~~~~~~~~~iV~SPGIp~~~p 80 (457)
T PRK01390 59 RTADWSQFAALVLSPGVPLTHP 80 (457)
T ss_pred CCCCCCCCCEEEECCCCCCCCC
T ss_conf 4123203878999998886566
No 123
>pfam06115 DUF956 Domain of unknown function (DUF956). Family of bacterial sequences with undetermined function.
Probab=81.49 E-value=0.58 Score=26.82 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=30.7
Q ss_pred ECCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEE---CCCCCCC
Q ss_conf 3653001656542110123333---344656327860---6643332
Q gi|254780654|r 63 IGDTIDVGLGPIQVTSIRDPQD---LPWGDVDVAMEC---TGFFVTQ 103 (333)
Q Consensus 63 ~~~~l~in~~~i~i~~~~~p~~---i~W~~vDiViEc---TG~f~~~ 103 (333)
.-+.+.|+++..-|++++++++ |||.++|+|.-+ -|++-.+
T Consensus 23 ~yGkimiGDkaFEFYn~~n~~dyIQIPW~eI~~V~A~V~fkgk~I~R 69 (118)
T pfam06115 23 KYGKIMIGDKGFEFYNDRNVEDYIQIPWEEIDYVGADVSFKGKWIPR 69 (118)
T ss_pred CCCEEEECCCCEEECCCCCHHHCEEECHHHEEEEEEEEEECCCEEEE
T ss_conf 56749885642787079996675785624447999999989959854
No 124
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.18 E-value=4.7 Score=20.86 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=47.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688-9999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
-||+|-|+||=|+.+.|.+.+.. . -.++.+.|-. +......+. +. ...+.. +
T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~g-~-~~~v~~~~~~~~~~~~~~~~--~~---------------------~~~~~~--~ 61 (468)
T PRK04690 9 KRVALWGWGREGRAAYRALRAQL-P-AQPLTVFCNAEEVREVGALA--DA---------------------ALLVET--E 61 (468)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC-C-EEEEEECCCCCCCHHHHHHC--CC---------------------CCEEEC--C
T ss_conf 97999834787999999999669-9-04999728832464667620--45---------------------756746--7
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 3333446563278606643332122001105842
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQ 115 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~Gak 115 (333)
+..-.|.++|+|+=+.|+-.+...++.-.+.|++
T Consensus 62 ~~~~~l~~~d~vv~SPGi~~~~p~~~~a~~~~i~ 95 (468)
T PRK04690 62 ASAQRLAAFEVVVKSPGISPYRPEALAAAAQGTP 95 (468)
T ss_pred CCHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCC
T ss_conf 7855761488999899579868999999987994
No 125
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.76 E-value=4.9 Score=20.76 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHH
Q ss_conf 961898856686889999999968888-72899960688999999887
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLL 47 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~-~i~ivaINd~~~~~~~~~Ll 47 (333)
|+.|||+-|.|.+|..+++-+++.... .-+++ +.|. +.+.+..+.
T Consensus 1 M~kkI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~-~~~~-~~~~~~~~~ 46 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDL-NVSNLKNAS 46 (272)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE-EECC-CHHHHHHHH
T ss_conf 998699985679999999999978898967699-9697-999999999
No 126
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.22 E-value=3 Score=22.11 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=7.6
Q ss_pred EEEECCCCC--CCCEEEECC
Q ss_conf 354434887--862168326
Q gi|254780654|r 279 LVSVDFNHT--SYSSIFAAD 296 (333)
Q Consensus 279 lVS~D~ig~--~~s~i~D~~ 296 (333)
++..+++.. +.+.|+|.-
T Consensus 222 Vlt~~~l~~~~~~avIIDLA 241 (296)
T PRK08306 222 VLTKNVLSKMPPHALIIDLA 241 (296)
T ss_pred HCCHHHHHCCCCCCEEEEEC
T ss_conf 43999994189996999947
No 127
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.99 E-value=0.75 Score=26.05 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=55.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCC-CCCC-CCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530-0165-654211012
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTI-DVGL-GPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l-~in~-~~i~i~~~~ 80 (333)
-||.|-|.|=.|-.+...+...-=-.|.++- .|.-+..++-.-+-+.+--|+.+.+ .-...| .+|- -+|..+.++
T Consensus 28 s~VlivG~GGLG~~~a~~La~aGVG~i~lvD-~D~Ve~SNL~RQ~~~~~diG~~Ka~--~a~~~l~~iNp~v~I~~~~~~ 104 (209)
T PRK08644 28 AKVGIAGAGGLGSNIAVALARSGVGNLKLVD-FDVVEPSNLNRQQYFISQIGMFKVE--ALKENLLRINPFVKIEVHQVK 104 (209)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEE-CCEECCCCCCCCCCCHHHCCCCHHH--HHHHHHHHHCCCEEEEEEECC
T ss_conf 9689988878899999999993898189988-9990154110375678775975699--999998744898289997224
Q ss_pred -CCCCCC--CCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEC
Q ss_conf -333334--46563278606643332122001105842343303
Q gi|254780654|r 81 -DPQDLP--WGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 (333)
Q Consensus 81 -~p~~i~--W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSa 121 (333)
++++++ .+++|+|+|||--|.+|--+....-.-.++-+++|
T Consensus 105 l~~~n~~~l~~~~DiViDctDN~~tR~li~~~c~~~~~~plV~a 148 (209)
T PRK08644 105 IDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEKKGKKVVSA 148 (209)
T ss_pred CCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 89899999985799999999999999999999999779968999
No 128
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=79.61 E-value=5.3 Score=20.52 Aligned_cols=148 Identities=17% Similarity=0.258 Sum_probs=74.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 18988566-8688999999996888-872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 3 CKVAINGF-GRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGf-GRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|||+|-|- |+||-.+...+..+.. .++.++-++. +.+ +..+...--.+.....+...++....
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~--~~~-------------~a~g~a~Dl~~~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK--SLE-------------KLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCC--CCC-------------CCCEEEHHHHCCCCCCCCCCEEEECC
T ss_conf 989999999769999999998379987599960556--434-------------23112355450343368876798279
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHH-HC-----------------CCCEEEEECCCCCCCEEEEEECCCCCCCCC
Q ss_conf 333334465632786066433321220011-05-----------------842343303678873489840553212222
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLHL-SN-----------------GSQRVLVSAPCKGVKKTIVYGVNHQSLNKE 142 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~HL-~~-----------------GakkVIiSaP~kd~~~tiV~GvN~~~~~~~ 142 (333)
+.+++ +|.|+|+=+.|.-+.....+.-| .. .+.-+++|-|. |. .+.+. -....| +.
T Consensus 66 d~~~~--~daDivVitAG~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~p~~ivivvtNPv-Dv-~t~~~-~k~sg~-p~ 139 (309)
T cd05294 66 DLSDV--AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV-DV-MTYKA-LKESGF-DK 139 (309)
T ss_pred CHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-HH-HHHHH-HHHCCC-CH
T ss_conf 88996--899999987898899599878999989999999998764269984999768965-77-99999-996698-82
Q ss_pred CEEECCCCC-CHHHHHHHHHHHHHCCCHHHHHC
Q ss_conf 103305764-10234668887541210232210
Q gi|254780654|r 143 DKVVSNASC-TTNCLVPVVHVLDKMFGIEKGYM 174 (333)
Q Consensus 143 ~~IiS~aSC-Ttn~laPvlk~l~~~~gI~~g~~ 174 (333)
+++|..+.- .| +=+-+.|.+++|+....+
T Consensus 140 ~rviG~gt~LDs---~R~r~~la~~l~v~~~~V 169 (309)
T cd05294 140 NRVFGLGTHLDS---LRFKVAIAKHFNVHISEV 169 (309)
T ss_pred HCEEEECCHHHH---HHHHHHHHHHHCCCHHHC
T ss_conf 038871213877---899999999969496672
No 129
>KOG0068 consensus
Probab=79.35 E-value=1.4 Score=24.30 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=21.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 8988566868899999999688887289996068
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
.+|+-||||||+.|.+.+-. ....++.-.++
T Consensus 148 TLgvlG~GrIGseVA~r~k~---~gm~vI~~dpi 178 (406)
T KOG0068 148 TLGVLGLGRIGSEVAVRAKA---MGMHVIGYDPI 178 (406)
T ss_pred EEEEEECCCCHHHHHHHHHH---CCCEEEEECCC
T ss_conf 78885046211899999986---58548860687
No 130
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=79.20 E-value=1.6 Score=23.89 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=59.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHC-CCCCCCCCEE-----EEECCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688999999887514-4125567408-----9836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYD-SVHGRFPGEV-----KIIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yD-S~hG~~~~~v-----~~~~~~l~in~~~i~i 76 (333)
.||.|-|.|=+|-.++..+...---.+.++- .|.-+..++..-+-|+ +--|+.+.++ +..+..+.|.-...++
T Consensus 22 s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD-~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~~i 100 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVD-DDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC
T ss_conf 9789988778899999999983997589997-874556764221023786687895999999998548875303132100
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH-HCCCCEEEEECC
Q ss_conf 1012333334465632786066433321220011-058423433036
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHL-SNGSQRVLVSAP 122 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL-~~GakkVIiSaP 122 (333)
. +.+..++ .+++|+|+|||.-|.++--+.... +.+.. +|++-
T Consensus 101 ~-~~~~~~~-~~~~DlVid~~Dn~~~R~~ln~~~~~~~iP--~i~g~ 143 (228)
T cd00757 101 D-AENAEEL-IAGYDLVLDCTDNFATRYLINDACVKLGKP--LVSGA 143 (228)
T ss_pred C-HHHHHHH-HHCCCEEEECCCCHHHHHHHHHHHHHCCCC--EEEEE
T ss_conf 5-7569988-737989998779988999999999983998--89997
No 131
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.65 E-value=5.3 Score=20.51 Aligned_cols=162 Identities=17% Similarity=0.287 Sum_probs=78.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCC--CCCCCCC-CCC
Q ss_conf 1898856686889999999968888728999606889999998875144125567408983653001--6565421-101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDV--GLGPIQV-TSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~i--n~~~i~i-~~~ 79 (333)
|+||.-|+||.|+.+.|.+++. +.++|+- | -+.+.+..+-.+. .-|-.. -++.+.- --+.+-+ .-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~---ghdvV~y-D-~n~~av~~~~~~g-a~~a~s-----l~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG---GHDVVGY-D-VNQTAVEELKDEG-ATGAAS-----LDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CCCEEECCCHHHHHHHHHHHHC---CCEEEEE-C-CCHHHHHHHHHCC-CCCCCC-----HHHHHHHCCCCCEEEEECCC
T ss_conf 9011540005269999999838---9728997-3-8889999998657-754367-----99999746987479997337
Q ss_pred CCCCC-----C-CC-CCCCEEEEECCCCCCCCCCC---HHHHCCCCEEEE--ECCCCCCC--EEEEEECCCCCCCCCCEE
Q ss_conf 23333-----3-44-65632786066433321220---011058423433--03678873--489840553212222103
Q gi|254780654|r 80 RDPQD-----L-PW-GDVDVAMECTGFFVTQEKAS---LHLSNGSQRVLV--SAPCKGVK--KTIVYGVNHQSLNKEDKV 145 (333)
Q Consensus 80 ~~p~~-----i-~W-~~vDiViEcTG~f~~~~~~~---~HL~~GakkVIi--SaP~kd~~--~tiV~GvN~~~~~~~~~I 145 (333)
-+|.+ + |. ..=|+|||---. .=++..+ ..-+.|.+.+=+ |.-..+.. ..+..|=-++.++.-.+|
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS-~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pi 148 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNS-NYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPI 148 (300)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCEEEECCCHHHHHHHHHH
T ss_conf 773689999988536788889878863-2577899999887659717834677772255357238853868999998899
Q ss_pred ECCC--------CCCHHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 3057--------64102346688875412102322100113
Q gi|254780654|r 146 VSNA--------SCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178 (333)
Q Consensus 146 iS~a--------SCTtn~laPvlk~l~~~~gI~~g~~TTiH 178 (333)
+-.- -|--..--..+|.+|. |||.|+|.++-
T Consensus 149 f~~lA~ge~Gyl~~Gp~GsGHfvKMVHN--GIEYGmM~a~a 187 (300)
T COG1023 149 FKALAPGEDGYLYCGPSGSGHFVKMVHN--GIEYGMMQAIA 187 (300)
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHC--CHHHHHHHHHH
T ss_conf 9862768676300168876232899851--08999999999
No 132
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.06 E-value=2 Score=23.33 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=90.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCC-CCCCCEEEEECCCCCCCCCCCCC--CCC
Q ss_conf 189885668688999999996888872899960688999999887514412-55674089836530016565421--101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH-GRFPGEVKIIGDTIDVGLGPIQV--TSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~h-G~~~~~v~~~~~~l~in~~~i~i--~~~ 79 (333)
-+|.|-|.|-.|-.++..+...-=-.+.++- .|.-+..+|.--.-|+.-. |....++....+.|.-=+..+++ +.+
T Consensus 25 s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD-~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~ 103 (337)
T PRK12475 25 KHVLIIGAGALGAANAEALVRAGIGKLTIAD-RDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT 103 (337)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 9699997777789999999982898699984-998314467453002221215574889999999984499974475131
Q ss_pred -CCCCCCC--CCCCCEEEEECCCCCCCCCCCHHH-HCCCCEEEEECC-CCCCCEEEEEECC---CCCCCCCCEEECCCCC
Q ss_conf -2333334--465632786066433321220011-058423433036-7887348984055---3212222103305764
Q gi|254780654|r 80 -RDPQDLP--WGDVDVAMECTGFFVTQEKASLHL-SNGSQRVLVSAP-CKGVKKTIVYGVN---HQSLNKEDKVVSNASC 151 (333)
Q Consensus 80 -~~p~~i~--W~~vDiViEcTG~f~~~~~~~~HL-~~GakkVIiSaP-~kd~~~tiV~GvN---~~~~~~~~~IiS~aSC 151 (333)
-+++++. -+++|+|||||--|.++--....- +.+..-|-=++- ..+...++..|-- +--| ++ -.+.++|
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~~g~~G~~~~~~p~~tpCyrClf-~~--p~~~~tC 180 (337)
T PRK12475 104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQKYNIPWIYGGCVGSYGVTYTIIPGKTPCFRCLM-EH--PVGGATC 180 (337)
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCHHHCC-CC--CCCCCCC
T ss_conf 19979999998618899988889999999999999969998998870568899987799987341157-99--9989986
Q ss_pred CHHHHH-H------------HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 102346-6------------88875412102322100113453222355665
Q gi|254780654|r 152 TTNCLV-P------------VVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAG 190 (333)
Q Consensus 152 Ttn~la-P------------vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~ 190 (333)
.+..+. | .+|+|-..-....+.+.++-.|.++.+-++-.
T Consensus 181 ~~~GVlgp~~giigs~qa~EaiK~l~g~~~~l~~~ll~~D~~~~~~~~~~~~ 232 (337)
T PRK12475 181 DTAGIIQPAVQIVVAHQVAEALKILVEDFEALRETMLSFDIWNNQNMSIKVN 232 (337)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 4577663338899999999999998489975658689999777879999716
No 133
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.94 E-value=5.9 Score=20.20 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=23.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 61898856686889999999968888728999606
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
|-||.|-|+|+=|+.+.|.+.+. +.++.. .|
T Consensus 3 ~KkvlV~GlG~SG~s~a~~L~~~---g~~v~~-~D 33 (418)
T PRK00683 3 LQRVVVLGLGVTGKSVARFLAQK---GVYVIG-VD 33 (418)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC---CCEEEE-EC
T ss_conf 86699980888799999999978---298999-82
No 134
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=77.76 E-value=1.9 Score=23.39 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=54.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHC-CCCCCCCCEEEEECCCC-CCC-CCCCCCCCC
Q ss_conf 189885668688999999996888872899960688999999887514-41255674089836530-016-565421101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYD-SVHGRFPGEVKIIGDTI-DVG-LGPIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yD-S~hG~~~~~v~~~~~~l-~in-~~~i~i~~~ 79 (333)
-||.|-|.|-+|--+++.+....-..+.++= +|.-+..++..-+-|. +--|+.+.++ -.+.| .+| .-+|..+.+
T Consensus 2 skVlivG~GglG~~~~~~La~~Gvg~i~lvD-~D~ve~sNL~Rq~l~~~~diG~~Ka~~--~~~~l~~~np~~~i~~~~~ 78 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLARAGVGKLTLVD-FDTVELSNLNRQILFTESDIGKPKAEV--AKERLRAINPDVEVEAYPE 78 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCCCCEEECCHHHCCCEEHHH--HHHHHHHHCCCCEEEEEEC
T ss_conf 8899989888999999999993897499998-956763222722423364668810799--9999997789958999925
Q ss_pred C-CCCCC--CCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 2-33333--4465632786066433321220011
Q gi|254780654|r 80 R-DPQDL--PWGDVDVAMECTGFFVTQEKASLHL 110 (333)
Q Consensus 80 ~-~p~~i--~W~~vDiViEcTG~f~~~~~~~~HL 110 (333)
+ +++++ -+++.|+|++|+.-+.++-.+..+.
T Consensus 79 ~i~~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c 112 (134)
T pfam00899 79 RLTPENLEELLKGADLVVDALDNFAARYLLNDAC 112 (134)
T ss_pred CCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 6797787642644889999989999999999999
No 135
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=77.40 E-value=5.9 Score=20.20 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=29.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 898856686889999999968888728999606889999998875
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
||||=|.|.+|..+.+.+++.. .+++.+++. +++.+..+.+
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~g---~~~~~~~~r-~~~~~~~~~~ 41 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAAG---HEVIIANSR-NPEKAAALAE 41 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHCC---CCCEEEECC-CHHHHHHHHH
T ss_conf 9899970099999999999779---961278648-7899999999
No 136
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.39 E-value=6.1 Score=20.10 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=23.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 18988566868899999999688887289996068
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
-||.|-|+|+-|+.+.|.+.+. +.+|.. .|.
T Consensus 7 k~v~V~GlG~sG~s~~~~L~~~---G~~v~~-~D~ 37 (438)
T PRK03806 7 KNVVIIGLGLTGLSCVDFFLAR---GVTPRV-MDT 37 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEEE-EEC
T ss_conf 9899994578889999999978---996999-989
No 137
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.30 E-value=6.2 Score=20.08 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=51.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875144125567408983-653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII-GDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~-~~~l~in~~~i~i~~~~~ 81 (333)
||||+-|+|.+|..+++-++++....-++. +.+. +.+....|.+. |+ .+... ++.-.++...+-|..-+
T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~~~~~~~i~-v~~r-~~~~~~~l~~~---~~----~v~~~~~n~~~~~~~dvi~LaVK- 70 (255)
T PRK06476 1 MRIGFIGTGAITEAMVTGLLSSPADVSEII-VSPR-NAQIAARLAAR---FA----KVRIAKDNQAVVDRSDVVFLAVR- 70 (255)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEE-EECC-CHHHHHHHHHH---CC----CEEEECCHHHHHHHCCEEEEEEC-
T ss_conf 989998646999999999997889925088-9898-98999999987---69----55985788999851887888617-
Q ss_pred CC-------CCCCC-CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 33-------33446-5632786066433321220011058423433036
Q gi|254780654|r 82 PQ-------DLPWG-DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 (333)
Q Consensus 82 p~-------~i~W~-~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP 122 (333)
|. ++.+. +-=+|==+.|. +.++++.+|..++ +|+-.=|
T Consensus 71 P~~~~~vl~~l~~~~~~~vISi~AGi--~i~~l~~~l~~~~-~vvR~MP 116 (255)
T PRK06476 71 PQIAEEVLRALRFRPGQTVISVIAAT--TRAALLKWIGADV-KLVRAIP 116 (255)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCC--CHHHHHHHHCCCC-CEEEECC
T ss_conf 88899887762057897899973787--7999997618998-6488558
No 138
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=76.85 E-value=6.3 Score=20.00 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=50.1
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 98856-68688999999996888872899960688999999887514412556740898365300165654211012333
Q gi|254780654|r 5 VAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQ 83 (333)
Q Consensus 5 IgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~ 83 (333)
|.|-| -|.+||.+.|++++. +.+|.++---.+.+. +.-|+. . .+++. .-...||+
T Consensus 1 IlV~GatG~iG~~vv~~L~~~---g~~Vr~l~R~~~~~~-~~~l~~------~--gve~v------------~gD~~d~~ 56 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKA---GHPVRALVRDPKSEL-AKSLKA------A--GVELV------------EGDLDDHE 56 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHC---CCCEEEEECCCCHHH-HHHHHH------C--CCEEE------------EECCCCHH
T ss_conf 099896828999999999858---993899971873665-666641------7--98899------------90688878
Q ss_pred CCC--CCCCCEEEEECCCCCCCCC------CCHHHHCCCCEEEEEC
Q ss_conf 334--4656327860664333212------2001105842343303
Q gi|254780654|r 84 DLP--WGDVDVAMECTGFFVTQEK------ASLHLSNGSQRVLVSA 121 (333)
Q Consensus 84 ~i~--W~~vDiViEcTG~f~~~~~------~~~HL~~GakkVIiSa 121 (333)
.+. .+++|.|+-+++.+...+. +.+-.++|+|+++.|.
T Consensus 57 sl~~al~gvd~v~~~~~~~~~~~~~~~~~~~~AA~~aGVk~~V~ss 102 (232)
T pfam05368 57 SLVEALKGVDVVFSVTGFWLSKEIEDGKKLADAAKEAGVKHFIPSE 102 (232)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999967998899915887417799999999999973998345555
No 139
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=76.64 E-value=6.4 Score=19.97 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEE-EECCC--------CCCCCCCC
Q ss_conf 98856-6868899999999688887289996068899999988751441255674089-83653--------00165654
Q gi|254780654|r 5 VAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVK-IIGDT--------IDVGLGPI 74 (333)
Q Consensus 5 IgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~-~~~~~--------l~in~~~i 74 (333)
|.|-| -|-||++.+..+-.. +++|+|+++---.+.+.+..+.+ +|+.+.- ..+.. +.-....+
T Consensus 1 I~IlGsTGSIG~~tL~Vi~~~-~~~f~v~~Lsa~~N~~~L~~q~~------~f~p~~v~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T pfam02670 1 ITILGSTGSIGTQTLDVIRRN-PDRFEVVALSAGRNVELLAEQIK------EFKPKYVAVADEEAAEELKEALAGAGLKT 73 (129)
T ss_pred CEEECCCCHHHHHHHHHHHHC-CCCEEEEEEEECCCHHHHHHHHH------HCCCCEEEECCHHHHHHHHHHCCCCCCCC
T ss_conf 989767868899999999959-56718999983478999999999------73997999958999999998632478873
Q ss_pred CCCCCCC-CCC-CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE
Q ss_conf 2110123-333-344656327860664333212200110584234330
Q gi|254780654|r 75 QVTSIRD-PQD-LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 (333)
Q Consensus 75 ~i~~~~~-p~~-i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS 120 (333)
+++...+ ..+ +...++|+|+-+.=-|.--+-.-.-++.| |+|.++
T Consensus 74 ~i~~g~~~l~~~~~~~~~D~vi~AIsG~aGL~pt~~ai~~g-k~iaLA 120 (129)
T pfam02670 74 EVLAGEEGLCELAALPEADIVVNAIVGAAGLLPTLAAIKAG-KTIALA 120 (129)
T ss_pred EEEECHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC-CEEEEE
T ss_conf 79878899999970778899998156501399999999869-989998
No 140
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=76.00 E-value=6.7 Score=19.86 Aligned_cols=100 Identities=14% Similarity=0.249 Sum_probs=53.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068-89999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL-NSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~-~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
-|+.|-|.|-+||++++.+.+..-. ++.-.|-. ...+.++.-+ ++..+.+....+
T Consensus 13 ~~vlVIGaG~~~~~~~~~L~~~g~~--~i~v~nRt~~ka~~la~~~----------------------~~~~~~~~~~~~ 68 (134)
T pfam01488 13 KKVLLIGAGEMARLAAKHLLSKGAK--KITIANRTLEKAKELAEEF----------------------GGEEVEALPLDE 68 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCHHHHHHHHHHC----------------------CCCCEEEEECHH
T ss_conf 9899999609999999999975998--8999547578999999984----------------------997258985135
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCC-CCEEEE--ECCCCCCCEE
Q ss_conf 33334465632786066433321220011058-423433--0367887348
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNG-SQRVLV--SAPCKGVKKT 129 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~G-akkVIi--SaP~kd~~~t 129 (333)
..+. +.++|+||=||+.-.-.-. +.+++.. -+++|+ +-| .|.+|.
T Consensus 69 l~~~-l~~~DivI~aT~s~~~ii~-~~~~~~~~~~~~iiDLavP-rnvd~~ 116 (134)
T pfam01488 69 LEEL-LAEADIVISATSAPTPIIT-KEMVEEALKGLLFVDIAVP-RDIEPE 116 (134)
T ss_pred HHHH-HHHCCEEEEECCCCCCEEC-HHHHHHCCCCEEEEEECCC-CCCCHH
T ss_conf 4413-6319999992599973648-9999744398599983478-886654
No 141
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=75.68 E-value=2.2 Score=23.06 Aligned_cols=97 Identities=27% Similarity=0.377 Sum_probs=64.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 61898856686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
+.+++|-|.|++||.+++.---. +.+|+|+|+=|. |++. .+. .++|.+ ++.-.+
T Consensus 84 ~~~v~lvGaGnLG~AL~~y~gf~-~~gf~Iva~FD~-dp~k--------------------iG~--~i~gi~--V~~i~~ 137 (211)
T PRK05472 84 TTNVALVGAGNLGRALLNYNGFK-KRGFKIVAAFDV-DPEK--------------------VGT--KIGGIP--VYHIDE 137 (211)
T ss_pred CCEEEEECCCHHHHHHHHCCCHH-HCCCEEEEEECC-CHHH--------------------CCC--EECCEE--EECHHH
T ss_conf 75089988877999998487623-189789999748-9788--------------------598--838838--734999
Q ss_pred CCC-CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 333-3446563278606643332122001105842343303678
Q gi|254780654|r 82 PQD-LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK 124 (333)
Q Consensus 82 p~~-i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k 124 (333)
.++ +.=.++++.|-|+-.-...+-+....++|+|-++-=||..
T Consensus 138 L~~~i~~~~i~iaIiaVP~~~AQ~vad~Lv~aGIk~IlNFap~~ 181 (211)
T PRK05472 138 LEEVIKENDIEIAILTVPAEAAQEVADRLVEAGIKGILNFAPVR 181 (211)
T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 99999981993899955768899999999981983999768724
No 142
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.40 E-value=6.9 Score=19.76 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=77.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEE-EECCCCCCCCCCCCCCCC
Q ss_conf 9618988566868899999999688887289996068899999988751441255674089-836530016565421101
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVK-IIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~-~~~~~l~in~~~i~i~~~ 79 (333)
|.=||+|-|+|-||-.+.+++-+. ....+|+++.- +.+++.+.++..-+-..+...-+ ..+-.|+|=-.++..+.+
T Consensus 5 ~f~~I~IiGlGLIGgSlA~alk~~-~~~~~I~g~d~--~~~~l~~A~~~g~id~~~~~~~e~~~~~DlIilatPv~~~~~ 81 (307)
T PRK07502 5 LFDRVALIGLGLIGSSLARAIRRQ-GLAGEIVGAAR--SAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGA 81 (307)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHC-CCCCEEEEEEC--CHHHHHHHHHCCCCCHHCCCHHHHHCCCCEEEEECCHHHHHH
T ss_conf 456689992787999999999854-99857999849--999999999869975112777664045897999178999999
Q ss_pred CCCCCC-CC-CCCCEEEEECCCCCCC-CCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECC-CCCCHHH
Q ss_conf 233333-44-6563278606643332-122001105842343303678873489840553212222103305-7641023
Q gi|254780654|r 80 RDPQDL-PW-GDVDVAMECTGFFVTQ-EKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSN-ASCTTNC 155 (333)
Q Consensus 80 ~~p~~i-~W-~~vDiViEcTG~f~~~-~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~-aSCTtn~ 155 (333)
- ..++ +. +.=-+|.|..+.-... +.++.++..+.. -|-+.|..+-...=+-....+.|+...-|++- ..+.-.+
T Consensus 82 v-l~~l~~~l~~~~ivTDvgSvK~~I~~~~~~~~~~~~~-FVg~HPmAGsE~sG~~~A~~~LF~~~~~iltp~~~~~~~~ 159 (307)
T PRK07502 82 V-AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVH-FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred H-HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCC-EECCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 9-9999855589968996632118999999985677783-6726887678875510100147438708996799999999
Q ss_pred HHHH
Q ss_conf 4668
Q gi|254780654|r 156 LVPV 159 (333)
Q Consensus 156 laPv 159 (333)
+.-+
T Consensus 160 ~~~v 163 (307)
T PRK07502 160 VARL 163 (307)
T ss_pred HHHH
T ss_conf 9999
No 143
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.39 E-value=7.3 Score=19.59 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=29.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 6189885668688999999996888-8728999606889999998875
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
|+|||+-|.|.+|..+++-+++... ..-++.. .+..+.+.+..+-+
T Consensus 3 mm~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v-~~r~~~~~~~~l~~ 49 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITV-SNRSNETRLQELHQ 49 (279)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEE-ECCCCHHHHHHHHH
T ss_conf 788999876899999999999787999757999-78984999999999
No 144
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=74.06 E-value=4.4 Score=21.02 Aligned_cols=81 Identities=26% Similarity=0.358 Sum_probs=42.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC------HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 898856686889999999968888728999606889------99999887514412556740898365300165654211
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS------IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVT 77 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~------~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~ 77 (333)
||||-|-|.+|+.+.-.+... +++|+.. |+.. .+.+...|....-.|++... .-+.+ -.++++
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~---G~~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~---~~~~~---~~~i~~- 69 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARA---GLEVVLV-DISEEALEKARARIEKSLARLVEKGRLTEE---DVDAV---LARISF- 69 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCEEEEE-ECCHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHH---HHHCCC-
T ss_conf 989999788999999999967---9939999-799899999999999989999972567567---69999---852410-
Q ss_pred CCCCCCCCCCCCCCEEEEECC
Q ss_conf 012333334465632786066
Q gi|254780654|r 78 SIRDPQDLPWGDVDVAMECTG 98 (333)
Q Consensus 78 ~~~~p~~i~W~~vDiViEcTG 98 (333)
..+.+++ .++|+|+||--
T Consensus 70 -~~~l~~~--~~adlViEav~ 87 (180)
T pfam02737 70 -TTDLADA--VDADLVIEAVP 87 (180)
T ss_pred -CCCHHHH--CCCCEEEECCC
T ss_conf -5889997--58999999251
No 145
>PRK08223 hypothetical protein; Validated
Probab=73.61 E-value=3 Score=22.16 Aligned_cols=126 Identities=22% Similarity=0.233 Sum_probs=62.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHHCCCCCCCCCEEEEECCC-CCCCCC-CCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988-75144125567408983653-001656-5421101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHL-LRYDSVHGRFPGEVKIIGDT-IDVGLG-PIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~L-l~yDS~hG~~~~~v~~~~~~-l~in~~-~i~i~~~ 79 (333)
-+|.|-|.|=+|-.++-.+...-=-.|.++ =.|.-++.++--- +-..+.-|+.+.++ -.+. ..||-. +|..+.+
T Consensus 28 s~VlVvG~GGlGs~~a~~LAraGVG~i~lv-D~D~velSNLnRQi~~~~~diG~~Kvev--a~e~l~~INP~v~V~~~~~ 104 (287)
T PRK08223 28 SRVAIAGLGGVGGVHLLTLARLGIGKFNIA-DFDVFELVNSNRQYGAMMSSNGRPKVEV--MREIALDINPELEIRAFPE 104 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCHHHCCCHHHCCCCHHHH--HHHHHHHHCCCCEEEEECC
T ss_conf 968999367557999999998289759997-4998463440222344743449858999--9999998698987999587
Q ss_pred C-CCCCCCC--CCCCEEEEECCCCC--CCCCCCHHHH-CCCCEEEEECCCCCCCEEEEE
Q ss_conf 2-3333344--65632786066433--3212200110-584234330367887348984
Q gi|254780654|r 80 R-DPQDLPW--GDVDVAMECTGFFV--TQEKASLHLS-NGSQRVLVSAPCKGVKKTIVY 132 (333)
Q Consensus 80 ~-~p~~i~W--~~vDiViEcTG~f~--~~~~~~~HL~-~GakkVIiSaP~kd~~~tiV~ 132 (333)
. ++++++. +++|+|+|||-.|. ++-.+..... .| +-++-.||-.-.-...||
T Consensus 105 ~lt~~N~~~~l~~~DvVvDg~DnF~~~tR~ll~~ac~~~g-iP~v~~a~l~f~gq~~vF 162 (287)
T PRK08223 105 GIGKENLDTFLDGVDVYVDGLDFFVFDIRRLLFREAQARG-IPALTAAPLGFSTAWLVF 162 (287)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEECCCCCCCEEEEE
T ss_conf 8998999999867999997966788318999999999859-984983154103069998
No 146
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.16 E-value=7.6 Score=19.49 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=44.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 96189885668688999999996888872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|+|||+|-|.|-||-.+--.+.+ ...++.++.- +.+.+..+.+.. .+....+.- ...+++.. .
T Consensus 1 m~MkI~IiGaGAiG~~~a~~L~~-ag~dV~lv~r----~~~~~~~~~~~g--------~~~~~~~~~---~~~~~v~~-~ 63 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLAR-AGLPVRLILR----DRQRLAAYQQAG--------GLTLVEQGQ---ASLYAIPA-E 63 (305)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEEE----CHHHHHHHHHCC--------CEEEEECCC---EEEEECCC-C
T ss_conf 99889998823999999999984-8997399994----789999999789--------989986895---57874046-5
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 333334465632786066433321220
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKAS 107 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~ 107 (333)
.++.. ..+|+||=|+-.|.+.+.++
T Consensus 64 ~~~~~--~~~D~vivavK~~~~~~a~~ 88 (305)
T PRK05708 64 TADAP--EPIHRLLVACKAYDAEPAVA 88 (305)
T ss_pred CCCCC--CCCCEEEEEECCCCHHHHHH
T ss_conf 76657--88778999804256899999
No 147
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.57 E-value=3 Score=22.09 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCE-EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 961-8988566868899999999688887289996068
Q gi|254780654|r 1 MVC-KVAINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 1 M~i-kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
|.| ||+|-|-|.+|+.+...+... +++|+. -|+
T Consensus 1 M~Ik~VaViGaG~MG~gIA~~~a~~---G~~V~l-~D~ 34 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFART---GYDVTI-VDV 34 (291)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCCEEE-EEC
T ss_conf 9958899988768899999999958---998899-989
No 148
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.54 E-value=8.1 Score=19.31 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 6788999987410
Q gi|254780654|r 253 IDEINATMKYFAE 265 (333)
Q Consensus 253 ~e~in~~~~~as~ 265 (333)
.|+++++|+.+.+
T Consensus 326 L~~~~eAf~~~~~ 338 (349)
T TIGR03201 326 LDQIEHVFAAAHH 338 (349)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999977
No 149
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.29 E-value=6.2 Score=20.07 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=81.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC-CCE-EEE-ECC-CC--CC-CCCCCC
Q ss_conf 189885668688999999996888872899960688999999887514412556-740-898-365-30--01-656542
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRF-PGE-VKI-IGD-TI--DV-GLGPIQ 75 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~-~~~-v~~-~~~-~l--~i-n~~~i~ 75 (333)
||||+-|+|+.|....+.+++. +++|+.-| . +.+....+.+. -....- ..+ +.. +.. .+ .+ ++..+.
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~~---G~~V~v~d-~-~~~~~~~~~~~-g~~~~~s~~e~~~~l~~~~vI~~~vp~g~~v~ 74 (298)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED---GHEVVGYD-V-NQEAVDVAGKL-GITARHSLEELVSKLEAPRAIWVMVPAGEVTE 74 (298)
T ss_pred CEEEEECHHHHHHHHHHHHHHC---CCEEEEEC-C-CHHHHHHHHHC-CCEECCCHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 9799983467689999999977---99489984-9-98999999986-99542899999973789988999768945599
Q ss_pred -CCCCCCCCCCCC-CCCCEEEEECCCCCC-CCCCCHHHH-CCCCEEEEECCCCC------CCEEEEEECCCCCCCCCCEE
Q ss_conf -110123333344-656327860664333-212200110-58423433036788------73489840553212222103
Q gi|254780654|r 76 -VTSIRDPQDLPW-GDVDVAMECTGFFVT-QEKASLHLS-NGSQRVLVSAPCKG------VKKTIVYGVNHQSLNKEDKV 145 (333)
Q Consensus 76 -i~~~~~p~~i~W-~~vDiViEcTG~f~~-~~~~~~HL~-~GakkVIiSaP~kd------~~~tiV~GvN~~~~~~~~~I 145 (333)
++.+- .+- ..=|++|||+-.+-. ..+....|+ .|.. .+-||..+ .-+++..|-+.+.|+.-.+|
T Consensus 75 ~vi~~l----~~~L~~g~iiID~sts~~~~t~~~~~~l~~~gi~--flDapVSGG~~GA~~GlsiMvGG~~~~~~~~~pi 148 (298)
T PRK12490 75 SVLKDL----YPLLSPGDIVIDGGNSRYKDDLRRAEELAERGIH--YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPV 148 (298)
T ss_pred HHHHHH----HHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC--EECCCCCCCHHHHHCCCEEECCCCHHHHHHHHHH
T ss_conf 999968----8526999888528878999999999999975990--3055357887899669868518999999999999
Q ss_pred ECCCC-C------CHHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 30576-4------102346688875412102322100113
Q gi|254780654|r 146 VSNAS-C------TTNCLVPVVHVLDKMFGIEKGYMTTVH 178 (333)
Q Consensus 146 iS~aS-C------Ttn~laPvlk~l~~~~gI~~g~~TTiH 178 (333)
+..=+ + --..--..+|.+|. +|+.+.|-.+-
T Consensus 149 l~~ia~~~~~~~~G~~GsGh~vKmvnN--~Iey~~mq~ia 186 (298)
T PRK12490 149 FDALAPENGYVHAGPVGSGHFLKMVHN--GIEYGMMQAYA 186 (298)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 999667458572089875388999999--99999999999
No 150
>KOG2250 consensus
Probab=72.10 E-value=8.3 Score=19.24 Aligned_cols=31 Identities=32% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1898856686889999999968888728999606
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
.|+.|-|||-+|-...+.+.+ ++-.+++|.|
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~---~G~kvvavsD 282 (514)
T KOG2250 252 KRVVIQGFGNVGGHAAKKLSE---KGAKVVAVSD 282 (514)
T ss_pred EEEEEECCCCHHHHHHHHHHH---CCCEEEEEEC
T ss_conf 289985787158899999986---6997999976
No 151
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.47 E-value=4.5 Score=20.98 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=63.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHCCCCCCCCCEEE-----EECCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688999999-88751441255674089-----836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMA-HLLRYDSVHGRFPGEVK-----IIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~-~Ll~yDS~hG~~~~~v~-----~~~~~l~in~~~i~i 76 (333)
-+|.|-|.|=.|--+...+...-=-.+.++- .|.-++.++- +++-.++.-|+.+.++- ..+-.+.|.-.+. +
T Consensus 12 s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD-~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~~~-~ 89 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLID-FDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE-F 89 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEHH-H
T ss_conf 9789988863689999999980997599971-9990454444330165633699728999999998799988998625-1
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE
Q ss_conf 10123333344656327860664333212200110584234330
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS 120 (333)
+.+.+.+++--.++|+|+||+--+.+|-.+-.+...--+.+|.|
T Consensus 90 ~~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~iplIss 133 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 59989999845477778534424877999999999829908998
No 152
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.07 E-value=4.1 Score=21.21 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEEEEECCCC-CCC-CCCCCCCCCC
Q ss_conf 898856686889999999968888728999606889999998875144-1255674089836530-016-5654211012
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS-VHGRFPGEVKIIGDTI-DVG-LGPIQVTSIR 80 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS-~hG~~~~~v~~~~~~l-~in-~~~i~i~~~~ 80 (333)
||.|-|.|-+|--+++.+.-..-..+.++ =.|..+..+|..-+-|.. -=|+.+.++- ...+ .+| +-+|.-++++
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg~i~ii-D~D~Ie~SNLnRQfLf~~~dvGk~Ka~vA--a~~l~~~Np~~~I~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVI-DMDTIDVSNLNRQFLFRPKDIGRPKSEVA--AEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCEECCCCCCHHHCCCCCCCCCCHHHHH--HHHHHHHCCCCEEEEEECC
T ss_conf 98999488879999999998399869997-59900567701302446442688229999--9999987899779998055
Q ss_pred -CCCC----CCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECC--CCCCCEEEEEECC
Q ss_conf -3333----34465632786066433321220011058423433-036--7887348984055
Q gi|254780654|r 81 -DPQD----LPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAP--CKGVKKTIVYGVN 135 (333)
Q Consensus 81 -~p~~----i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP--~kd~~~tiV~GvN 135 (333)
.+++ --|++.|+|++|+--+.+|.-...-.-.- .|-+| ++. .++-..++++|..
T Consensus 78 v~~e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~-~~PLIegGt~G~~Gqv~~IiP~~T 139 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL-IVPLIESGTEGFKGNAQVILPGMT 139 (234)
T ss_pred CCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHH-CCCEEEECCCCCEEEEEEEECCCC
T ss_conf 68621057988852999998857888999999999980-998597202461479999838997
No 153
>PRK09117 consensus
Probab=70.04 E-value=4.4 Score=21.04 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1898856686889999999968888728999
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVA 33 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~iva 33 (333)
-||++-|-|.+|+.+...+... +++|+.
T Consensus 3 ~~VaViGaG~mG~~iA~~~a~~---G~~V~l 30 (282)
T PRK09117 3 QTVGIIGAGTMGNGIAQACAVA---GLDVVM 30 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCEEE
T ss_conf 7799989779999999999967---996899
No 154
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.68 E-value=9.4 Score=18.90 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=27.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHH
Q ss_conf 189885668688999999996888872899960688-999999887
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLL 47 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll 47 (333)
-||.|-|+|+=|+.+.|.+.+. +.+|. +.|.. .++.+..|-
T Consensus 8 k~vlV~GlG~sG~a~a~~L~~~---G~~V~-~~D~~~~~~~~~~l~ 49 (501)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH---GCRLR-VADTREAPPNLAALQ 49 (501)
T ss_pred CEEEEEEECHHHHHHHHHHHHC---CCEEE-EEECCCCCCCHHHHH
T ss_conf 8399983368899999999978---98499-998999986199998
No 155
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=69.34 E-value=1.8 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC
Q ss_conf 632786066433321220011058423433-0367887
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV 126 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~ 126 (333)
+++=||==|-.||.+.+...|+.|+.|||+ |+..++.
T Consensus 72 ~~~~vQvGGGIRs~e~v~~ll~~Gv~RVI~GT~A~~~~ 109 (241)
T TIGR00007 72 LGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENP 109 (241)
T ss_pred CCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCH
T ss_conf 18517981751688999999973985799733221086
No 156
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=69.22 E-value=5.8 Score=20.27 Aligned_cols=70 Identities=24% Similarity=0.289 Sum_probs=44.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCC-CCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 563278606643332122001105842343303678873489840553212-222103305764102346688875
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSL-NKEDKVVSNASCTTNCLVPVVHVL 163 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~-~~~~~IiS~aSCTtn~laPvlk~l 163 (333)
++|+|+||+|.-...+.+-..++.|-+-|++..|..... + .+...+ -.+.+|...-..+-.....+++.+
T Consensus 59 g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~-~----~~~~~~~~k~i~i~Gs~~~~~~~~~~~l~~i 129 (131)
T pfam00107 59 GVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPV-P----FPLRDLLLKELTILGSLGGGREEFEEALELL 129 (131)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC-C----CCHHHHHHCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 764988668866679999875359978999946789974-0----5389998698599998148999999999997
No 157
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.57 E-value=9.9 Score=18.75 Aligned_cols=220 Identities=20% Similarity=0.282 Sum_probs=117.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEE---EEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289---996068899999988751441255674089836530016565421101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRI---VAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~i---vaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~ 79 (333)
.|++|-|-|-||-.++--++-. ..-+|. |.|.--+|--..+.-|--.++|--. +-+.+.
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~-g~~le~~~mvgidp~sdglaraarlgv~tt~egv-----------------~~ll~~ 66 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH-GQHLEMAVMVGIDPQSDGLARAARLGVATTHEGV-----------------IGLLNM 66 (310)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEECCCCCCCHHHHHHHCCCCCHHHHH-----------------HHHHHC
T ss_conf 2599973686208899999854-7865630487348885077888861985224478-----------------999839
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHH
Q ss_conf 23333344656327860664333212200110584234330367887348984055321222210330576410234668
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPV 159 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~IiS~aSCTtn~laPv 159 (333)
| ++.|+|+|+|.|..+.-+..+.++-++|.+-+ --.+.-.-|-+|.-+|-+.-- +.+-+-.-.|-..+-.|+
T Consensus 67 --p---~~~di~lvfdatsa~~h~~~a~~~ae~gi~~i--dltpaaigp~vvp~~n~~eh~-~a~nvnmvtcggqatipi 138 (310)
T COG4569 67 --P---EFADIDLVFDATSAGAHVKNAAALAEAGIRLI--DLTPAAIGPYVVPVVNLEEHV-DALNVNMVTCGGQATIPI 138 (310)
T ss_pred --C---CCCCCCEEEECCCCCHHHHHHHHHHHCCCCEE--ECCHHCCCCEECCCCCHHHHC-CCCCCCEEEECCCCCEEE
T ss_conf --9---98776558852432034440577886498423--056000487212654657745-888752586668200011
Q ss_pred HHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC---CCC
Q ss_conf 88754121023221001134532223556654530001123656464531124567777620178710434312---335
Q gi|254780654|r 160 VHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRV---PTP 236 (333)
Q Consensus 160 lk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RV---Pt~ 236 (333)
+.....-..+..+-+ -+--.+.. -+|.. | .||=--+-..+++++.+= |--.|.++-+ --|
T Consensus 139 v~avsrvv~v~yaei---vasias~s--agpgt-----r---anideftettsr~ie~vg----gaargkaiiilnpaep 201 (310)
T COG4569 139 VAAVSRVVRVHYAEI---VASIASKS--AGPGT-----R---ANIDEFTETTSRAIEVVG----GAARGKAIIILNPAEP 201 (310)
T ss_pred HHHHHHHEECHHHHH---HHHHHHCC--CCCCC-----C---CCHHHHHHHHHHHHHHHC----CCCCCCEEEEECCCCC
T ss_conf 142136300019999---89886415--69975-----4---446777566677888622----3114736999678899
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 31011234332012206788999987410
Q gi|254780654|r 237 NVSMVDLKCVTSRDVNIDEINATMKYFAE 265 (333)
Q Consensus 237 ~vS~vDlt~~l~k~~t~e~in~~~~~as~ 265 (333)
---+-|-+|++..+.+.++|..-+.+.-+
T Consensus 202 plmmrdtvf~~~~~a~~~~i~asi~~mv~ 230 (310)
T COG4569 202 PLMMRDTVFVLSDEASQDDIEASINEMVE 230 (310)
T ss_pred CEEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 71352027995064678899978999999
No 158
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=68.46 E-value=5.2 Score=20.59 Aligned_cols=185 Identities=17% Similarity=0.218 Sum_probs=90.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHC--CCCCCCCCEEEEECCCCCCCCCCCCC--CC
Q ss_conf 189885668688999999996888872899960688999999887514--41255674089836530016565421--10
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYD--SVHGRFPGEVKIIGDTIDVGLGPIQV--TS 78 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yD--S~hG~~~~~v~~~~~~l~in~~~i~i--~~ 78 (333)
-+|.|-|.|-.|-.++..+..--=-.+.+|- .|.-+..+|.--.-|+ -+...++ ++..-...|.-=+..+++ +.
T Consensus 25 a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD-~D~Ve~SNL~RQ~L~~e~Dig~~~p-Ka~aA~~~L~~iNp~v~I~~~~ 102 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVD-RDYVEWSNLQRQQLYTESDVKNNLP-KAVAAKKRLEEINSEVRVEAIV 102 (339)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCEECCCCCCCCCCCCHHHHCCCCH-HHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9789987777779999999984898299980-9992466788650656213322637-7999999998349986058760
Q ss_pred -CCCCCCCC-C-CCCCEEEEECCCCCCCCCCCHHH-HCCCCEEEEECC-CCCCCEEEEEECC--CCCCCCCCEEECCCCC
Q ss_conf -12333334-4-65632786066433321220011-058423433036-7887348984055--3212222103305764
Q gi|254780654|r 79 -IRDPQDLP-W-GDVDVAMECTGFFVTQEKASLHL-SNGSQRVLVSAP-CKGVKKTIVYGVN--HQSLNKEDKVVSNASC 151 (333)
Q Consensus 79 -~~~p~~i~-W-~~vDiViEcTG~f~~~~~~~~HL-~~GakkVIiSaP-~kd~~~tiV~GvN--~~~~~~~~~IiS~aSC 151 (333)
.-+++++. + +++|+|+|||--|.+|--....- +.+..-|-=++- ..+...++..|-. -.-+-++.. ....+|
T Consensus 103 ~~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~~g~~G~~~~~~p~~~pC~rCl~p~~p-~~~~tC 181 (339)
T PRK07688 103 QDVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYSIPWIYGACVGSYGLSYTIIPGKTPCLSCLLQSIP-LGGATC 181 (339)
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf 0399899999985188999878899999999999999599989998844688999538999970541689999-889984
Q ss_pred CHHHHH-H------------HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 102346-6------------88875412102322100113453222355665
Q gi|254780654|r 152 TTNCLV-P------------VVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAG 190 (333)
Q Consensus 152 Ttn~la-P------------vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~ 190 (333)
.+..+- | .+|+|-..-.-..+.+.++-.|.++.+-++-.
T Consensus 182 ~~~GVlgp~vgiigs~Qa~EaiK~l~G~~~~l~~~ll~~D~~~~~~~~i~~~ 233 (339)
T PRK07688 182 DTAGIISPAVQLVASHQVTEALKLLVGDYESLRDGLVSFDVWKNEYSCMNVQ 233 (339)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 2366364507899999999999998589975658689999667889999657
No 159
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.34 E-value=10 Score=18.72 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=23.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 1898856686889999999968888728999606
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 36 (333)
-||.|-|+|+=|+.+.|.+.+. +.++...-|
T Consensus 18 ~kvlV~GlG~SG~s~a~~L~~~---G~~v~~~D~ 48 (476)
T PRK00141 18 GRVLVAGAGVSGLGIAKMLSEL---GCDVVVADD 48 (476)
T ss_pred CCEEEEEECHHHHHHHHHHHHC---CCEEEEEEC
T ss_conf 9889992278899999999978---997999989
No 160
>PRK07680 late competence protein ComER; Validated
Probab=68.06 E-value=10 Score=18.68 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=28.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHH
Q ss_conf 1898856686889999999968888-72899960688999999887
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLL 47 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~-~i~ivaINd~~~~~~~~~Ll 47 (333)
||||+-|.|.+|..+++-+++.... .-++... +. +.+....+-
T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~-~r-~~~~~~~l~ 44 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESRAVKPSCLTIT-NR-TPAKAYHIK 44 (273)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEE-CC-CHHHHHHHH
T ss_conf 989998769999999999997799894569998-89-989999999
No 161
>PRK06223 malate dehydrogenase; Reviewed
Probab=67.75 E-value=10 Score=18.64 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=70.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888-8728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|||+|-|-|.+|-.+.-.+....- .++-++-||+- -.+-.+. |=-|+. ..-+...++....+
T Consensus 1 mKI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~-~a~g~a~----Dl~~~~------------~~~~~~~~i~~~~d 63 (312)
T PRK06223 1 MKISIIGAGNVGATLAHLLALKELGKDVVLFDIPEG-IPQGKAL----DIAESS------------AVDGFDAKITGTND 63 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHH----HHHCCC------------CCCCCCCEEEECCC
T ss_conf 979999969899999999985799874899769997-3367988----876514------------33688847983788
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHH-H-----------------HCCCCEEEEECCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 3333446563278606643332122001-1-----------------058423433036788734898405532122221
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLH-L-----------------SNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKED 143 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~H-L-----------------~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~ 143 (333)
.+++ ++.|+|+=+.|.-+....-+.- | .-.+.-+++|-|. |.--.+++ ....| +.+
T Consensus 64 ~~~~--~daDiVVitag~~rk~g~tR~dll~~N~~I~k~i~~~i~~~~p~~iilvvsNPv-Dv~t~~~~--k~sg~-p~~ 137 (312)
T PRK06223 64 YADI--AGSDVVIITAGVPRKPGMSRDDLLGINAKIMKDVGEGIKKYAPDAIVIVITNPV-DAMTYVAL--KESGF-PKE 137 (312)
T ss_pred HHHH--CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHH--HHCCC-CHH
T ss_conf 8995--799999990677899998868999987899999999998409981899936936-89999999--86099-988
Q ss_pred EEECCCCC-CHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 03305764-10234668887541210232210011345
Q gi|254780654|r 144 KVVSNASC-TTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 144 ~IiS~aSC-Ttn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
++|+.+.. .|+- +-..|.+++++..-. ||+|
T Consensus 138 rviG~gT~LDs~R---~r~~ia~~l~v~~~~---V~~~ 169 (312)
T PRK06223 138 RVIGMGGVLDSAR---FRYFLAEEFNVSVKD---VTAF 169 (312)
T ss_pred HHCCCCHHHHHHH---HHHHHHHHHCCCHHH---EEEE
T ss_conf 8114311587899---999999996989657---4788
No 162
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.51 E-value=3.1 Score=22.03 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=31.9
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC
Q ss_conf 632786066433321220011058423433-0367887
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV 126 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~ 126 (333)
+++-++.-|--++.+.++..|+.||.||++ |+..+|.
T Consensus 75 ~~~~iqvGGGIRs~e~i~~~l~~G~~rViigT~a~~~~ 112 (234)
T PRK13587 75 TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDT 112 (234)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 79867984654759999999976899999888130286
No 163
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=67.11 E-value=11 Score=18.56 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=6.4
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 45311245677776201
Q gi|254780654|r 206 PTSTGAAKAVELVLPNL 222 (333)
Q Consensus 206 Pt~Tgaa~ai~~vlP~l 222 (333)
--.+|...++...+.-+
T Consensus 240 ie~~G~~~~~~~al~~~ 256 (343)
T PRK09880 240 FEVSGHPSSVNTCLEVT 256 (343)
T ss_pred EEECCCHHHHHHHHHHC
T ss_conf 99219999999999737
No 164
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=67.05 E-value=6.5 Score=19.92 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=70.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888-728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~-~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
+||++-|-|+||..+...++...-. ++.+.-|+.- -++-.+.=| .+.....+..+++....+
T Consensus 1 ~KV~viGaG~VG~s~a~~l~~~~~~~el~LiDi~~~-~~~G~a~DL----------------~~~~~~~~~~~~i~~~~~ 63 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEE-KAEGVALDL----------------SHAAAPLGSDVKITGDGD 63 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCHHCCH----------------HHCCHHCCCCEEEECCCC
T ss_conf 939998987478999999962555665999974666-564011025----------------334000267618834787
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHH---------------HHCC---CCEEEEECCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 3333446563278606643332122001---------------1058---423433036788734898405532122221
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLH---------------LSNG---SQRVLVSAPCKGVKKTIVYGVNHQSLNKED 143 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~H---------------L~~G---akkVIiSaP~kd~~~tiV~GvN~~~~~~~~ 143 (333)
--+.++.|+|+=+-|.-+..-.-+.- +... +.-+++|-|. |..-.+.+ ....+ |..
T Consensus 64 --y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv-D~~ty~~~--k~sg~-p~~ 137 (313)
T COG0039 64 --YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV-DILTYIAM--KFSGF-PKN 137 (313)
T ss_pred --HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH-HHHHHHHH--HHCCC-CCC
T ss_conf --0231699899996888899899779999865999999999999659972999945947-88999999--96399-844
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 0330576410234668887541210232210011345
Q gi|254780654|r 144 KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 144 ~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
++|..+ |+=--+-+-..|.++|++ ...-||+|
T Consensus 138 rvig~g--t~LDs~R~~~~lae~~~v---~~~~v~~~ 169 (313)
T COG0039 138 RVIGSG--TVLDSARFRTFLAEKLGV---SPKDVHAY 169 (313)
T ss_pred CEECCC--CHHHHHHHHHHHHHHHCC---CHHHCEEE
T ss_conf 465354--468899999999998598---96672156
No 165
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=66.70 E-value=5.3 Score=20.52 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=55.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHC-CCCCCCCCEE-----EEECCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688999999887514-4125567408-----9836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYD-SVHGRFPGEV-----KIIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yD-S~hG~~~~~v-----~~~~~~l~in~~~i~i 76 (333)
-+|.|-|.|=+|-.++..+...-=-.|.+|- .|.-+..++.--+-|+ +--|+.+.++ +.-+..+.|....-++
T Consensus 33 s~VlivG~GGlG~~~~~~La~aGvg~i~lvD-~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~~i 111 (245)
T PRK05690 33 ARVLVVGLGGLGCAAAQYLAAAGVGTLTLVD-FDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINARL 111 (245)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHCC
T ss_conf 9789987777789999999985996599996-886788867888645987789887999999999758875226333144
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 1012333334465632786066433321220011
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHL 110 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL 110 (333)
.. .+..++ -+++|+|+|||--|.++-.+....
T Consensus 112 ~~-~n~~~l-i~~~DlViD~~Dn~~~R~~ln~~c 143 (245)
T PRK05690 112 DD-DELAAL-IAAHDLVLDCTDNVATRNQLNAAC 143 (245)
T ss_pred CH-HHHHHH-HHCCCEEEECCCCHHHHHHHHHHH
T ss_conf 88-899887-507888998789999999999999
No 166
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.22 E-value=8 Score=19.36 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=85.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEE-----EEECCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875144-125567408-----9836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS-VHGRFPGEV-----KIIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS-~hG~~~~~v-----~~~~~~l~in~~~i~i 76 (333)
-+|.|-|-|=+|--++..+...-=-.+.++ =.|.-++.++.--+-|.. --|+.+.+. +..+..+.|.-...++
T Consensus 29 s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~-D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l 107 (355)
T PRK05597 29 AKVSVIGAGGLGSPALLYLAGAGVGHITII-DDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRL 107 (355)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHC
T ss_conf 968998777668999999998499759997-2999261213377565412179797999999999878997427533215
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCC-CCEEEEEECCC----CCCCCCCE-EECCCC
Q ss_conf 1012333334465632786066433321220011058423433036788-73489840553----21222210-330576
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKG-VKKTIVYGVNH----QSLNKEDK-VVSNAS 150 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd-~~~tiV~GvN~----~~~~~~~~-IiS~aS 150 (333)
.. .+..++ -+++|+|+|||--|.+|--....... .+|-+|+|-.-. .-...||.-.+ ..+=|+.. --+..+
T Consensus 108 ~~-~na~~l-i~~~DvVvD~tDn~~tR~lind~c~~-~~~PlV~ga~~~~~Gq~~vf~~~~~pcyrclfP~~p~~~~~~~ 184 (355)
T PRK05597 108 DW-SNALSE-LADADVILDGSDNFDTRHVASWAAAR-LGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPS 184 (355)
T ss_pred CH-HHHHHH-HHCCCEEEECCCCHHHHHHHHHHHHH-HCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77-789977-52887898767888899999999998-6998799652446788863469999871557899997213467
Q ss_pred CCHHHHH-------------HHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 4102346-------------688875412102322100113453222
Q gi|254780654|r 151 CTTNCLV-------------PVVHVLDKMFGIEKGYMTTVHSYTGDQ 184 (333)
Q Consensus 151 CTtn~la-------------Pvlk~l~~~~gI~~g~~TTiH~~t~~Q 184 (333)
|.+..+- -.+|+|-..-....|.+.++-+.+.+.
T Consensus 185 C~~~GVLG~~~G~iGslqA~EaiKil~g~g~~l~gkll~~D~l~~~~ 231 (355)
T PRK05597 185 CSQAGVLGPVVGVVGSAMAMEALKLITGVGRPLIGKLGYYSSLDGTW 231 (355)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCE
T ss_conf 14328764416899999999999999578988777189999877843
No 167
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=62.98 E-value=5.8 Score=20.28 Aligned_cols=181 Identities=14% Similarity=0.233 Sum_probs=84.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEEEEECCCCC-CCCC-CCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875144-12556740898365300-1656-5421101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS-VHGRFPGEVKIIGDTID-VGLG-PIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS-~hG~~~~~v~~~~~~l~-in~~-~i~i~~~ 79 (333)
-+|.|-|-|=.|--++-.+..--=-.+.++ =.|.-+..++..-+-|+. --|+.+ ++.-...|. +|-. +|..+.+
T Consensus 42 a~VlvvG~GGLG~p~~~yLaaaGvG~i~iv-D~D~Ve~sNL~RQil~~~~diG~~K--~~~A~~~l~~lNp~i~i~~~~~ 118 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLI-DDDTVDVSNIHRQILFGASDVGRPK--VEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCHHHHHCCCHHHCCCCH--HHHHHHHHHHHCCCCCEEEHHH
T ss_conf 978998887578999999998289748987-3898260210555426976669757--9999999998789971573566
Q ss_pred C-CCCCCC--CCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCC-CCEEEEE--ECCCC-----CCCCCCE-EEC
Q ss_conf 2-333334--465632786066433321220011058423433036788-7348984--05532-----1222210-330
Q gi|254780654|r 80 R-DPQDLP--WGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKG-VKKTIVY--GVNHQ-----SLNKEDK-VVS 147 (333)
Q Consensus 80 ~-~p~~i~--W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd-~~~tiV~--GvN~~-----~~~~~~~-IiS 147 (333)
+ ++++.. -+++|+|+|||--|.+|--....... .+|-+|++-.-. .-...|| |-.+. .+-|+.. -=+
T Consensus 119 ~l~~~n~~~li~~~DvVvD~tDNf~tRylindaC~~-~~~PlV~ga~~~~eGQvsvf~~~~~~~~pcyrclfP~~p~~~~ 197 (370)
T PRK05600 119 RLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEI-TGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDS 197 (370)
T ss_pred HCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH-HCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 469999998763687899778887999999999998-4997698453262889999816888888630026788997433
Q ss_pred CCCCCHHHHH-H------------HHHHHHHCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 5764102346-6------------88875412102322100113453222355
Q gi|254780654|r 148 NASCTTNCLV-P------------VVHVLDKMFGIEKGYMTTVHSYTGDQHVL 187 (333)
Q Consensus 148 ~aSCTtn~la-P------------vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~ 187 (333)
..+|.+..+. | .+|+|-..=....|.+-++.+.+.+.+.+
T Consensus 198 ~p~C~~~GVLG~~~GvIGslqA~EaiKli~g~g~~L~G~Ll~~D~l~~~~~~~ 250 (370)
T PRK05600 198 IPDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSF 250 (370)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEE
T ss_conf 35762146062279999999999999999579988767389999887806899
No 168
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=62.89 E-value=9.1 Score=18.98 Aligned_cols=85 Identities=18% Similarity=0.324 Sum_probs=44.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECC---CCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688999999887514412556740898365---30016565421101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGD---TIDVGLGPIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~---~l~in~~~i~i~~~ 79 (333)
||+-..|.|.|||-+.=.++... +++++.+ |.. +.+...|+-+ |.+ ++...++ ...|++ ++-.+.
T Consensus 1 mKavhFGAGNigRGFI~~ll~~~--g~~v~Fv-dvn--~~li~~Ln~~---~~Y--~v~~~g~~~~~~~V~~--v~ai~~ 68 (381)
T PRK02318 1 MKALHFGAGNIGRGFIGKLLADN--GFEVTFA-DVN--QEIIDALNKR---KSY--QVIVVGEGEQVETVSN--VSAINS 68 (381)
T ss_pred CCEEEECCCHHHHHHHHHHHHHC--CCEEEEE-ECC--HHHHHHHHCC---CCE--EEEEECCCCCEEEEEE--EEEECC
T ss_conf 94699787422126689999977--9769999-587--8899998606---985--8999338862699977--899868
Q ss_pred CCCCC-CC-CCCCCEEEEECCC
Q ss_conf 23333-34-4656327860664
Q gi|254780654|r 80 RDPQD-LP-WGDVDVAMECTGF 99 (333)
Q Consensus 80 ~~p~~-i~-W~~vDiViEcTG~ 99 (333)
.+.++ +. +.++|+|--|.|.
T Consensus 69 ~~~~~v~~~i~~aDiiTt~vGp 90 (381)
T PRK02318 69 KDEEAVIELIAEADLITTAVGP 90 (381)
T ss_pred CCHHHHHHHHHCCCEEEECCCH
T ss_conf 9989999998458989964582
No 169
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.38 E-value=7.3 Score=19.59 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=43.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC------HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889------9999988751441255674089836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS------IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~------~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i 76 (333)
-||+|-|-|.+|+.+.-.+... +++|+.. |+.. .+.+...+...--.|++.. .....--.++++
T Consensus 3 ~kV~ViGaG~mG~~IA~~~a~~---G~~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~~i~~ 72 (284)
T PRK07819 3 QRVGVVGAGQMGSGIAEVCARA---GVDVLVF-ETTEEAATAGRNRIEKSLERAVSAGKLTE------RERDAALARLTF 72 (284)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEE-ECCHHHHHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHHCCCC
T ss_conf 6799989778999999999957---9908999-79889999999999999999987278987------999999963706
Q ss_pred CCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 10123333344656327860664
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGF 99 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~ 99 (333)
. .+.++ ..++|+||||---
T Consensus 73 ~--~dl~~--~~~adlViEav~E 91 (284)
T PRK07819 73 T--TDLED--LADRQLVIEAVVE 91 (284)
T ss_pred C--CCHHH--HCCCCEEEECCCC
T ss_conf 6--89999--7659999990738
No 170
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=60.92 E-value=11 Score=18.36 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=30.6
Q ss_pred EE-EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 18-988566868899999999688887289996068899999988751441255
Q gi|254780654|r 3 CK-VAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGR 55 (333)
Q Consensus 3 ik-IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~ 55 (333)
|| +|+=|+||.|-.+.|++.++. -+||.=.- +.++...|=--|-+-|.
T Consensus 1 MktlglIGLGrMG~ni~~rl~~rg---h~~vgYd~--~q~av~~~kG~d~~~gv 49 (341)
T TIGR00872 1 MKTLGLIGLGRMGANIAKRLADRG---HEVVGYDR--DQAAVEELKGEDRAEGV 49 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEECC--CHHHHHHHHCCCCCCCC
T ss_conf 952443133467899999985279---46998538--87999997201134300
No 171
>PRK08328 hypothetical protein; Provisional
Probab=58.79 E-value=5.2 Score=20.56 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=55.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH-CCCCCCCCCEEEEE------CCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751-44125567408983------653001656542
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY-DSVHGRFPGEVKII------GDTIDVGLGPIQ 75 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y-DS~hG~~~~~v~~~------~~~l~in~~~i~ 75 (333)
-||.|-|.|=+|-.+.-.+...---.+.+|= .|.-+..++...+-| ..--|+.+...... +..+.|.-..-+
T Consensus 28 s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD-~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~ 106 (230)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGTVLLID-EQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGR 106 (230)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHH
T ss_conf 9789988787899999999984898689874-878751563255403087747710399999999975995057526644
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH-CCCC
Q ss_conf 110123333344656327860664333212200110-5842
Q gi|254780654|r 76 VTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLS-NGSQ 115 (333)
Q Consensus 76 i~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~-~Gak 115 (333)
+.. .+..++ .+++|+|+|||-.|.++--+..+.. .+.+
T Consensus 107 i~~-~n~~~l-l~~~DlViD~tDn~~tr~~ln~~c~~~~iP 145 (230)
T PRK08328 107 LTE-ENIDEV-LKGVDVIVDCLDNFETRYLLDDYAHKKGIP 145 (230)
T ss_pred HHH-HHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 237-779862-005989999889989999999999983997
No 172
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.74 E-value=15 Score=17.58 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=41.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH-HHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999-98875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETM-AHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~-~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
.||+|-|.|-||-.+--.+.+ ...++.+ +-. ...+.+ .+=|+.+|.||.+ .+ ++++. ..+
T Consensus 6 ~kI~IiGaGAiG~~~a~~L~~-aG~~V~l--i~r-~~~~ai~~~Gl~i~~~~g~~-----------~~--~~~~~--~~~ 66 (313)
T PRK06249 6 PRIAIIGTGAIGGFYGAMLAR-AGFDVHF--LLR-SDYEAVRENGLQVDSVHGDF-----------HL--PQVQA--YRS 66 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEEE--EEC-CHHHHHHHCCEEEEECCCCE-----------EE--CCCEE--ECC
T ss_conf 889999914999999999996-6995699--967-55999986885999669828-----------97--68402--369
Q ss_pred CCCCCCCCCCEEEEECCCCCCC
Q ss_conf 3333446563278606643332
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQ 103 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~ 103 (333)
|+++ ..+|+||=|+=.|.+.
T Consensus 67 ~~~~--~~~D~viv~vKs~~~~ 86 (313)
T PRK06249 67 AEDM--PPCDWVLVGLKTTANA 86 (313)
T ss_pred HHHC--CCCCEEEEECCCCCHH
T ss_conf 7783--9965899953667789
No 173
>PRK07411 hypothetical protein; Validated
Probab=58.31 E-value=5.7 Score=20.29 Aligned_cols=180 Identities=16% Similarity=0.056 Sum_probs=81.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEE-----EEECCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875144-125567408-----9836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS-VHGRFPGEV-----KIIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS-~hG~~~~~v-----~~~~~~l~in~~~i~i 76 (333)
-+|.|-|-|=.|--++-.+..----.|.++- .|.-+..++.--+-|+. --|+.+.+. +.-+-.+.|.-...++
T Consensus 39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD-~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l 117 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVD-FDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL 117 (390)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHC
T ss_conf 9789988872379999999983897599974-899462347854366620079718999999999868986421034325
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCC-CCEEEEEECCC----CCCCCCCE-EECCCC
Q ss_conf 1012333334465632786066433321220011058423433036788-73489840553----21222210-330576
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKG-VKKTIVYGVNH----QSLNKEDK-VVSNAS 150 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd-~~~tiV~GvN~----~~~~~~~~-IiS~aS 150 (333)
..+...+-+ .++|+|+|||--|.+|--...... -.+|-+|++-... .-...||-.++ ..+-|+.. --+..+
T Consensus 118 ~~~na~~li--~~~DvvvD~tDNf~tRylindac~-~~~~PlV~ga~~~~~Gqv~vf~~~~~pcyrclfp~~p~~~~~~~ 194 (390)
T PRK07411 118 SSENALDIL--APYDVVVDGTDNFPTRYLVNDACV-LLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPS 194 (390)
T ss_pred CHHHHHHHH--CCCCEEEECCCCHHHHHHHHHHHH-HHCCCEEEEECCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 552488742--288689967888899999899999-96998799764777899998658999962221688886355687
Q ss_pred CCHHHH-HH------------HHHHHHHCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 410234-66------------8887541210232210011345322235
Q gi|254780654|r 151 CTTNCL-VP------------VVHVLDKMFGIEKGYMTTVHSYTGDQHV 186 (333)
Q Consensus 151 CTtn~l-aP------------vlk~l~~~~gI~~g~~TTiH~~t~~Q~l 186 (333)
|....+ .| .+|+|-..=....|.|..+.+.+++.+.
T Consensus 195 C~~~GVLG~~~GviG~lqA~EaiKii~g~g~~l~gkll~~D~l~~~~~~ 243 (390)
T PRK07411 195 CAEGGVLGILPGIIGVIQATETVKIILGAGNTLSGRLLLYNALDMKFRE 243 (390)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEE
T ss_conf 0323865007889999999999999957998787727999988883589
No 174
>PRK09601 translation-associated GTPase; Reviewed
Probab=57.90 E-value=10 Score=18.67 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=32.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC------------CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 96189885668688999999996888------------8728999606889999998875
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRR------------DDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~------------~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
|.||+||-|+-..|+.-|..++.... |++-+|.+-|. ..+.++.+.+
T Consensus 1 m~mkiGivGlPnvGKSTlFnalT~~~~~~~nyPf~Ti~pn~g~v~VpD~-r~~~l~~~~~ 59 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDP-RLDKLAEIVK 59 (364)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCH-HHHHHHHHHC
T ss_conf 9824888779999889999999679986458998887880068857854-5899987628
No 175
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=57.55 E-value=16 Score=17.45 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=21.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 18988566868899999999688887289996
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 34 (333)
|||+|-|+|.+|-.+.-.+.+ .+.+|+.+
T Consensus 1 MkI~ViGlGyVGl~~a~~la~---~G~~V~g~ 29 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLAE---IGHDVVGV 29 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 979998978748999999994---89939999
No 176
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=56.72 E-value=16 Score=17.36 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=81.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCC-CCCE-EEEECC--CC--CC-CCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255-6740-898365--30--01-656542
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGR-FPGE-VKIIGD--TI--DV-GLGPIQ 75 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~-~~~~-v~~~~~--~l--~i-n~~~i~ 75 (333)
||||+-|+|..|....+.+++. ++++..-| . +.+.+..+.+.-- .+. -..+ +...+. .+ .+ ++..+.
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~~---G~~V~v~d-r-~~~~~~~~~~~ga-~~~~s~~e~~~~~d~prvI~l~lp~~~~Vd 74 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG---GHEVVGYD-R-NPEAVEALAAEGA-TGAASLEELVAKLPAPRVVWLMVPAGEITD 74 (301)
T ss_pred CEEEEECHHHHHHHHHHHHHHC---CCEEEEEC-C-CHHHHHHHHHCCC-EECCCHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 9799983458799999999968---99079976-9-9999999998599-432999999970788877999817970389
Q ss_pred -CCCCCCCCCCCC-CCCCEEEEEC-CCCCCCCCCCHHHH-CCCCEEEEECCCCC------CCEEEEEECCCCCCCCCCEE
Q ss_conf -110123333344-6563278606-64333212200110-58423433036788------73489840553212222103
Q gi|254780654|r 76 -VTSIRDPQDLPW-GDVDVAMECT-GFFVTQEKASLHLS-NGSQRVLVSAPCKG------VKKTIVYGVNHQSLNKEDKV 145 (333)
Q Consensus 76 -i~~~~~p~~i~W-~~vDiViEcT-G~f~~~~~~~~HL~-~GakkVIiSaP~kd------~~~tiV~GvN~~~~~~~~~I 145 (333)
+..+ -++. ..=|++|||+ -.|.+..+....|+ .|+. .+-||..+ .-+++..|-..+.|+.-.+|
T Consensus 75 ~Vi~~----l~~~l~~g~iiID~sts~~~~t~~~a~~l~~~gi~--flDapVSGG~~gA~~GlsiMvGG~~~~~e~~~Pi 148 (301)
T PRK09599 75 STIDE----LAPLLEAGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPI 148 (301)
T ss_pred HHHHH----HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC--EECCCCCCCHHHHHCCCEEEECCCHHHHHHHHHH
T ss_conf 99999----99627899888708999838899999999985994--5447667887788558613306989999998999
Q ss_pred ECCCCCCH---------HHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 30576410---------2346688875412102322100113
Q gi|254780654|r 146 VSNASCTT---------NCLVPVVHVLDKMFGIEKGYMTTVH 178 (333)
Q Consensus 146 iS~aSCTt---------n~laPvlk~l~~~~gI~~g~~TTiH 178 (333)
+..=+... ..--..+|.+|. ||+.|.|..|-
T Consensus 149 l~aia~~~~~~~~~~G~~GaGh~vKmVhN--gIey~~mq~ia 188 (301)
T PRK09599 149 FKALAPRAEDGYLHAGPVGAGHFVKMVHN--GIEYGMMQAYA 188 (301)
T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 99983345778045789882389999999--99999999999
No 177
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=56.63 E-value=4.8 Score=20.78 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCCCCCCCEEECCCCCCHHHH
Q ss_conf 5632786066433321220011058423433-0367887-----------348984055321222210330576410234
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQSLNKEDKVVSNASCTTNCL 156 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~~~~~~~IiS~aSCTtn~l 156 (333)
.+.+-+..-|--++.+.++..|+.||.||++ |+..++. ...+|.++.-...+....+...+.....-+
T Consensus 73 ~~~vpiqvGGGIrs~e~~~~ll~~GadkViigS~a~~np~~i~~~~~~fG~q~Iv~~iD~~~~~~~~~v~~~~~~~~~~~ 152 (252)
T PRK13597 73 RVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGL 152 (252)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCCEEECCC
T ss_conf 26982898477130899999985698779832666749378999998749965299998886189741675387275697
Q ss_pred HHH--HHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 668--887541210232210011345322235566545--300----011236564645311245677776201787104
Q gi|254780654|r 157 VPV--VHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLY----RSRAAAISMVPTSTGAAKAVELVLPNLKGKLDG 228 (333)
Q Consensus 157 aPv--lk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~R----r~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g 228 (333)
-|+ ++-+. .+|+.+=.+|-|.- ||... |+. -.+.....+|- .|.+..+..+.--++-.+.|
T Consensus 153 ~~~d~~~~~~-~~G~geil~tdI~r--------DGt~~G~d~~l~~~i~~~~~~pvIa--sGGv~s~~dl~~l~~~g~~g 221 (252)
T PRK13597 153 HAVEWAVKGV-ELGAGEILLTSMDR--------DGTKEGYDLRLTRMVAEAVGVPVIA--SGGAGRMEHFLEAFQAGAEA 221 (252)
T ss_pred CHHHHHHHHH-HHCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHCCCCE
T ss_conf 6999999999-64899999975737--------6844476959999998507998999--78989999999998789969
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 3431233531011234332012206788999987
Q gi|254780654|r 229 SSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 229 ~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
.+. =....+...+.+++.+.+++
T Consensus 222 vi~-----------G~al~~~~~s~~e~k~~L~~ 244 (252)
T PRK13597 222 ALA-----------ASVFHFGEIPIPELKRYLAE 244 (252)
T ss_pred EEE-----------HHHHHCCCCCHHHHHHHHHH
T ss_conf 987-----------12767799999999999998
No 178
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=56.37 E-value=5.9 Score=20.23 Aligned_cols=177 Identities=14% Similarity=0.114 Sum_probs=81.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEE-----EEECCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875144-125567408-----9836530016565421
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS-VHGRFPGEV-----KIIGDTIDVGLGPIQV 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS-~hG~~~~~v-----~~~~~~l~in~~~i~i 76 (333)
-+|.|-|-|=.|--++-.+...-=-.+.++ =.|.-+..++.--+-|+. --|+.+.+. +..+..+.|.-...++
T Consensus 43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~iv-D~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v~v~~~~~~l 121 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIV-EFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRL 121 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC
T ss_conf 978998787578999999998289759998-7899674557720056843358707999999999878985312113137
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH-HCCCCEEEEECCCCC-CCEEEEEECCC--C---CCC---CCCE-E
Q ss_conf 1012333334465632786066433321220011-058423433036788-73489840553--2---122---2210-3
Q gi|254780654|r 77 TSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHL-SNGSQRVLVSAPCKG-VKKTIVYGVNH--Q---SLN---KEDK-V 145 (333)
Q Consensus 77 ~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL-~~GakkVIiSaP~kd-~~~tiV~GvN~--~---~~~---~~~~-I 145 (333)
..+ +..++ -+++|+|||||--|.+|--..... .. +|-+|++-.-. .-...||..+. . -|. |+.. -
T Consensus 122 ~~~-n~~~l-i~~~DvViD~tDN~~tR~lindac~~~--~~PlV~ga~~~~~GQv~vf~~~~~~~~~pcyrClfP~~p~~ 197 (392)
T PRK07878 122 EPS-NAVDL-FAQYDLILDGTDNFATRYLVNDAAVLA--GKPYVWGSIYRFEGQASVFWEDAPDGLGPNYRDLYPEPPPP 197 (392)
T ss_pred CHH-HHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHH--CCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 888-98764-317768986689989999999999996--99879976057589999985478899998422057899963
Q ss_pred ECCCCCCHHHH-HH------------HHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 30576410234-66------------88875412102322100113453222
Q gi|254780654|r 146 VSNASCTTNCL-VP------------VVHVLDKMFGIEKGYMTTVHSYTGDQ 184 (333)
Q Consensus 146 iS~aSCTtn~l-aP------------vlk~l~~~~gI~~g~~TTiH~~t~~Q 184 (333)
-...+|.+..+ .| .+|+|-..-....|.+.++-+.+.+.
T Consensus 198 ~~~~~C~~~GVlG~~~GviG~~qA~EaiK~i~g~g~~l~gkll~~D~l~~~~ 249 (392)
T PRK07878 198 GMVPSCAEGGVLGVLCASIASVMGTEAIKLITGIGEPLLGRLMVYDALEMTY 249 (392)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCE
T ss_conf 4568720048464337888899999999999579988878489999888966
No 179
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=56.33 E-value=16 Score=17.32 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=46.9
Q ss_pred EEEECCCHHHHH-HHHHHHHCCCCCEEE-EEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 988566868899-999999688887289-996068899999988751441255674089836530016565421101233
Q gi|254780654|r 5 VAINGFGRIGRC-ILRAAVESRRDDVRI-VAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 5 IgINGfGRIGR~-v~R~~~~~~~~~i~i-vaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
.-|.||===||. +++.+++..+.+.++ |-+||++..+.=+-+++...+ .-++..+++++-..+.=-...-+..
T Consensus 3 ~iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll~~~~~-----~v~el~~GciCc~~~~d~~~~l~~l 77 (174)
T pfam02492 3 TVLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELLRETGA-----EIVELNNGCICCTIREDLSMVLEAL 77 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCC-----EEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 99934887889999999998444898479999336530207999870696-----1899748866454333699999999
Q ss_pred CCCCCCCCC-EEEEECCCCC
Q ss_conf 333446563-2786066433
Q gi|254780654|r 83 QDLPWGDVD-VAMECTGFFV 101 (333)
Q Consensus 83 ~~i~W~~vD-iViEcTG~f~ 101 (333)
.+.+-.+.| ++||+||...
T Consensus 78 ~~~~~~~~d~iiIE~sGla~ 97 (174)
T pfam02492 78 LELKLPRLDLLFIETTGLAC 97 (174)
T ss_pred HHCCCCCCCEEEEECCCCCC
T ss_conf 85578999999995876677
No 180
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=55.99 E-value=17 Score=17.29 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=43.0
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|||+|-| -|+.|..++.-++.+ +-+++||-- +++. +... ..+.+-.+.| | +
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R---GHeVTAivR--n~~K-----------------~~~~-~~~~i~q~Di--f---d 52 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR---GHEVTAIVR--NASK-----------------LAAR-QGVTILQKDI--F---D 52 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC---CCEEEEEEE--CHHH-----------------CCCC-CCCEEECCCC--C---C
T ss_conf 90789953745679999999867---980489980--7676-----------------6522-3530200022--2---7
Q ss_pred CCC--CCCCCCCEEEEECCCCC
Q ss_conf 333--34465632786066433
Q gi|254780654|r 82 PQD--LPWGDVDVAMECTGFFV 101 (333)
Q Consensus 82 p~~--i~W~~vDiViEcTG~f~ 101 (333)
|+. -+..+.|+||.+-|...
T Consensus 53 ~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 53 LTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
T ss_conf 4566766358766997215788
No 181
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1); InterPro: IPR004591 All proteins in this family for which functions are known are part of a multiprotein complex made up of homologs of RPA1, RPA2 and RPA3 that bind single-stranded DNA and function in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian virus 40 origin of replication. This family is Replication factor-a protein 1 (RPA1); GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus.
Probab=55.87 E-value=2 Score=23.28 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=4.6
Q ss_pred CCEEEEEEEEC
Q ss_conf 97799999838
Q gi|254780654|r 303 QNLLRVLVWYD 313 (333)
Q Consensus 303 ~~~~Ki~~WYD 313 (333)
|..+.+.+|=|
T Consensus 387 G~~v~~TLWGd 397 (671)
T TIGR00617 387 GKSVRVTLWGD 397 (671)
T ss_pred CCEEEEEECCH
T ss_conf 98899983242
No 182
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=54.57 E-value=17 Score=17.14 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHH-HCCCCCCCCCEEEEECCCCCCC------C
Q ss_conf 961898856686889999999968888728999606889--999998875-1441255674089836530016------5
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS--IETMAHLLR-YDSVHGRFPGEVKIIGDTIDVG------L 71 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~~~Ll~-yDS~hG~~~~~v~~~~~~l~in------~ 71 (333)
|..||+|-|-|-||+.+.-..+.. +++|+.. |+.+ .+.+...+. ......++...-......|.+- =
T Consensus 1 MIkkVAVIGAGvMGsGwAa~FA~a---G~~V~L~-Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV 76 (489)
T PRK07531 1 MIMKAACIGGGVIGGGWAARFLLN---GWDVAVF-DPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAV 76 (489)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEE-ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHH
T ss_conf 976799987188689999999957---9969999-488789999999999999987753203556467768638899997
Q ss_pred CCCCCCCCCCCCCCCCC-----C------CCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 65421101233333446-----5------63278606643332122001105842343303678
Q gi|254780654|r 72 GPIQVTSIRDPQDLPWG-----D------VDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCK 124 (333)
Q Consensus 72 ~~i~i~~~~~p~~i~W~-----~------vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~k 124 (333)
...-+.+|.-|++++.+ + -|.+|=++---......+..+. .-.|+|+..|..
T Consensus 77 ~dADlVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~S~l~~~~~-~peR~iv~HpfN 139 (489)
T PRK07531 77 AGADWIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKPSELQEGMT-HPERIFVAHPFN 139 (489)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC-CCCEEEEECCCC
T ss_conf 479999987856699999999999976799838985366588999986558-955068843468
No 183
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=54.18 E-value=18 Score=17.10 Aligned_cols=100 Identities=24% Similarity=0.366 Sum_probs=52.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 89885668688999999996888872899960688999999887514412556740898365300165654211012333
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQ 83 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~ 83 (333)
.+++.|.|-+|-.+.--+..-. . -.|+||- + +.+.+..=.++--+|.-.+.+.. .+- ....
T Consensus 188 tvaV~GlGgVGlaaI~gA~~ag-A-~~IiAvD-~-~~~Kl~~A~~fGAT~~vn~~~~~-------------~vv--~~i~ 248 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAG-A-GRIIAVD-I-NPEKLELAKKFGATHFVNPKEVD-------------DVV--EAIV 248 (366)
T ss_pred EEEEEECCHHHHHHHHHHHHCC-C-CEEEEEE-C-CHHHHHHHHHCCCCEEECCCCHH-------------HHH--HHHH
T ss_conf 4899904276699999898748-8-5499993-7-77899999863982465540025-------------489--9999
Q ss_pred CCCCC-CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC
Q ss_conf 33446-56327860664333212200110584234330367
Q gi|254780654|r 84 DLPWG-DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC 123 (333)
Q Consensus 84 ~i~W~-~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~ 123 (333)
++ |+ ++|+++||+|.......+-.-+..+=+-|++-.|.
T Consensus 249 ~~-T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 249 EL-TDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HH-CCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 86-27887789992599899999999874378189995279
No 184
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=54.15 E-value=18 Score=17.10 Aligned_cols=83 Identities=28% Similarity=0.283 Sum_probs=43.1
Q ss_pred EEEEEECCC-HHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 189885668-688999999996888-872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 3 CKVAINGFG-RIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGfG-RIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|||+|-|-| ++|..+.-.+..+.- .++-++-+|+ .-.+-.+.=|+ |... ...... +....
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~-~~a~g~alDl~----~~~~------------~~~~~~-~~~~~ 62 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINK-DKAEGVAMDLS----HGST------------FLSVPG-IVGGD 62 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHH----CCCC------------CCCCCE-EECCC
T ss_conf 989998987789999999997479663478850577-64117999986----1443------------478876-97488
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 3333344656327860664333212
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEK 105 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~ 105 (333)
+.+++ ++.|+|+=+.|..+...+
T Consensus 63 ~~~~~--~daDiVVitaG~~~k~g~ 85 (142)
T pfam00056 63 DYEAL--KDADVVVITAGVPRKPGM 85 (142)
T ss_pred CHHHH--CCCCEEEEECCCCCCCCC
T ss_conf 38883--789999981577789998
No 185
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=53.48 E-value=18 Score=17.03 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=36.2
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 61898856-686889999999968888728999606889999998875
Q gi|254780654|r 2 VCKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 2 ~ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
|-||+|-| -|-||.+.+..+-.. +.+|+|+++.--.+.+.+....+
T Consensus 1 mk~i~IlGsTGSIG~~tL~Vi~~~-~~~f~v~~lsa~~n~~~L~~q~~ 47 (379)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRH-PDRFRVVALSAGSNVELLAEQIR 47 (379)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHH
T ss_conf 978999856958889999999958-68758999992897999999999
No 186
>PRK09602 translation-associated GTPase; Reviewed
Probab=52.59 E-value=14 Score=17.74 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 9618988566868899999999688
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESR 25 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~ 25 (333)
|++|+||-|+=-.|+.-|..++-+.
T Consensus 1 M~lk~GIVGLPNvGKSTlFnaLT~~ 25 (396)
T PRK09602 1 MMIQIGLVGKPNVGKSTFFSAATLA 25 (396)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9834888889999889999999779
No 187
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=52.44 E-value=19 Score=16.92 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=73.7
Q ss_pred CCCCHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCC-CCCEEECCCCCCHHHHHHHHHHHHH-CCCHHHHHCCCCCCCC
Q ss_conf 1220011058423433036788734898405532122-2210330576410234668887541-2102322100113453
Q gi|254780654|r 104 EKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLN-KEDKVVSNASCTTNCLVPVVHVLDK-MFGIEKGYMTTVHSYT 181 (333)
Q Consensus 104 ~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~-~~~~IiS~aSCTtn~laPvlk~l~~-~~gI~~g~~TTiH~~t 181 (333)
++++.-.++|+|=|++++- |=..|. .+-.= +++-||=+|+-|++ -=||+.=-++|.||--
T Consensus 189 ~E~~~Lv~~G~kEi~L~Gq------------nv~~YgG~D~~~------~~~~La~LL~~l~~ki~G~~RIR~~~~hP~~ 250 (455)
T TIGR00089 189 EEVKELVSKGVKEITLLGQ------------NVNAYGGKDLEG------KTNSLADLLRELSKKIDGIERIRFTSSHPDD 250 (455)
T ss_pred HHHHHHHHCCCEEEEEEEE------------EECCCCCCCCCC------CCCCHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9999998469809999988------------525624778888------9764799999984005970268860467032
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCCCEEEEEECCCCCCHHHHHHHH-HHCCCCHHHHHH
Q ss_conf 2223556654530001123656464531124567--7776201787104343123353101123433-201220678899
Q gi|254780654|r 182 GDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAV--ELVLPNLKGKLDGSSIRVPTPNVSMVDLKCV-TSRDVNIDEINA 258 (333)
Q Consensus 182 ~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai--~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~-l~k~~t~e~in~ 258 (333)
=+--+ -.+.... ++|.| .++.|++.|| |-.|. +.+.-|.|+..+
T Consensus 251 ~~d~l----------------------i~~~~~~~~~~v~~---------~lHlPvQSGS--d~iLK~M~R~Y~~e~~~~ 297 (455)
T TIGR00089 251 VTDDL----------------------IELIAENKDPKVCK---------HLHLPVQSGS--DRILKRMNRKYTREEYLE 297 (455)
T ss_pred CCHHH----------------------HHHHHHCCCCCCCC---------EECCCEECCC--HHHHHCCCCCCCHHHHHH
T ss_conf 68789----------------------99998507885352---------0221266188--699970378988899999
Q ss_pred HHHHHH
Q ss_conf 998741
Q gi|254780654|r 259 TMKYFA 264 (333)
Q Consensus 259 ~~~~as 264 (333)
.+++.-
T Consensus 298 ~~~k~r 303 (455)
T TIGR00089 298 IVEKLR 303 (455)
T ss_pred HHHHHH
T ss_conf 999999
No 188
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=52.22 E-value=19 Score=16.90 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=70.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 98856686889999999968888728999606889--9999988751441255674089836530016565421101233
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS--IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
|+|-|-|++|-.+...++.+.-. +++- -|+.. .+-.+. |=-|+ ...-+...++....+.
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~--el~L-~D~~~~~a~g~a~----DL~~~------------~~~~~~~~~v~~~~d~ 61 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVL-LDIVEGLPQGKAL----DISQA------------APILGSDTKVTGTNDY 61 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC--EEEE-ECCCCCHHHHHHH----HHHHH------------HHCCCCCCEEEECCCH
T ss_conf 98989688899999999857996--7999-8099980057988----77613------------2015898589947887
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCHH----------------HHC--CCCEEEEECCCCCCCEEEEEECCCCCCCCCCE
Q ss_conf 333446563278606643332122001----------------105--84234330367887348984055321222210
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQEKASLH----------------LSN--GSQRVLVSAPCKGVKKTIVYGVNHQSLNKEDK 144 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~~~~~H----------------L~~--GakkVIiSaP~kd~~~tiV~GvN~~~~~~~~~ 144 (333)
+++ +|.|+|+=+.|.-+....-+.- .+. .+.-+++|-|. |.--.+. -....| |.++
T Consensus 62 ~~~--~daDvvVitaG~~~k~g~tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lvvsNPv-Dv~t~~~--~k~sg~-p~~r 135 (300)
T cd01339 62 EDI--AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL-DVMTYVA--YKASGF-PRNR 135 (300)
T ss_pred HHH--CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HHHHHHH--HHHHCC-CHHH
T ss_conf 994--799899990677899899889999988999999999999659984899827938-9999999--997298-8455
Q ss_pred EECCCCC-CHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 3305764-10234668887541210232210011345
Q gi|254780654|r 145 VVSNASC-TTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 145 IiS~aSC-Ttn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
+|+.+.- .| +=+-..|.+++|+..-. ||+|
T Consensus 136 viG~gt~LDs---~R~r~~la~~l~v~~~~---V~~~ 166 (300)
T cd01339 136 VIGMAGVLDS---ARFRYFIAEELGVSVKD---VQAM 166 (300)
T ss_pred EECCCCHHHH---HHHHHHHHHHHCCCHHH---CEEE
T ss_conf 2333311788---99999999995999546---0676
No 189
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=51.83 E-value=19 Score=16.86 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=52.6
Q ss_pred EEECCCHHHHH-HHHHHHHCCCCCEE-EEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC------CCCCC
Q ss_conf 88566868899-99999968888728-999606889999998875144125567408983653001656------54211
Q gi|254780654|r 6 AINGFGRIGRC-ILRAAVESRRDDVR-IVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLG------PIQVT 77 (333)
Q Consensus 6 gINGfGRIGR~-v~R~~~~~~~~~i~-ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~------~i~i~ 77 (333)
-|-||===||. +++.+++.+. +-+ .|-+||+++...=+.|+...+ ..-++..+++++-.-+ -..+.
T Consensus 8 iltGFLGaGKTTlL~~lL~~~~-~~riaVivNEfGev~iD~~li~~~~-----~~v~eL~nGCiCCs~~~dl~~~l~~l~ 81 (317)
T PRK11537 8 LLTGFLGAGKTTLLRHILNEQH-GYKIAVIENEFGEVSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDALLDLL 81 (317)
T ss_pred EEEECCCCCHHHHHHHHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCC-----CCEEEECCCCEEEEECCHHHHHHHHHH
T ss_conf 9830888899999999972778-9978999837614533298873565-----326884477368730522899999999
Q ss_pred CCCCCCCCCCCCCC-EEEEECCCCCCCCCCCHHH
Q ss_conf 01233333446563-2786066433321220011
Q gi|254780654|r 78 SIRDPQDLPWGDVD-VAMECTGFFVTQEKASLHL 110 (333)
Q Consensus 78 ~~~~p~~i~W~~vD-iViEcTG~f~~~~~~~~HL 110 (333)
...++.+++ .| |+||+||.-.-..-++..+
T Consensus 82 ~~~~~~~~~---~D~IiIEtsGlAdP~~I~~~~~ 112 (317)
T PRK11537 82 DNLDRGNIQ---FDRLVIECTGMADPGPIIQTFF 112 (317)
T ss_pred HHHHCCCCC---CCEEEEECCCCCCHHHHHHHHH
T ss_conf 866435777---5479996257788399999986
No 190
>PTZ00325 malate dehydrogenase; Provisional
Probab=51.28 E-value=11 Score=18.48 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=71.0
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 618988566-8688999999996888872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 2 VCKVAINGF-GRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 2 ~ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|.||+|-|- |++|-.+.-.+..+.-.+ |++-+ |+...+-.+- |=-|..+...+ .++.. .
T Consensus 1 m~KV~IIGA~G~VG~s~A~~l~~~~~~~-elvL~-Di~~a~g~a~----Dl~~~~~~~~~-------------~~~~~-~ 60 (313)
T PTZ00325 1 MFKVAVLGAAGGIGQPLSLLLKRNPYVS-TLSLY-DIVGAPGVAA----DLSHIPSPAKV-------------TGYAK-G 60 (313)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCC-EEEEE-ECCCCHHHHH----HHHCCCCCCCC-------------CEECC-C
T ss_conf 9389998999869999999998389977-79998-0897266898----88675553566-------------54527-9
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHH-HHCCC-----------------CEEEEECCCCCCCEEEEE-E-CCC-CCC
Q ss_conf 33333446563278606643332122001-10584-----------------234330367887348984-0-553-212
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLH-LSNGS-----------------QRVLVSAPCKGVKKTIVY-G-VNH-QSL 139 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~H-L~~Ga-----------------kkVIiSaP~kd~~~tiV~-G-vN~-~~~ 139 (333)
+..+ .-++.|+|+=+.|.-+.....+.- |+..+ .-+++|-|. |. .|.++ - ... ..|
T Consensus 61 ~~~e-~~~~aDIVVitaG~~rkpg~tR~dLl~~N~~I~~~i~~~i~~~~~~aiiivvtNPv-D~-mt~i~~~~~~~~~~~ 137 (313)
T PTZ00325 61 ELHK-AVDGADVVLIVAGVPRKPGMTRDDLFNTNAGIVRDLVLACASSAPKAIFGIITNPV-NS-TVPIAAETLKKAGVY 137 (313)
T ss_pred CHHH-HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCH-HH-HHHHHHHHHHHCCCC
T ss_conf 8889-84899899988898899789689999970699999999999769980999736824-79-999999999974799
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 22210330576410234668887541210232210011345
Q gi|254780654|r 140 NKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 140 ~~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
+.++||.. |+---+=+-..|.+++|+..-. ||+|
T Consensus 138 -~~~rViG~---t~LDsaR~r~~la~~l~v~~~~---V~a~ 171 (313)
T PTZ00325 138 -DPARLFGV---TTLDVVRARTFVAEALGRSPYD---VDVP 171 (313)
T ss_pred -CCCEEEEE---EHHHHHHHHHHHHHHHCCCHHH---EEEE
T ss_conf -80107764---2288899999999986928678---0777
No 191
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=50.38 E-value=8 Score=19.35 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=48.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCCCCCCCEEECCCCC-CH-H
Q ss_conf 5632786066433321220011058423433-0367887-----------3489840553212222103305764-10-2
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQSLNKEDKVVSNASC-TT-N 154 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~~~~~~~IiS~aSC-Tt-n 154 (333)
.+++=++--|-.++.+.++..|+.||.||++ |+..+|. .+ +|.++.-. +.++...+-- .| -
T Consensus 71 ~~~~pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~~n~~~i~~~~~~~g~~-ivvsiD~k----~~~v~~~gw~~~t~~ 145 (241)
T PRK00748 71 AVDIPVQLGGGIRDLETVEAYLDAGVARVIIGTAAVKNPELVKEACKKFPGR-IVVGLDAR----DGKVATRGWQEVSGV 145 (241)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCHHHHHHHHHHCCCC-EEEEEEEC----CCEEECCCCCCCCCC
T ss_conf 6799999827707499999999769775886471033968999998623555-79999821----665401575546797
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 3466888754121023221001134
Q gi|254780654|r 155 CLVPVVHVLDKMFGIEKGYMTTVHS 179 (333)
Q Consensus 155 ~laPvlk~l~~~~gI~~g~~TTiH~ 179 (333)
-+.-.++-+ +..|+..=.+|.|.-
T Consensus 146 ~~~~~i~~~-~~~G~~eii~tdI~~ 169 (241)
T PRK00748 146 DLEDLAKRF-EDAGVAAIIYTDISR 169 (241)
T ss_pred CHHHHHHHH-HHCCCCEEEEEEEEC
T ss_conf 489999999-855875699988705
No 192
>PRK10537 voltage-gated potassium channel; Provisional
Probab=49.92 E-value=21 Score=16.67 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=19.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9885668688999999996888872899
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIV 32 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~iv 32 (333)
+-|-|+||+||.+.+.+.++. .++.|+
T Consensus 207 ~IICGyG~~g~~v~~eL~~~g-~~vVVI 233 (356)
T PRK10537 207 FIICGHSPLAINTYLGLRQRG-QAVTVI 233 (356)
T ss_pred EEEECCCHHHHHHHHHHHHCC-CCEEEE
T ss_conf 899898837999999999729-997999
No 193
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=49.76 E-value=13 Score=17.92 Aligned_cols=148 Identities=22% Similarity=0.308 Sum_probs=70.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 898856686889999999968888-7289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~-~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
||+|-|-|++|-.+...+..+.-. ++-++-||. .-.+-.+.=|. |+.. ..+..+++. ..+.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~-~~a~G~a~DL~----~~~~------------~~~~~~~i~-~~~~ 63 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-EKAEGEALDLE----DALA------------FLPSPVKIK-AGDY 63 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHHHHHHH----HHHH------------HCCCCEEEE-ECCH
T ss_conf 5999996988999999998579987799981898-70176999887----0133------------059973996-0887
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCHHH---------------H-CC--CCEEEEECCCCCCCEEEEEECCCCCCCCCCE
Q ss_conf 3334465632786066433321220011---------------0-58--4234330367887348984055321222210
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQEKASLHL---------------S-NG--SQRVLVSAPCKGVKKTIVYGVNHQSLNKEDK 144 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~~~~~HL---------------~-~G--akkVIiSaP~kd~~~tiV~GvN~~~~~~~~~ 144 (333)
+++ ++.|+|+=+.|.-+.....+.-| . .+ +.-+++|-|. |. .+.++ -....| |.++
T Consensus 64 ~~~--~~aDvvVitAG~~rk~g~~R~dLl~~N~~I~k~i~~~i~~~~p~aivivvtNPv-Dv-mt~~~-~k~sg~-p~~r 137 (306)
T cd05291 64 SDC--KDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV-DV-ITYVV-QKLSGL-PKNR 137 (306)
T ss_pred HHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH-HH-HHHHH-HHHCCC-CHHH
T ss_conf 884--789999990676679999878999978999999999987229971899935816-78-99999-985099-8666
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 330576410234668887541210232210011345
Q gi|254780654|r 145 VVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 145 IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
+|..+.. -=-+=+-+.|.+++|+... .||+|
T Consensus 138 ViG~gT~--LDs~R~~~~ia~~l~v~~~---~V~~~ 168 (306)
T cd05291 138 VIGTGTS--LDTARLRRALAEKLNVDPR---SVHAY 168 (306)
T ss_pred EECCCCH--HHHHHHHHHHHHHHCCCHH---HCEEE
T ss_conf 1154540--8999999999998599955---63346
No 194
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=49.54 E-value=21 Score=16.63 Aligned_cols=13 Identities=8% Similarity=0.304 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 0678899998741
Q gi|254780654|r 252 NIDEINATMKYFA 264 (333)
Q Consensus 252 t~e~in~~~~~as 264 (333)
+.|++.++|+...
T Consensus 322 ~le~~~eA~~~l~ 334 (347)
T PRK10309 322 SFESFAQAVRDLA 334 (347)
T ss_pred EHHHHHHHHHHHH
T ss_conf 4999999999998
No 195
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.32 E-value=6.5 Score=19.94 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=49.0
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCCC-----------EEEEEECCCCCCCCCCEEECCCCCCHH-HH
Q ss_conf 632786066433321220011058423433-03678873-----------489840553212222103305764102-34
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGVK-----------KTIVYGVNHQSLNKEDKVVSNASCTTN-CL 156 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~~-----------~tiV~GvN~~~~~~~~~IiS~aSCTtn-~l 156 (333)
..+-++-.|--++.+.++..|+.||.||++ |+..++.+ ..++.++.-. ....+...+.=.+. -+
T Consensus 71 ~~~piqvGGGIrs~e~~~~~l~~Ga~kViigS~a~~np~~~~~~~~~~G~~~iv~siD~~---~~~~v~~~Gw~~~~~~~ 147 (231)
T PRK13586 71 GFSWIQVGGGIRDVEKAERLLSYDCSAIVMSTLPFTNPDTFRRIVAGIGENRVLVSVDYD---DRKYVLIKGWKEKSMKV 147 (231)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHHCCCCEEEEEEEC---CCCEEEEECCCCCCCCH
T ss_conf 598579856717699999999779988997688876959999999984996689999975---89689984872688669
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf 66888754121023221001134
Q gi|254780654|r 157 VPVVHVLDKMFGIEKGYMTTVHS 179 (333)
Q Consensus 157 aPvlk~l~~~~gI~~g~~TTiH~ 179 (333)
.-.++.+ +.+|+..-.+|.|..
T Consensus 148 ~~~i~~~-~~~g~~~ii~TdI~~ 169 (231)
T PRK13586 148 EDAISHV-NSLESLGVIFTYVCN 169 (231)
T ss_pred HHHHHHH-HHCCCCEEEEEEECC
T ss_conf 9999999-975998899976451
No 196
>PRK05211 consensus
Probab=48.76 E-value=8.5 Score=19.18 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCC--CCCCCCCEEECC-----C
Q ss_conf 5632786066433321220011058423433-0367887-----------3489840553--212222103305-----7
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNH--QSLNKEDKVVSN-----A 149 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~--~~~~~~~~IiS~-----a 149 (333)
.+.+=+.--|--++.+.++..|+.||.||++ |+-.++. .+.+|.|++. +....+..+... .
T Consensus 63 ~~~~Pl~vGGGIrs~~~i~~ll~~GadkViigs~a~~np~li~~~~~~fG~q~IvvsiD~~~~~~~~~~~v~~~~g~~~~ 142 (248)
T PRK05211 63 VIDIPFCVAGGIKSVEDAREILSFGADKISINSPALADPTLITRLADRFGVQCIVVGIDSWFDAETGKYQVYQYTGDESR 142 (248)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 67985896278013899999998799889989767619618999998579936999997102555785799982586565
Q ss_pred CCCHHHHHHHHHHHH--HCCCHHHHHCCCCCCCCCCCCCCCCCC--CCCC---CCCCCCCCCCCC-CCHHHHHHHHHHH-
Q ss_conf 641023466888754--121023221001134532223556654--5300---011236564645-3112456777762-
Q gi|254780654|r 150 SCTTNCLVPVVHVLD--KMFGIEKGYMTTVHSYTGDQHVLDAGH--SDLY---RSRAAAISMVPT-STGAAKAVELVLP- 220 (333)
Q Consensus 150 SCTtn~laPvlk~l~--~~~gI~~g~~TTiH~~t~~Q~l~D~~~--~d~R---r~Raa~~niIPt-~Tgaa~ai~~vlP- 220 (333)
+..|+ ..++.++. +..|+-.=.+|.|.- ||.. -|+. .-++. .+ +|- ..|.+..+..+.-
T Consensus 143 ~~~t~--~~~~d~i~~~~~~G~geIl~t~Idr--------DG~~~G~dl~l~~~i~~~-~~-iPvIasGGv~s~~di~~~ 210 (248)
T PRK05211 143 TKATQ--WETLDWVKEVQKRGAGEIVLNMMNQ--------DGVRNGYDLAQLKKVRAI-CH-VPLIASGGAGTMEHFLEA 210 (248)
T ss_pred CCCCC--CCHHHHHHHHHHCCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHH-CC-CCEEEECCCCCHHHHHHH
T ss_conf 30477--3699999999975986699989878--------997278899999999974-69-999998888999999999
Q ss_pred ----HCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf ----017871043431233531011234332012206788999987
Q gi|254780654|r 221 ----NLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 221 ----~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
.+.|-+.|.+| -++..+..++.+.|++
T Consensus 211 ~~~~~~~gvi~gs~~---------------~~~~i~l~e~k~~L~~ 241 (248)
T PRK05211 211 FRDADVDGALAASVF---------------HKQIINIGELKQYLAA 241 (248)
T ss_pred HHHCCCHHHHHHHHH---------------HCCCCCHHHHHHHHHH
T ss_conf 986798413304888---------------8899999999999998
No 197
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=48.53 E-value=18 Score=17.05 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.3
Q ss_pred CCCEEEEEECCCCCCCCCC
Q ss_conf 8734898405532122221
Q gi|254780654|r 125 GVKKTIVYGVNHQSLNKED 143 (333)
Q Consensus 125 d~~~tiV~GvN~~~~~~~~ 143 (333)
+.+.+++|+.|.+.+.++|
T Consensus 126 ~~d~llA~~mNGepL~~~H 144 (317)
T cd02110 126 DDDALLAYEMNGEPLPPDH 144 (317)
T ss_pred CCCCEEEEEECCEECCHHH
T ss_conf 9982999804895886652
No 198
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.02 E-value=22 Score=16.48 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 88566868899999999688887289996068
Q gi|254780654|r 6 AINGFGRIGRCILRAAVESRRDDVRIVAINDL 37 (333)
Q Consensus 6 gINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 37 (333)
.|-|+|+-|+.+.|.+.+. +.+|. +.|.
T Consensus 4 ~V~GlG~sG~s~a~~L~~~---G~~v~-~~D~ 31 (459)
T PRK02705 4 HVIGLGRSGIAAARLLKAQ---GWEVV-VSER 31 (459)
T ss_pred EEEEECHHHHHHHHHHHHC---CCEEE-EEEC
T ss_conf 9995489999999999978---99599-9989
No 199
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=48.02 E-value=8.1 Score=19.32 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=54.2
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE-CCCCCC-----------CEEEEEECCCCC-CCCCCEEECCCCCCHH-
Q ss_conf 56327860664333212200110584234330-367887-----------348984055321-2222103305764102-
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVS-APCKGV-----------KKTIVYGVNHQS-LNKEDKVVSNASCTTN- 154 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS-aP~kd~-----------~~tiV~GvN~~~-~~~~~~IiS~aSCTtn- 154 (333)
++.+-+.--|--++.+.++..|+.||.||++. +..+|. ...+|.++.-.. .+.+..+...+.....
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i~~~~~~fG~q~IvvsiD~k~~~~~~~~v~~~g~~~~t~ 151 (253)
T PRK01033 72 ECFMPLCYGGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLITEAAEIYGSQSVVVSIDVKKRLFGRYDVYTHNGTKKTG 151 (253)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCC
T ss_conf 76998898688121688899986798669999878637416578998779976999999824877834789867953678
Q ss_pred -HHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf -3466888754121023221001134
Q gi|254780654|r 155 -CLVPVVHVLDKMFGIEKGYMTTVHS 179 (333)
Q Consensus 155 -~laPvlk~l~~~~gI~~g~~TTiH~ 179 (333)
-+--.++-+ +..|+.+=.+|-|.-
T Consensus 152 ~~~~~~~~~~-~~~g~geil~TdI~r 176 (253)
T PRK01033 152 LDPVEFAKQA-EELGAGEIVLNSIDR 176 (253)
T ss_pred CCHHHHHHHH-HHCCCCEEEEEEECC
T ss_conf 5589999998-746977999987848
No 200
>PRK06199 ornithine cyclodeaminase; Validated
Probab=47.86 E-value=22 Score=16.46 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=44.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC--CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888872899960688--999999887514412556740898365300165654211012
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN--SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~--~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
-.+||-|.|.++|..+++++.- +++|+-|.|-|.. ..+.++-.++- +|+.- ..+. -..
T Consensus 156 ~~lgiIG~G~qAr~~l~Al~~v-rp~i~~V~V~~r~~~~a~~fa~~~~~-----~~~~~------------~~v~--~~~ 215 (379)
T PRK06199 156 KVVGLVGPGVMGKTIVAAFMAV-CPGIDTIKIKGRSQKSLDAFATWVAE-----TYPQI------------TEVV--VVD 215 (379)
T ss_pred CEEEEECCHHHHHHHHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHHHH-----HCCCC------------CEEE--EEC
T ss_conf 7899989639999999999986-17888899988999999999999997-----66888------------5089--829
Q ss_pred CCCCCCCCCCCEEEEECCCC
Q ss_conf 33333446563278606643
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFF 100 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f 100 (333)
++++. -.+.|||+-||..-
T Consensus 216 s~eea-v~~aDIVvtaTs~~ 234 (379)
T PRK06199 216 SEEEV-VRGSDIVTYCTSGE 234 (379)
T ss_pred CHHHH-HHCCCEEEECCCCC
T ss_conf 99999-73799999777788
No 201
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=47.49 E-value=11 Score=18.46 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=29.5
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC
Q ss_conf 632786066433321220011058423433-0367887
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV 126 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~ 126 (333)
.++-++--|--++.+.+...|+.|+.|||+ |++.++.
T Consensus 74 ~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p 111 (241)
T COG0106 74 TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNP 111 (241)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCEECCH
T ss_conf 79977840876789999999987998899803121699
No 202
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.32 E-value=11 Score=18.54 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=57.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC-CCCCCCCEEEEECCCCCC-CC-CCCCCCCC
Q ss_conf 1898856686889999999968888728999606889999998875144-125567408983653001-65-65421101
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDS-VHGRFPGEVKIIGDTIDV-GL-GPIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS-~hG~~~~~v~~~~~~l~i-n~-~~i~i~~~ 79 (333)
-||.|-|.|=.|-.++..+...-=-.+.++ =.|.-++.+|.--.-|+. --|+.+. +.-...|.- |- -+|..+.+
T Consensus 139 a~VlivG~GGLGs~~a~yLA~aGVG~i~lv-D~D~Ve~SNL~RQil~~~~diG~~Ka--~~a~~~L~~~Np~i~i~~~~~ 215 (379)
T PRK08762 139 ARVLLIGAGGLGSPAAFYLAAAGVGHLRIA-DHDVVDRSNLQRQILHTEDSVGQPKV--DSAAQRIAALNPRVQVEAVQT 215 (379)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCHHHCCCCCHHHCCCHHH--HHHHHHHHHHCCCCCEEEEHH
T ss_conf 978998887557999999998379758976-28861334501125746433555589--999999998689973385021
Q ss_pred C-CCCCCC--CCCCCEEEEECCCCCCCCCCCHHH-HCCCCEEEEECCCC
Q ss_conf 2-333334--465632786066433321220011-05842343303678
Q gi|254780654|r 80 R-DPQDLP--WGDVDVAMECTGFFVTQEKASLHL-SNGSQRVLVSAPCK 124 (333)
Q Consensus 80 ~-~p~~i~--W~~vDiViEcTG~f~~~~~~~~HL-~~GakkVIiSaP~k 124 (333)
+ +++++. -.++|+|+|||-.|.++--....- +. ++-+|++-.-
T Consensus 216 ~l~~~n~~~li~~~DlViDctDN~~tR~liN~~c~~~--~~PlV~ga~~ 262 (379)
T PRK08762 216 RVTSSNVEALLQDVDVVVDGADNFPARYLLNDACVKL--GKPLVYGAVQ 262 (379)
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH--CCCEEEEEEE
T ss_conf 0898999999862889998688778899999999997--9997999884
No 203
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=47.19 E-value=23 Score=16.39 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=25.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 1898856686889999999968888728999606889999998
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAH 45 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~ 45 (333)
.+|+|-|||-+|+.+.+.+.+. +-.++ +.|+ +.+...+
T Consensus 29 k~VaIqG~GnVG~~~A~~l~~~---Gakvv-v~d~-~~~~~~~ 66 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE---GAKLI-VADI-NEEAVAR 66 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEEC-CHHHHHH
T ss_conf 9999989879999999999967---99799-9826-8899999
No 204
>KOG2380 consensus
Probab=47.07 E-value=22 Score=16.53 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=19.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC
Q ss_conf 61898856686889999999968
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVES 24 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~ 24 (333)
+.+|||-|||-.|+....-+...
T Consensus 52 tl~IaIIGfGnmGqflAetli~a 74 (480)
T KOG2380 52 TLVIAIIGFGNMGQFLAETLIDA 74 (480)
T ss_pred CEEEEEEECCCHHHHHHHHHHHC
T ss_conf 44899971370889999999864
No 205
>PRK02747 consensus
Probab=46.30 E-value=10 Score=18.72 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCCCC-----CCCEEECCCCC
Q ss_conf 5632786066433321220011058423433-0367887-----------34898405532122-----22103305764
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQSLN-----KEDKVVSNASC 151 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~~~-----~~~~IiS~aSC 151 (333)
.+.+=+.--|--++.+.+...|+.||.||++ |+..+|. ...+|.+++-.... ..-++..++.=
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~l~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~~~~ 151 (257)
T PRK02747 72 QCFMPLTVGGGVRTVDDIRKLLLAGADKVSINSAAVARPEFVAEAADKFGSQCIVVAIDAKRVSPAGENDRWEIFTHGGR 151 (257)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCEEEEECCCC
T ss_conf 66998898488207388789987699689834446548347777887559657999998775157677873899988984
Q ss_pred CHHHHHHHHHHHH--HCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCC---CCC-CCCCCCCCCCCHHHHHHHHHHHHC-
Q ss_conf 1023466888754--1210232210011345322235566545--300---011-236564645311245677776201-
Q gi|254780654|r 152 TTNCLVPVVHVLD--KMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLY---RSR-AAAISMVPTSTGAAKAVELVLPNL- 222 (333)
Q Consensus 152 Ttn~laPvlk~l~--~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~R---r~R-aa~~niIPt~Tgaa~ai~~vlP~l- 222 (333)
... -..+..++. +..|+.+=.+|-|.- ||..+ |+. .-+ .....+| ..|.......+.--|
T Consensus 152 ~~t-~~~~~~~~~~~~~~G~geil~tdI~r--------DG~~~G~dl~l~~~i~~~~~~pvI--asGGv~~~~di~~~~~ 220 (257)
T PRK02747 152 KPT-GIDAVEFAQKVVSLGAGEILLTSMDR--------DGTKAGFDLPLTRAIADAVRVPVI--ASGGVGTLDHLVEGVR 220 (257)
T ss_pred EEC-CCHHHHHHHHHHHCCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHCCCCCEE--EECCCCCHHHHHHHHH
T ss_conf 634-30399999999970998899998835--------573267886999999860799899--9779999999999998
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 7871043431233531011234332012206788999987
Q gi|254780654|r 223 KGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 223 ~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
.+.+.|.+.. .+...++.+..++.+.+++
T Consensus 221 ~~~~~av~~g-----------~~~~~~~~~l~~ak~~L~~ 249 (257)
T PRK02747 221 DGHATAVLAA-----------SIFHFGTYTIGEAKAHMAA 249 (257)
T ss_pred HCCCCEEEEH-----------HHHHCCCCCHHHHHHHHHH
T ss_conf 3898499883-----------2677699899999999998
No 206
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=45.93 E-value=24 Score=16.27 Aligned_cols=106 Identities=23% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHH-HCCCCCCCCCEEEEECCCCCCCCCCCCC-------CCCCC-
Q ss_conf 688999999996888872899960688-9999998875-1441255674089836530016565421-------10123-
Q gi|254780654|r 12 RIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLR-YDSVHGRFPGEVKIIGDTIDVGLGPIQV-------TSIRD- 81 (333)
Q Consensus 12 RIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll~-yDS~hG~~~~~v~~~~~~l~in~~~i~i-------~~~~~- 81 (333)
|+=|.+.|.+-....++..|-| -|++ +...+++++. |..+.|.... --+++.-+..+|...+- +....
T Consensus 119 rl~ra~~~~i~~~iG~~~dIpA-pDvgt~~~~m~wm~dey~~i~g~~~~-gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~ 196 (411)
T COG0334 119 RLSRAFGRAIYRLIGPDTDIPA-PDVGTNPQDMAWMMDEYSKIVGNSAP-GVFTGKPLELGGSLGRSEATGYGVFYAIRE 196 (411)
T ss_pred HHHHHHHHHHHHHCCCCCEECC-CCCCCCHHHHHHHHHHHHHHCCCCCC-CEECCCCCCCCCCCCCCCCCCEEEHHHHHH
T ss_conf 9999999999984598767446-33687899999999743200277876-432277631467799986510330799999
Q ss_pred -CCCCC--CCCCCEEEEECCCCCCCCCCCHHH-HCCCCEEEEEC
Q ss_conf -33334--465632786066433321220011-05842343303
Q gi|254780654|r 82 -PQDLP--WGDVDVAMECTGFFVTQEKASLHL-SNGSQRVLVSA 121 (333)
Q Consensus 82 -p~~i~--W~~vDiViEcTG~f~~~~~~~~HL-~~GakkVIiSa 121 (333)
..... .++.-++|--.|.- -..+..+| +.|||=|.+|-
T Consensus 197 a~~~~g~~l~G~rVaVQG~GNV--g~~aa~~l~~~GAkvv~~sd 238 (411)
T COG0334 197 ALKALGDDLEGARVAVQGFGNV--GQYAAEKLHELGAKVVAVSD 238 (411)
T ss_pred HHHHCCCCCCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEC
T ss_conf 9998177768878999776289--99999999974997999976
No 207
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=45.20 E-value=17 Score=17.23 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECC-CCCCCEEEE
Q ss_conf 12333334465632786066433321220011058423433036-788734898
Q gi|254780654|r 79 IRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP-CKGVKKTIV 131 (333)
Q Consensus 79 ~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP-~kd~~~tiV 131 (333)
+.+.+++--.+.||||||---.+.|..+-.+...--.+||-|.- ..-.|||-+
T Consensus 111 ~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri 164 (263)
T COG1179 111 EENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI 164 (263)
T ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
T ss_conf 856999816899879981320377899999999859977960565678897357
No 208
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=44.65 E-value=13 Score=18.08 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=97.1
Q ss_pred CCEEEEEECCCHHHHHHHH----HHHHCCCCCEEEEEEC-CCC-C-HHHHHHHHHHCCCCCCCCC-------EEEEEC--
Q ss_conf 9618988566868899999----9996888872899960-688-9-9999988751441255674-------089836--
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILR----AAVESRRDDVRIVAIN-DLN-S-IETMAHLLRYDSVHGRFPG-------EVKIIG-- 64 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R----~~~~~~~~~i~ivaIN-d~~-~-~~~~~~Ll~yDS~hG~~~~-------~v~~~~-- 64 (333)
||-||+|.|=|-|||.-.- ++++. +.++..|. |+. | ...+.. -+-.+++..+.. ++...+
T Consensus 1 ~m~~iAiyGKGGIGKSTt~~NlaaalA~---g~rVl~igcDpk~dst~~L~G-~~~ptvl~~l~~~~~~~~~dvv~~g~~ 76 (264)
T PRK13231 1 VLKKIAIYGKGGIGKSTTVSNMAAAYSS---DNSTLVIGCDPKADTTRTLVG-KRIPTVLDTLKDNRQPELEDIIYEGYN 76 (264)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCCHHHHHHC-CCCCCHHHHHHHCCCCCHHHHEEECCC
T ss_conf 9428999789854788899999999987---997799856888502467619-998838898631277776563121789
Q ss_pred CCCCC-----------CCCCCCCCCCCCCCC--CCCCCCCE-EEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCC---C
Q ss_conf 53001-----------656542110123333--34465632-786066433321220011058423433-036788---7
Q gi|254780654|r 65 DTIDV-----------GLGPIQVTSIRDPQD--LPWGDVDV-AMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKG---V 126 (333)
Q Consensus 65 ~~l~i-----------n~~~i~i~~~~~p~~--i~W~~vDi-ViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd---~ 126 (333)
+-+++ .|+-|. ....-.++ .-|.+.|+ ++|+.|--.--.-+-+.-.+-|.+|+| +.|-.. +
T Consensus 77 gi~cvesGgpepg~gcagrgi~-~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~Pir~~~Adev~IVts~e~msLya 155 (264)
T PRK13231 77 NTLCVESGGPEPGVGCAGRGVI-VAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred CEEEEECCCCCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHH
T ss_conf 8499737998877665652176-898999872642247987999435872056670455426698899994785899999
Q ss_pred CEEEEEECCCCCCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 3489840553212222-1033057641023466888754121023221001134532223556654-5300011236564
Q gi|254780654|r 127 KKTIVYGVNHQSLNKE-DKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGH-SDLYRSRAAAISM 204 (333)
Q Consensus 127 ~~tiV~GvN~~~~~~~-~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~-~d~Rr~Raa~~ni 204 (333)
..++..++. .|... --||-|..-..+-. -++.-+.+ .++.|-+..-|. ...|+++...+-+
T Consensus 156 AnnI~~~i~--~~~~rl~GiI~N~r~~~~e~-~iv~~fa~--------------~~g~~vl~~IPr~~~V~~ae~~~~tV 218 (264)
T PRK13231 156 ANNIAKGIK--KLKGKLGGIICNCRNVKNEV-EIVSEFAS--------------LIGSRIIGIIPRSNLVQESELKASTV 218 (264)
T ss_pred HHHHHHHHH--HHCCCCCEEEEECCCCCCHH-HHHHHHHH--------------HCCCCEEEECCCCHHHHHHHHCCCEE
T ss_conf 999999999--95464420896068988779-99999999--------------71996899668947888888629758
Q ss_pred C---CCCCHHHHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 6---45311245677776201787104-3431233531011234332012206788999987
Q gi|254780654|r 205 V---PTSTGAAKAVELVLPNLKGKLDG-SSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 205 I---Pt~Tgaa~ai~~vlP~l~gkl~g-~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
+ |.+..| +.+-+|+.+|.. .-+++|+ +.+.|++.+.|.+
T Consensus 219 ie~~P~S~~A-----~~Yr~LA~~I~~~~~~~~P~--------------pl~~~~l~~~~~~ 261 (264)
T PRK13231 219 VETFPESSQA-----SIYSELANNIMNNQEFTTPE--------------PMDIEEFEEFFYS 261 (264)
T ss_pred EEECCCCHHH-----HHHHHHHHHHHHCCCCCCCC--------------CCCHHHHHHHHHH
T ss_conf 9979898899-----99999999998589997888--------------7998999999998
No 209
>TIGR01202 bchC Chlorophyll synthesis pathway, bchC; InterPro: IPR005903 Some prokaryotes, such as the purple and green sulphur bacteria, gain energy from a mode of photosynthesis that does not generate oxygen, and is inhibited by its presence , . These organisms do not include chlorophylls in their photosynthetic pigments, but instead use closely related molecules known as bacteriochlorophylls. Like chlorophylls, bacteriochlorophylls are tetrapyroles with a five-membered ring structure, differing in the side chains and hydration state of the ring structure. These alterations in structure determine what light wavelengths can be harvested by the organism . Bacteriochlorophyll a is a photosynthetic pigment found in many of the purple bacteria. It is synthesised from protoporphyrin IX in a series of reactions including magnesium-chelation, methyl transfer, ring formation, vinyl-group reduction protochlorophyllide reduction, and finally phytol addition . This entry represents 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase, the enzyme catalysing the penultimate step in light-independent bacteriochlorophyll a biosynthesis .; GO: 0016491 oxidoreductase activity, 0030494 bacteriochlorophyll biosynthetic process.
Probab=44.33 E-value=25 Score=16.11 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=65.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-
Q ss_conf 1898856686889999999968888728999606889999998875144125567408983653001656542110123-
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD- 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~- 81 (333)
.+.-|-|-|-+||++.|..+. .+.+.+.+-+... ...+....+.+ +--++|
T Consensus 156 ~pdLivG~G~lGrLlArLt~~---aG~~~p~VwEt~~------------------~R~~~a~gy~v-------~~P~~dd 207 (325)
T TIGR01202 156 LPDLIVGHGTLGRLLARLTVA---AGGSPPAVWETNP------------------RRRDGATGYEV-------LDPEKDD 207 (325)
T ss_pred CCCEEEECCHHHHHHHHHHHH---CCCCCCEEECCCH------------------HHHHCCCCCEE-------ECCCCCC
T ss_conf 871287167899999999997---1897635547866------------------87301456403-------3774346
Q ss_pred C-CCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCC-CCEEEEEECCCCCCCCCCEEECCCC
Q ss_conf 3-3334465632786066433321220011058423433036788-7348984055321222210330576
Q gi|254780654|r 82 P-QDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKG-VKKTIVYGVNHQSLNKEDKVVSNAS 150 (333)
Q Consensus 82 p-~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd-~~~tiV~GvN~~~~~~~~~IiS~aS 150 (333)
. -.++=.|++.++|+||.-.-.|++-..|+.|= +||+...-.. ...+++.-.| +|-+++.++-
T Consensus 208 vsval~rrdy~~i~D~sG~~~~id~lv~rL~kgG-e~vl~GfYt~P~~f~f~pAF~-----kE~~~r~Aae 272 (325)
T TIGR01202 208 VSVALPRRDYRAIYDASGDPSLIDTLVRRLAKGG-EIVLAGFYTEPVNFDFVPAFM-----KELRLRIAAE 272 (325)
T ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCCCCEEEECHHHH-----HHHHHHHHHH
T ss_conf 3574258730178715786789999999873299-799803357763010206789-----9999999751
No 210
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.26 E-value=25 Score=16.10 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=23.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHH
Q ss_conf 9885668688999999996888872899960688-9999998
Q gi|254780654|r 5 VAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAH 45 (333)
Q Consensus 5 IgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~ 45 (333)
.-|-|+|+.|+.+.|.+.+. +.+|. +.|.. .++....
T Consensus 10 ~LV~G~G~sG~s~a~~L~~~---G~~V~-~~D~~~~~~~~~~ 47 (448)
T PRK03803 10 RIVVGLGKSGMSLVRFLARQ---GYQFA-VTDTRENPPELAT 47 (448)
T ss_pred EEEEEECHHHHHHHHHHHHC---CCEEE-EEECCCCCHHHHH
T ss_conf 89999899999999999978---89599-9918999167999
No 211
>pfam06408 consensus
Probab=43.94 E-value=25 Score=16.07 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.3
Q ss_pred EEEEECCCHHHHHHHHHHHHC
Q ss_conf 898856686889999999968
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVES 24 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~ 24 (333)
||.+-|||-|||.++-.++..
T Consensus 3 ~Iv~iGfGSIgq~~LPLl~rH 23 (471)
T pfam06408 3 PILMIGFGSIGRGTLPLIERH 23 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHH
T ss_conf 779987571674206788876
No 212
>PRK02621 consensus
Probab=43.50 E-value=11 Score=18.48 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCCC-----------EEEEEECCCCCCC---CCCEEECCCCCCH
Q ss_conf 5632786066433321220011058423433-03678873-----------4898405532122---2210330576410
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGVK-----------KTIVYGVNHQSLN---KEDKVVSNASCTT 153 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~~-----------~tiV~GvN~~~~~---~~~~IiS~aSCTt 153 (333)
.+.+-+.--|--++.+.++..|+.||.||++ |+-.+|.+ ..+|.++.-.+-. ..-++..++....
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~~~~~~~~fG~q~Iv~siD~k~~~~~~~gw~~~~~~~~~~ 151 (254)
T PRK02621 72 QVFIPLTVGGGISSLEGIKELLRAGADKVSLNSAAVRDPDLVRQASDRFGSQCIVVAIDARRRKPDNPGWDVYVRGGREN 151 (254)
T ss_pred HCCCCEEEECCEEEHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 67985899633535799999997499989998867647354455687569843399999553534788628996688455
Q ss_pred HHHH--HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCCC---CCCCCCCCCCCC-CHHHHHHHHHHHHCC-C
Q ss_conf 2346--68887541210232210011345322235566545--3000---112365646453-112456777762017-8
Q gi|254780654|r 154 NCLV--PVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLYR---SRAAAISMVPTS-TGAAKAVELVLPNLK-G 224 (333)
Q Consensus 154 n~la--Pvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~Rr---~Raa~~niIPt~-Tgaa~ai~~vlP~l~-g 224 (333)
..+- -.++-+. ..|+..-.+|.|.- ||... |+.. -+.. .+ +|-. .|.+.....+.--|+ +
T Consensus 152 ~~~~~~~~~~~~~-~~g~geil~tdI~~--------DGt~~G~d~~l~~~i~~~-~~-iPvi~sGGi~s~edi~~~l~~~ 220 (254)
T PRK02621 152 TGLDAVEWAEEVA-ERGAGEILLTSMDG--------DGTQAGYDLELTRAIAEA-VE-IPVIASGGAGCCDHIAEALTEG 220 (254)
T ss_pred CCCCHHHHHHHHH-HHCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHH-CC-CCEEEECCCCCHHHHHHHHHHC
T ss_conf 7767999998877-62889699988804--------797576886999999971-79-9799977999999999999858
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 71043431233531011234332012206788999987
Q gi|254780654|r 225 KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 225 kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
++.|.++ + ..-.+++.+.+++.+.+++
T Consensus 221 ~v~gviv------G-----~al~~~~~~l~e~K~~l~~ 247 (254)
T PRK02621 221 KAEAALL------A-----SLLHYGQLTIAEIKADLLA 247 (254)
T ss_pred CCEEEEE------H-----HHHHCCCCCHHHHHHHHHH
T ss_conf 9819877------5-----7878899999999999997
No 213
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase; InterPro: IPR011534 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents aspartate-semialdehyde dehydrogenase from a variety of bacterial species.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0050661 NADP binding, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=43.38 E-value=10 Score=18.67 Aligned_cols=258 Identities=19% Similarity=0.200 Sum_probs=132.2
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCC
Q ss_conf 898856-68688999999996888872899960688999999887514412556740898365300165654-2110123
Q gi|254780654|r 4 KVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPI-QVTSIRD 81 (333)
Q Consensus 4 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i-~i~~~~~ 81 (333)
+||+-| -|-+|-.+++...+.+ ||+. ++.+ |---|-.|. +.=.+++... .+-...+
T Consensus 2 ~vGl~GWrGmvGsvl~~rm~ee~--df~~--------i~~v---ffsts~~G~---------~~P~~~~~~~~~l~~a~~ 59 (367)
T TIGR01745 2 KVGLVGWRGMVGSVLLQRMQEEK--DFDA--------IKPV---FFSTSQLGQ---------KAPSFAKTSANILEDAYD 59 (367)
T ss_pred CEEEEECCHHHHHHHHHHHHHHH--HHHH--------HHHH---HHHHHHCCC---------CCCCCCCHHHHHHHHHHH
T ss_conf 11345320368999999865233--3444--------4454---220133155---------465300001567765655
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC----CCCCEEEEEECCCCCCCC----CCEEECCCCCCH
Q ss_conf 333344656327860664333212200110584234330367----887348984055321222----210330576410
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC----KGVKKTIVYGVNHQSLNK----EDKVVSNASCTT 153 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~----kd~~~tiV~GvN~~~~~~----~~~IiS~aSCTt 153 (333)
.+.+ ++.|+++-|-|---++|-....-++|=+.--|-|.+ +|+.-.+.--||.+-+.. ..+-+-.+.||.
T Consensus 60 ~~~l--k~~d~i~tCqGG~yt~eiyP~lr~~GW~GyWidaas~lrm~~d~~i~ldPvn~~~i~d~~~~G~~~f~GGnCt~ 137 (367)
T TIGR01745 60 IDAL--KELDIIITCQGGDYTKEIYPKLRKAGWKGYWIDAASSLRMKDDAVIILDPVNLDVIKDAVNKGIRTFVGGNCTV 137 (367)
T ss_pred HHHH--HHCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHHHHHHHHCHHHHCCCHHHH
T ss_conf 7877--42576787158740356317887266770353001000003661699752006889988850224421614898
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCC---------------------------CCCCCCCCCCCCCCCCCCC-------
Q ss_conf 234668887541210232210011345---------------------------3222355665453000112-------
Q gi|254780654|r 154 NCLVPVVHVLDKMFGIEKGYMTTVHSY---------------------------TGDQHVLDAGHSDLYRSRA------- 199 (333)
Q Consensus 154 n~laPvlk~l~~~~gI~~g~~TTiH~~---------------------------t~~Q~l~D~~~~d~Rr~Ra------- 199 (333)
.-+..-+--|-..-=++--...|..+. +.+..+++-..+-....|+
T Consensus 138 s~~lm~~GGlf~~~lv~W~~~~tyqaasG~Ga~hm~ell~~mG~~~~~v~~~l~~~~~~il~i~~kv~~~~r~~~~P~~~ 217 (367)
T TIGR01745 138 SLLLMSLGGLFRDELVEWVSVATYQAASGGGARHMRELLKQMGVLYKEVEEELAKPSSAILEIERKVTKLIRSEELPVEN 217 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988631355766888888644320144206899999986318999889875210367666776776654200166001
Q ss_pred ----CCCCCCCCC-------------CHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf ----365646453-------------112456777762017-87104343123353101123433201220678899998
Q gi|254780654|r 200 ----AAISMVPTS-------------TGAAKAVELVLPNLK-GKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMK 261 (333)
Q Consensus 200 ----a~~niIPt~-------------Tgaa~ai~~vlP~l~-gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~ 261 (333)
-+.++||-- -|-| -+.++|-.-. =.++|..+||-..-.-..-+++.|+|.++.++|.+.++
T Consensus 218 f~~Pla~~liPWid~~l~nGqs~eeWkGqa-e~nkil~t~~~i~~dG~Cvr~G~lrChs~~~~~klk~d~~~~~~e~~~~ 296 (367)
T TIGR01745 218 FSVPLAGSLIPWIDKQLDNGQSREEWKGQA-ETNKILGTKSTIPVDGLCVRIGALRCHSQALTIKLKKDVSLEEIEEIIR 296 (367)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHCCHH-HHHHHHCCCCEEEECCEEEEEECEEEEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 266511100013432310576302313314-5665523343466454478750200000002344203577788999986
Q ss_pred HHHCCCCCCEE----EEECCCEEEECCCCCC
Q ss_conf 74100004857----4225873544348878
Q gi|254780654|r 262 YFAEGDLKNIL----GYVTLPLVSVDFNHTS 288 (333)
Q Consensus 262 ~as~~~~~~il----~~~~~~lVS~D~ig~~ 288 (333)
. .+++..++ ..+...+..+-+-|.-
T Consensus 297 ~--~n~W~~~~Pn~~~~t~~~ltP~~~tG~l 325 (367)
T TIGR01745 297 A--HNPWVKVVPNEREITLRELTPAAVTGTL 325 (367)
T ss_pred C--CCCEEEECCCCHHHHHHHCCCCCEECCC
T ss_conf 4--6971442577046688633731110320
No 214
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=43.23 E-value=26 Score=16.00 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHCCC
Q ss_conf 220678899998741000
Q gi|254780654|r 250 DVNIDEINATMKYFAEGD 267 (333)
Q Consensus 250 ~~t~e~in~~~~~as~~~ 267 (333)
....+++|++|++..++.
T Consensus 311 ~~~l~~in~A~~~m~~g~ 328 (339)
T COG1064 311 TIPLDEINEAYERMEKGK 328 (339)
T ss_pred EECHHHHHHHHHHHHCCC
T ss_conf 677899999999987288
No 215
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=43.17 E-value=12 Score=18.17 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCCC-----------EEEEEECCCCCCCC-CCEEECCCCCCHHH
Q ss_conf 5632786066433321220011058423433-03678873-----------48984055321222-21033057641023
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGVK-----------KTIVYGVNHQSLNK-EDKVVSNASCTTNC 155 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~~-----------~tiV~GvN~~~~~~-~~~IiS~aSCTtn~ 155 (333)
++.+-++--|--++.+.++..|+.||.||++ |+..+|.. ..+|.++.-..-.. ...+..++-.. +.
T Consensus 69 ~~~~pi~vGGGIrs~~~~~~~l~~GadkVvigs~~~~n~~~~~~~~~~~Gsq~Iv~siD~k~~~~~~~~v~~~~~~~-~~ 147 (243)
T cd04731 69 EVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK-PT 147 (243)
T ss_pred HCCCCEEEEEEEEEHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCC-CC
T ss_conf 67986899850664799999997799789989844237714357887569930999999765378962898469844-12
Q ss_pred HHHHHHHHH--HCCCHHHHHCCCCCC
Q ss_conf 466888754--121023221001134
Q gi|254780654|r 156 LVPVVHVLD--KMFGIEKGYMTTVHS 179 (333)
Q Consensus 156 laPvlk~l~--~~~gI~~g~~TTiH~ 179 (333)
-.++..++. +..|+.+=.+|-|..
T Consensus 148 ~~~~~~~i~~~~~~G~geil~tdI~~ 173 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDR 173 (243)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 67899999999846987899987257
No 216
>PRK02145 consensus
Probab=41.45 E-value=13 Score=18.07 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE-CCCCCCC-----------EEEEEECCCCCCC----C-CCEEECCCCC
Q ss_conf 56327860664333212200110584234330-3678873-----------4898405532122----2-2103305764
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVS-APCKGVK-----------KTIVYGVNHQSLN----K-EDKVVSNASC 151 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS-aP~kd~~-----------~tiV~GvN~~~~~----~-~~~IiS~aSC 151 (333)
++.+-++--|--++.+.++..|+.||.||++. +-.++.+ ..+|.+++-.... + .-++.+.+-.
T Consensus 73 ~~~iPi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~v~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~v~~~~~~ 152 (257)
T PRK02145 73 QVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGEPPRWEVFTHGGR 152 (257)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCE
T ss_conf 56874896277304688999998199889841556659302245787669834499999873367777750899977871
Q ss_pred CHHHHHH--HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCCC---CC-CCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 1023466--8887541210232210011345322235566545--3000---11-2365646453112456777762017
Q gi|254780654|r 152 TTNCLVP--VVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLYR---SR-AAAISMVPTSTGAAKAVELVLPNLK 223 (333)
Q Consensus 152 Ttn~laP--vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~Rr---~R-aa~~niIPt~Tgaa~ai~~vlP~l~ 223 (333)
....+-+ .++-+ +.+|+.+-.+|-|.- ||..+ |+.. -+ .....+| ..|.+..+..+.--++
T Consensus 153 ~~t~~~~~~~~~~~-~~~G~geil~tdI~r--------DG~~~G~dl~l~~~i~~~~~ipvI--asGGi~s~~di~~~~~ 221 (257)
T PRK02145 153 KATGLDAVEWARKM-AELGAGEILLTSMDR--------DGTKSGFDLALTRAVSDAVPVPVI--ASGGVGSLQHLADGIT 221 (257)
T ss_pred ECCCCCHHHHHHHH-HHCCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHCCCCCEE--EECCCCCHHHHHHHHH
T ss_conf 43677455765688-761878689999847--------787788897999999862699899--9868999999999998
Q ss_pred -CCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -871043431233531011234332012206788999987
Q gi|254780654|r 224 -GKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 224 -gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
|...|.+. =.+....+.+.+++.+.+++
T Consensus 222 ~~~~~av~~-----------g~~~~~~~~~i~e~k~~l~~ 250 (257)
T PRK02145 222 EGHADAVLA-----------ASIFHYGEHTVGEAKRFMAE 250 (257)
T ss_pred HCCCCEEEE-----------HHHHHCCCCCHHHHHHHHHH
T ss_conf 089848765-----------32677799899999999998
No 217
>PRK04281 consensus
Probab=41.41 E-value=12 Score=18.17 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCCCCC---CCEEECCCCCCH
Q ss_conf 5632786066433321220011058423433-0367887-----------348984055321222---210330576410
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQSLNK---EDKVVSNASCTT 153 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~~~~---~~~IiS~aSCTt 153 (333)
.+.+=++.-|--++.+.++..|+.||.||++ |+-.++. ...+|.+++-...+. .-++.+++-...
T Consensus 72 ~~~vpi~vGGGIrs~e~~~~ll~~GadkViigs~a~~np~~l~~~~~~fG~q~Iv~siD~k~~~~~~~~~~i~~~g~~~~ 151 (254)
T PRK04281 72 QVFIPLTVGGGVRTVADIRRLLNAGADKVSINTAAVTRPDLIDEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNP 151 (254)
T ss_pred HCCCCEEEECCEEECHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEECCCCCC
T ss_conf 07962899777545188999997699889977767649267676787559821799998885024688459997588647
Q ss_pred HHHHH--HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCC---CC-CCCCCCCCCCCCHHHHHHHHHHHHCC-C
Q ss_conf 23466--8887541210232210011345322235566545--300---01-12365646453112456777762017-8
Q gi|254780654|r 154 NCLVP--VVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLY---RS-RAAAISMVPTSTGAAKAVELVLPNLK-G 224 (333)
Q Consensus 154 n~laP--vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~R---r~-Raa~~niIPt~Tgaa~ai~~vlP~l~-g 224 (333)
.-+-| .++-+ +.+|+.+=.+|-|.- ||..+ |+. .- +.....+ ...|.+..+..+.--++ +
T Consensus 152 t~~~~~~~~~~~-~~~g~geil~tdI~r--------DGt~~G~d~~l~~~i~~~~~iPv--IasGGv~~~~di~~~~~~~ 220 (254)
T PRK04281 152 TGLDAVEWAVEM-QKRGAGEILLTGMDR--------DGTKQGFNLPLTRAVAEAVDIPV--IASGGVGNVRHLIEGITEG 220 (254)
T ss_pred CCCCHHHHHHHH-HHCCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHC
T ss_conf 754499999998-752998999988857--------88768768699999986169989--9978989999999999808
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 71043431233531011234332012206788999987
Q gi|254780654|r 225 KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 225 kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
.+.|.+.. .+.-....+..++.+++++
T Consensus 221 ~~~~v~~g-----------~~~~~~~~sl~eak~~l~~ 247 (254)
T PRK04281 221 KADAVLAA-----------GIFHFGEIAIREAKRAMRE 247 (254)
T ss_pred CCCEEEEH-----------HHHHCCCCCHHHHHHHHHH
T ss_conf 98889764-----------3777799899999999998
No 218
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR011858 This enzyme acts in the biosynthesis of histidine and has been characterised in Saccharomyces cerevisiae and Arabidopsis where it complements the Escherichia coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=41.31 E-value=10 Score=18.59 Aligned_cols=96 Identities=24% Similarity=0.402 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCC-CCCCCCC-CCCEEEEECCCCCCCCCCCHHHHCCC
Q ss_conf 89999998875144125567408983653-001656542110123-3333446-56327860664333212200110584
Q gi|254780654|r 38 NSIETMAHLLRYDSVHGRFPGEVKIIGDT-IDVGLGPIQVTSIRD-PQDLPWG-DVDVAMECTGFFVTQEKASLHLSNGS 114 (333)
Q Consensus 38 ~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~-l~in~~~i~i~~~~~-p~~i~W~-~vDiViEcTG~f~~~~~~~~HL~~Ga 114 (333)
-+.++.|.|.|-|-+.| .+ |..+-+|..=-..+. ..+.|=. +| |-=-+.+.|+.+|+.||
T Consensus 43 kpSs~YA~LYK~~~~~G----------~HVImLG~nP~n~~AAk~AL~~~Pg~LQV-------GGGIN~~Na~~wl~~GA 105 (274)
T TIGR02129 43 KPSSYYAKLYKDDGVKG----------GHVIMLGPNPLNEDAAKEALSAYPGGLQV-------GGGINAENAQEWLDEGA 105 (274)
T ss_pred CCHHHHHHHHHHCCCCE----------EEEEEECCCCCCHHHHHHHHHHCCCCEEC-------CCCCCHHHHHHHHHCCC
T ss_conf 83899998852158932----------16864086896689999999756675440-------57703688999986389
Q ss_pred CEEEEECC--CCCC-CEEEEEECCCCCCC------CCCEEECCCCCCH
Q ss_conf 23433036--7887-34898405532122------2210330576410
Q gi|254780654|r 115 QRVLVSAP--CKGV-KKTIVYGVNHQSLN------KEDKVVSNASCTT 153 (333)
Q Consensus 115 kkVIiSaP--~kd~-~~tiV~GvN~~~~~------~~~~IiS~aSCTt 153 (333)
-|||+|.= +++. |++ -..-+.++ ..+|+|===||-+
T Consensus 106 ShVIVTSWlF~~~~qdkm---~lDl~RL~~i~~~~GK~rLivDLSCR~ 150 (274)
T TIGR02129 106 SHVIVTSWLFPDGKQDKM---ELDLERLKEIVKLVGKERLIVDLSCRK 150 (274)
T ss_pred CEEEEEEEEECCCCCCHH---HHHHHHHHHHHHHHCCEEEEEEEECCE
T ss_conf 728997666469885412---223788888878649706899630453
No 219
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=41.13 E-value=12 Score=18.28 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE-CCCCCCC-----------EEEEEECCCCC--CCCCCEEECCCCCCHH
Q ss_conf 56327860664333212200110584234330-3678873-----------48984055321--2222103305764102
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVS-APCKGVK-----------KTIVYGVNHQS--LNKEDKVVSNASCTTN 154 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS-aP~kd~~-----------~tiV~GvN~~~--~~~~~~IiS~aSCTtn 154 (333)
++.+=++--|--++.+.++..|+.||.||++. +..++.+ ..+|.+++-.. .+.+.++...+.....
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~~~~~~~~~G~q~ivvsiD~k~~~~~~~~~v~~~g~~~~~ 151 (232)
T TIGR03572 72 ECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRAT 151 (232)
T ss_pred HCCCCEEEEECEEEHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCCC
T ss_conf 72985899713303899999997699689934545219357789999869945899999841677872799966776357
Q ss_pred HHHHHHHHHHH--CCCHHHHHCCCCCC
Q ss_conf 34668887541--21023221001134
Q gi|254780654|r 155 CLVPVVHVLDK--MFGIEKGYMTTVHS 179 (333)
Q Consensus 155 ~laPvlk~l~~--~~gI~~g~~TTiH~ 179 (333)
. .++..++.+ ..|+.+=.+|.|.-
T Consensus 152 ~-~~~~~~i~~~~~~g~geii~tdI~~ 177 (232)
T TIGR03572 152 G-RDPVEWAREAEQLGAGEILLNSIDR 177 (232)
T ss_pred C-CCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9-8799999998735998999988857
No 220
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235 Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=40.93 E-value=13 Score=18.07 Aligned_cols=28 Identities=18% Similarity=0.542 Sum_probs=16.9
Q ss_pred ECCCEEE-EEEEECCCH--HHHHHHHHHHHH
Q ss_conf 2897799-999838714--679999999999
Q gi|254780654|r 301 VSQNLLR-VLVWYDNEW--GFSNRMLDTASA 328 (333)
Q Consensus 301 ~~~~~~K-i~~WYDNEw--gYs~rlidl~~~ 328 (333)
+|++.=| |++=|||.| ||..|++|+++.
T Consensus 31 ~GDt~~K~iYLTFDnGYEnGYT~kILDVLKe 61 (225)
T TIGR02884 31 LGDTSKKVIYLTFDNGYENGYTPKILDVLKE 61 (225)
T ss_pred EECCCCEEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 6338720488514355335770334233203
No 221
>PRK10083 putative dehydrogenase; Provisional
Probab=40.45 E-value=29 Score=15.73 Aligned_cols=15 Identities=7% Similarity=0.410 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 220678899998741
Q gi|254780654|r 250 DVNIDEINATMKYFA 264 (333)
Q Consensus 250 ~~t~e~in~~~~~as 264 (333)
....|+++++|+.+.
T Consensus 310 ~f~L~~~~~A~~~~~ 324 (339)
T PRK10083 310 TFDFQHVADAIELFE 324 (339)
T ss_pred EEEHHHHHHHHHHHH
T ss_conf 989899999999986
No 222
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=39.83 E-value=18 Score=17.06 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCEEEEECC----CCCCC------CCCCHH-----HHCCCCEEE
Q ss_conf 7408983653001656---54211012333334465632786066----43332------122001-----105842343
Q gi|254780654|r 57 PGEVKIIGDTIDVGLG---PIQVTSIRDPQDLPWGDVDVAMECTG----FFVTQ------EKASLH-----LSNGSQRVL 118 (333)
Q Consensus 57 ~~~v~~~~~~l~in~~---~i~i~~~~~p~~i~W~~vDiViEcTG----~f~~~------~~~~~H-----L~~GakkVI 118 (333)
+.++..++-.|.|.|. +..+ .-.+...+|-..+-..++|.| ..... -.++.. .+.+|+.|+
T Consensus 9 p~~id~~~w~l~V~G~V~~p~~~-tl~dL~~~p~~~~~~~~~Cv~N~~~~~~~~~~~W~GV~L~dlL~~ag~~~~a~~v~ 87 (156)
T cd00321 9 PPEIDPDDWRLEVDGLVEKPLSL-TLDDLKALPQVEVIATLHCVGNRWGGGAVSNAEWTGVPLRDLLEEAGPKPGARYVV 87 (156)
T ss_pred CCCCCCCCEEEEEEEECCCCEEE-EHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEHHHHHHHCCCCCCCCEEE
T ss_conf 39667877199999883998086-09998548988999999842667688527974796449999998709998886999
Q ss_pred EEC-------------CCC---CCCEEEEEECCCCCCCCCC
Q ss_conf 303-------------678---8734898405532122221
Q gi|254780654|r 119 VSA-------------PCK---GVKKTIVYGVNHQSLNKED 143 (333)
Q Consensus 119 iSa-------------P~k---d~~~tiV~GvN~~~~~~~~ 143 (333)
+.+ |-. +.+.+++|..|.+.+.++|
T Consensus 88 ~~~~d~~~~~gy~~slpl~~~~~~~~lLA~~~nGepL~~~h 128 (156)
T cd00321 88 FEGADDPGGDGYTTSLPLEKALDPDVLLAYEMNGEPLPPDH 128 (156)
T ss_pred EEEECCCCCCCEEEEEEHHHHHCCCCEEEEEECCEECCHHC
T ss_conf 99856788888377889999528772998455882885650
No 223
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.75 E-value=29 Score=15.66 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=21.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 18988566868899999999688887289996
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 34 (333)
-||||-|-|-+|+.+.-.+.. .+++|+.+
T Consensus 4 ~~VaViGaGtMG~gIA~~~a~---aG~~V~l~ 32 (503)
T PRK08268 4 ATVAVIGAGAMGAGIAQVAAQ---AGHTVLLY 32 (503)
T ss_pred CEEEEECCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 789997968899999999993---89908999
No 224
>KOG1120 consensus
Probab=39.64 E-value=18 Score=17.07 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999688887--2899960688999999887514412556740898365300165654
Q gi|254780654|r 18 LRAAVESRRDD--VRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPI 74 (333)
Q Consensus 18 ~R~~~~~~~~~--i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i 74 (333)
+|+++.++.++ +.|-. .-....-+.|-|+|--.-|+|+..|+.++=.++|+.+..
T Consensus 40 ik~ll~~~~e~~~lrigV--k~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~ 96 (134)
T KOG1120 40 IKQLLSDKPEDVCLRIGV--KQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKAL 96 (134)
T ss_pred HHHHHHHCCCCCEEEEEE--ECCCCCCCEEEEEEECCCCCCCCEEEECCCEEEECCCCE
T ss_conf 999997487676168877--517757635552200168987551454470899814010
No 225
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.60 E-value=29 Score=15.68 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 6453112456777762017871043431233531011234332012206788999987
Q gi|254780654|r 205 VPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 205 IPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
+|..-|+--.+...+-+..|-|.+..+-=..++....|+++......-.++|-+++++
T Consensus 6 ~~~~pG~Lg~vataIg~~GGnI~~idvve~~~~~~v~Ditv~~~d~~h~~~Iv~al~~ 63 (74)
T cd04887 6 LPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 5499864999999998769856778999944995999999986977889999999961
No 226
>KOG0022 consensus
Probab=39.21 E-value=30 Score=15.60 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=17.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 3433201220678899998741000
Q gi|254780654|r 243 LKCVTSRDVNIDEINATMKYFAEGD 267 (333)
Q Consensus 243 lt~~l~k~~t~e~in~~~~~as~~~ 267 (333)
|.-....+...++||++|...-+|.
T Consensus 343 ld~~ITh~l~f~~In~AF~ll~~Gk 367 (375)
T KOG0022 343 LDEFITHELPFEEINKAFDLLHEGK 367 (375)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 3255334667899899999985796
No 227
>PRK03220 consensus
Probab=39.16 E-value=12 Score=18.27 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=84.7
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCCCCCC-------CEEECCC
Q ss_conf 5632786066433321220011058423433-0367887-----------3489840553212222-------1033057
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQSLNKE-------DKVVSNA 149 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~~~~~-------~~IiS~a 149 (333)
++.+-++--|--++.+.++..|+.||.||++ |+..++. ...+|.++.-.....+ -.+.+.+
T Consensus 73 ~~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~g 152 (257)
T PRK03220 73 QVFIPLTVGGGVRTVEDVDSLLRAGADKVSVNTAAIARPELLAELARRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTHG 152 (257)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEECHHHHHHCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEEEEECC
T ss_conf 06964898478587999999998197508720667759477789998709866999999886256774346874999728
Q ss_pred CCCHHHHHH--HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCC
Q ss_conf 641023466--888754121023221001134532223556654530-0011236564645-311245677776201787
Q gi|254780654|r 150 SCTTNCLVP--VVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDL-YRSRAAAISMVPT-STGAAKAVELVLPNLKGK 225 (333)
Q Consensus 150 SCTtn~laP--vlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~-Rr~Raa~~niIPt-~Tgaa~ai~~vlP~l~gk 225 (333)
-.....+-| .++-+ +..|+.+=.+|-|.-= -.+-|+--++ ++-|... + +|- ..|....+..+..-++-.
T Consensus 153 ~~~~t~~~~~~~i~~~-~~~g~geil~tdI~rD----Gt~~G~d~~l~~~i~~~~-~-~piIasGGv~s~~di~~l~~~g 225 (257)
T PRK03220 153 GRRGTGIDAVEWAARG-AELGVGEILLNSMDAD----GTKAGFDLEMLRAVRAAV-T-VPVIASGGAGAVEHFAPAVAAG 225 (257)
T ss_pred CEEECCCCHHHHHHHH-HHCCCCEEEEEEECCC----CCCCCCCHHHHHHHHHHC-C-CCEEEECCCCCHHHHHHHHHCC
T ss_conf 8260287599999998-6269888999988686----602378969999999748-9-9989987899999999999789
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1043431233531011234332012206788999987
Q gi|254780654|r 226 LDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 226 l~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
++|.+. + ........+..++.++++.
T Consensus 226 ~~gv~~------g-----~a~~~~~~s~~~~k~~l~~ 251 (257)
T PRK03220 226 ADAVLA------A-----SVFHFGELTIGQVKAALAA 251 (257)
T ss_pred CCEEEE------H-----HHHHCCCCCHHHHHHHHHH
T ss_conf 979987------4-----6878899889999999998
No 228
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.91 E-value=16 Score=17.43 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=75.9
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCC--CCCCCEEECCCCCCHH-
Q ss_conf 632786066433321220011058423433-0367887-----------348984055321--2222103305764102-
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQS--LNKEDKVVSNASCTTN- 154 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~--~~~~~~IiS~aSCTtn- 154 (333)
+.+-+.--|--++.+.++..|+.||.||++ |+..++. .+.+|.+++-.. .+..-.+...+-....
T Consensus 73 ~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~i~~~~~~~G~q~Iv~siD~~~~~~~~~~~v~~~~~~~~~~ 152 (253)
T PRK02083 73 VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVADPELITELADRFGSQCIVVAIDAKRDGEPGRWEVFTHGGRKPTG 152 (253)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 39877851762138987689877987899998465385355788974698359999998873768718999807841255
Q ss_pred -HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCC-CCCCCCC-CCHHHHHHHHHHHHCC-CCCEE
Q ss_conf -34668887541210232210011345322235566545--30001123-6564645-3112456777762017-87104
Q gi|254780654|r 155 -CLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLYRSRAA-AISMVPT-STGAAKAVELVLPNLK-GKLDG 228 (333)
Q Consensus 155 -~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~Rr~Raa-~~niIPt-~Tgaa~ai~~vlP~l~-gkl~g 228 (333)
.+.-.++-+. ..|+.+=.+|-|.- ||... |+..-..- ...=+|- ..|.......+.--|+ +.++|
T Consensus 153 ~~~~~~i~~~~-~~g~geil~tdI~r--------DG~~~G~d~~l~~~i~~~~~iPiI~sGGv~s~~di~~~l~~~~i~g 223 (253)
T PRK02083 153 IDAVEWAKEVQ-ELGAGEILLTSMDQ--------DGTKNGYDLELTRAVRDAVSVPVIASGGAGNLEHFAEAFTEGGADA 223 (253)
T ss_pred CCHHHHHHHHH-HCCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 23999999987-56987899998855--------5866788999999999757999999889999999999998679809
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 3431233531011234332012206788999987
Q gi|254780654|r 229 SSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 229 ~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
.+. + .+...+..+.+++.+.+++
T Consensus 224 v~~------G-----~~~~~~~~sl~~~k~~L~~ 246 (253)
T PRK02083 224 ALA------A-----SVFHFGEITIGELKAYLAE 246 (253)
T ss_pred EEE------H-----HHHHCCCCCHHHHHHHHHH
T ss_conf 987------1-----2777699999999999998
No 229
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.59 E-value=19 Score=16.94 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCC
Q ss_conf 56327860664333212200110584234330367
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC 123 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~ 123 (333)
++.+-++.-|-.++.+.++..|+.||.||++....
T Consensus 71 ~~~~piqvGGGIrs~e~i~~~l~~Ga~kViigt~a 105 (228)
T PRK04128 71 ETGLKVQVGGGFRTYESIKDAYEIGVENVIIGTKA 105 (228)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 54962897386077999999996899769814512
No 230
>TIGR00624 tag DNA-3-methyladenine glycosylase I; InterPro: IPR004597 One common form of damage to DNA occurs when alkyl groups become covalently linked to DNA, leading to the formation of mutagenic or toxic lesions. Alkylating agents are ubiquitous in the environment and can also exist endogenously; for example S-adenosylmethionine, a commonly used methyl donor in many cellualr pathways, can produce methylation damage. Given the prevalence of alkylating agents it is not surprising that all cellular organisms studied so far have developed repair systems to deal with DNA alkylation . DNA-3-methyladenine glycosylase I (also known as TagI) is part of the broader helix-hairpin-helix DNA repair glycosylase supefamily. It specifically catalyses the release of 3-methylated adenine and, to a lesser extent, guanosine bases from DNA by hydrolysis of the deoxyribose N-glycosidic bond , . A phylogenomic study suggests that TagI evolved in, and is specific to, the bacteria .; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair.
Probab=38.48 E-value=23 Score=16.31 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=30.9
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1001134532223556654530001123656464531124567777620
Q gi|254780654|r 173 YMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPN 221 (333)
Q Consensus 173 ~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~ 221 (333)
+.+=+.|+-++|+.+- .....+=||++|.+++|+.|-|-.
T Consensus 115 lv~~lWSFv~~~P~~~---------~~~~~sEiP~~t~ea~Amsk~LKk 154 (185)
T TIGR00624 115 LVEFLWSFVNDKPQVR---------QRPTDSEIPSITSEAKAMSKELKK 154 (185)
T ss_pred HHHHHHHHCCCCCCCC---------CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3335432206768988---------777656688867678999999875
No 231
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.20 E-value=29 Score=15.74 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCHHHHHHHH-HHCCCCCCCCCEEEEE--CCCC---CCCCCCCCCCCC-CCCCCCCCC--CCCEEEEECCCCCCCCCCCH
Q ss_conf 8999999887-5144125567408983--6530---016565421101-233333446--56327860664333212200
Q gi|254780654|r 38 NSIETMAHLL-RYDSVHGRFPGEVKII--GDTI---DVGLGPIQVTSI-RDPQDLPWG--DVDVAMECTGFFVTQEKASL 108 (333)
Q Consensus 38 ~~~~~~~~Ll-~yDS~hG~~~~~v~~~--~~~l---~in~~~i~i~~~-~~p~~i~W~--~vDiViEcTG~f~~~~~~~~ 108 (333)
.+++...+|. +-|.+--.|.+..++- ..+| .-.|-.+++.+. .|.-+|-=. +-++|.-+.|.-+|...-..
T Consensus 72 ~~id~aiela~~~~~i~~TfGDm~RVPgs~~SL~~~ka~G~DVRiVYS~~dal~iA~enpdk~VVffaiGFETT~P~TA~ 151 (364)
T COG0409 72 GRIDTAIELASSKDVIFCTFGDMMRVPGSPGSLLDAKAEGADVRIVYSPMDALKIAKENPDKKVVFFAIGFETTTPTTAC 151 (364)
T ss_pred HHHHHHHHHHCCCCCEEEECCCEEECCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH
T ss_conf 99999999727899589742443656999754666644896379994589999998649997269995751158973478
Q ss_pred HHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 1105842343303678873489840553212222-103305764102346688875412102322100113453222355
Q gi|254780654|r 109 HLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLNKE-DKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVL 187 (333)
Q Consensus 109 HL~~GakkVIiSaP~kd~~~tiV~GvN~~~~~~~-~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~ 187 (333)
- |.+++..+.. ++-+=.||...-|. ..++.+ -|.-++ =|.-|++.||-..-.++.+.
T Consensus 152 ~--------l~~~~~e~i~-Nf~~ls~H~~~pPa~e~Ll~~-~~~ida------------fi~PGHVStIiG~kpY~~la 209 (364)
T COG0409 152 M--------LLSAKGEGIE-NFFVLSNHRLLPPAVEALLES-EVLIDA------------FLAPGHVSTIIGTKPYEFLA 209 (364)
T ss_pred H--------HHHCCCCCCC-EEEEEEECCCCCHHHHHHHHC-CCCCCC------------EECCCEEEEEECCCCCHHHH
T ss_conf 8--------8734445653-479998220068889999834-443463------------43266147883266007778
Q ss_pred CCC
Q ss_conf 665
Q gi|254780654|r 188 DAG 190 (333)
Q Consensus 188 D~~ 190 (333)
+-+
T Consensus 210 ~ky 212 (364)
T COG0409 210 EKY 212 (364)
T ss_pred HHC
T ss_conf 763
No 232
>PRK05665 amidotransferase; Provisional
Probab=37.42 E-value=32 Score=15.42 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=37.9
Q ss_pred CCEEEEEE-----------CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 96189885-----------6686889999999968888728999606889999998875144125567408983653001
Q gi|254780654|r 1 MVCKVAIN-----------GFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDV 69 (333)
Q Consensus 1 M~ikIgIN-----------GfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~i 69 (333)
|+|||||= -||-.+.. |+.++....+++++. .||-+.|.|+.++. +-+.++|
T Consensus 1 m~mki~IL~~d~~~~~~~~~~g~y~~m-F~~ll~~~~~~~~~~---------------~~~v~~ge~P~~~~-~~dg~vI 63 (240)
T PRK05665 1 MSLRICILETDVLRPELVAQYQGYGRM-FEQLFARQPIAAEFV---------------VYNVVQGDYPADDE-KFDAYLV 63 (240)
T ss_pred CCEEEEEEECCCCCHHHHHHCCCHHHH-HHHHHHHCCCCCEEE---------------EEEEECCCCCCCHH-HCCEEEE
T ss_conf 970899997899987899774998899-999996189985599---------------99700687998977-8789999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 6565421101233333446
Q gi|254780654|r 70 GLGPIQVTSIRDPQDLPWG 88 (333)
Q Consensus 70 n~~~i~i~~~~~p~~i~W~ 88 (333)
-|.+-.++. +.||-
T Consensus 64 TGS~~~vyd-----~~pWi 77 (240)
T PRK05665 64 TGSKADSFG-----TDPWI 77 (240)
T ss_pred ECCCCCCCC-----CCHHH
T ss_conf 589874689-----96769
No 233
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=37.39 E-value=32 Score=15.42 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCC---CCCEEEEEECCC--CCHHHHHH
Q ss_conf 9618988566868899999999688---887289996068--89999998
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESR---RDDVRIVAINDL--NSIETMAH 45 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~---~~~i~ivaINd~--~~~~~~~~ 45 (333)
|++||||--+|-||-.++--++-+. |++|++..+..= -.++....
T Consensus 1 mvvkiGiiKlGNIg~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~ 50 (276)
T PRK00994 1 MVVKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVER 50 (276)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 93799889744520599999987654134685499952667779789999
No 234
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.30 E-value=18 Score=17.03 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCC
Q ss_conf 632786066433321220011058423433-036788
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKG 125 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd 125 (333)
+.+=+.--|-.++.+.++..|+.||.||++ |+..++
T Consensus 74 ~~~pi~vGGGIrs~~~i~~~l~~Ga~kvvigs~~~~~ 110 (240)
T PRK13585 74 TDVSIQLGGGIRSVEDAASLLDLGVDRVILGTAAIEN 110 (240)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHC
T ss_conf 7977899788587999999997699899939811318
No 235
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.28 E-value=32 Score=15.41 Aligned_cols=87 Identities=24% Similarity=0.331 Sum_probs=45.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
|||+|-|.|-||-++--.+.. ...++.+++=. +..+.-++.+ | ++..++. ....+++....+|
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~-ag~~V~li~r~-----~~~~~~i~~~---G-----l~i~~~~---~~~~~~~~~~~~~ 63 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQ-AGHDVTLVARG-----ATLAEALNEN---G-----LRLLEGG---EVFVVPVPAADDP 63 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEEEEECC-----HHHHHHHHHC---C-----EEEECCC---CEEECCCCCCCCH
T ss_conf 989999914999999999984-89988999788-----8899999968---9-----3995289---7698055034886
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 33344656327860664333212200
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQEKASL 108 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~~~~~ 108 (333)
+++ +..|++|=||=.|.+.+-++.
T Consensus 64 ~~~--~~~D~iiv~vKs~~~~~a~~~ 87 (307)
T PRK06522 64 AEL--GPQDLVILAVKAYQLPAALPD 87 (307)
T ss_pred HHC--CCCCEEEEECCCCCHHHHHHH
T ss_conf 674--898889998066689999999
No 236
>PRK00830 consensus
Probab=37.18 E-value=13 Score=17.86 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCCC-----------CEEEEEECCCCC-C---C-CCCEEE-----
Q ss_conf 5632786066433321220011058423433-0367887-----------348984055321-2---2-221033-----
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKGV-----------KKTIVYGVNHQS-L---N-KEDKVV----- 146 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd~-----------~~tiV~GvN~~~-~---~-~~~~Ii----- 146 (333)
++.+-|+--|--++.+.++..|+.||.||++ |+-.++. ...+|.|+.-.. + + +...++
T Consensus 76 ~~~~pi~vGGGIrs~e~~~~ll~~GadkVvIgS~a~~np~~v~~~~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~g 155 (273)
T PRK00830 76 EVFIPLTVGGGIRSIEDIRQILRAGADKVSVNTAAVKNPEFIREASDIFGSQCIVVAIDCKRNYNPKDNPDKTIVELEDG 155 (273)
T ss_pred HCCCCEEEECCEEECCCHHHHHHCCCCEEECHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf 66995896088437732899997698639837989859077899998769905999998433766545676214540478
Q ss_pred --------CCCCCCHHH--HHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCCC----CCCCCCCCCCCCCH
Q ss_conf --------057641023--4668887541210232210011345322235566545--3000----11236564645311
Q gi|254780654|r 147 --------SNASCTTNC--LVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHS--DLYR----SRAAAISMVPTSTG 210 (333)
Q Consensus 147 --------S~aSCTtn~--laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~~~~--d~Rr----~Raa~~niIPt~Tg 210 (333)
..+.-.... +--.++-+ +..|+.+=.+|-|.- ||... |+.. .......+| ..|
T Consensus 156 ~~~w~~v~~~g~~~~t~~~~~~~~~~~-~~~G~geil~tdI~r--------DGt~~G~d~~l~~~i~~~~~iPvI--asG 224 (273)
T PRK00830 156 TCAWYEVVIYGGREFTGIDAVQWAKKV-EELGAGEILLTSMDR--------DGTKDGYDIPITKKISEEVDIPVI--ASG 224 (273)
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHH-HHCCCCEEEEEEECC--------CCCCCCCCHHHHHHHHHCCCCCEE--EEC
T ss_conf 742289997078033786799999999-864988688878757--------796568896999999863799889--988
Q ss_pred HHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2456777762017-871043431233531011234332012206788999987
Q gi|254780654|r 211 AAKAVELVLPNLK-GKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 211 aa~ai~~vlP~l~-gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
.+..+..+.--++ +.++|.+. + .+.-.++.+..++.+.++.
T Consensus 225 Gv~~~~di~~~~~~~~~~~v~~------g-----s~f~~~~~si~e~k~~L~~ 266 (273)
T PRK00830 225 GVGNPEHIYEGFSDGKADAALA------A-----SIFHFNEYSIREVKEYLRE 266 (273)
T ss_pred CCCCHHHHHHHHHHCCCCEEEE------E-----HHHHCCCCCHHHHHHHHHH
T ss_conf 9999999999998389868877------0-----0566699799999999998
No 237
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=37.08 E-value=32 Score=15.39 Aligned_cols=208 Identities=17% Similarity=0.190 Sum_probs=96.0
Q ss_pred CCEEEEEECCCHHHHHHHHH----HHHCCCCCEEEEEEC-CCCCHHHHHHHHHHCCCCC---CCCCEE----E-------
Q ss_conf 96189885668688999999----996888872899960-6889999998875144125---567408----9-------
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRA----AVESRRDDVRIVAIN-DLNSIETMAHLLRYDSVHG---RFPGEV----K------- 61 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~----~~~~~~~~i~ivaIN-d~~~~~~~~~Ll~yDS~hG---~~~~~v----~------- 61 (333)
|.+||+|.|=|-||+.-.-+ +|.. .+-.|+.|. |+ |.|||-+ +...++ +
T Consensus 1 ~~~~iaiyGKGGIGKSTttaNlsaALA~--~GkkV~~IgcDP----------k~DsT~~L~g~~~~tild~l~~~~~~~~ 68 (269)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAALAK--LGKKVLQIGCDP----------KHDSTFTLTGKLVPTVIDILEEVDFHSE 68 (269)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEECCCC----------CCCCHHHCCCCCCCCHHHHHHHCCCCHH
T ss_conf 9539999789954788899999999997--699389981899----------7323011259987878999974387602
Q ss_pred -EECCCCCCCC-CCCCCC------------------CCCCCCCCCC-CCCCEE-EEECC-----CCCCCCCCCHHHHCCC
Q ss_conf -8365300165-654211------------------0123333344-656327-86066-----4333212200110584
Q gi|254780654|r 62 -IIGDTIDVGL-GPIQVT------------------SIRDPQDLPW-GDVDVA-MECTG-----FFVTQEKASLHLSNGS 114 (333)
Q Consensus 62 -~~~~~l~in~-~~i~i~------------------~~~~p~~i~W-~~vDiV-iEcTG-----~f~~~~~~~~HL~~Ga 114 (333)
..-+.++..| ..+... ..+-.+++.. .+.|+| +|+-| -|...- ..|
T Consensus 69 ~~~~ed~~~~G~~gv~cvEaGGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~Pi-------~~A 141 (269)
T PRK13185 69 ELRPEDFVFEGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAAPL-------QYA 141 (269)
T ss_pred HCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCH-------HCC
T ss_conf 1256677633767705664389999877676431899999987287433787999536743336555751-------008
Q ss_pred CEEEE-ECCCCC---CCEEEEEECCCCCCC--CC-CEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 23433-036788---734898405532122--22-103305764102346688875412102322100113453222355
Q gi|254780654|r 115 QRVLV-SAPCKG---VKKTIVYGVNHQSLN--KE-DKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVL 187 (333)
Q Consensus 115 kkVIi-SaP~kd---~~~tiV~GvN~~~~~--~~-~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~ 187 (333)
.+|+| +.|-.. +...+..+++...-. .. .-||.|..-- .. ++.-.. .-++.|-+-
T Consensus 142 d~~~IVts~e~~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~---~d-~v~~fa--------------~~~g~~vl~ 203 (269)
T PRK13185 142 DYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSGG---TD-QIDKFN--------------ERVGLRTLA 203 (269)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC---HH-HHHHHH--------------HHHCCCEEE
T ss_conf 889999253087899999999999865301585323257616883---77-999999--------------986997699
Q ss_pred CCCCC-CCCCCCCCCCCCC---CCCCHHHHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 66545-3000112365646---45311245677776201787104-343123353101123433201220678899998
Q gi|254780654|r 188 DAGHS-DLYRSRAAAISMV---PTSTGAAKAVELVLPNLKGKLDG-SSIRVPTPNVSMVDLKCVTSRDVNIDEINATMK 261 (333)
Q Consensus 188 D~~~~-d~Rr~Raa~~niI---Pt~Tgaa~ai~~vlP~l~gkl~g-~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~ 261 (333)
--|.. ..|+++--++-++ |.+.. ..++.-+.+|+-+|.+ ....+|+ +.+-+|+.+.|.
T Consensus 204 ~IP~~~~V~~se~~g~TviE~~p~~~~--a~v~~~Yr~LA~~i~~~~~~~~P~--------------pl~~~el~~l~~ 266 (269)
T PRK13185 204 HVPDLDAIRRSRLKGKTLFEMEETDEL--EEVQNEYLRLADQLLAGPEPLVPK--------------PLKDREIFDLLS 266 (269)
T ss_pred ECCCCHHHHHHHHCCCEEEEECCCCHH--HHHHHHHHHHHHHHHHCCCCCCCC--------------CCCHHHHHHHHH
T ss_conf 789978899998749867885899817--899999999999998289987888--------------899899999974
No 238
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778 This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=36.41 E-value=25 Score=16.16 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=23.4
Q ss_pred CEEEEEC--CCCCCCCCCC-HHHHCCCCEEEEECCCC-C-CCEEEEE-ECCCCCCCCCCEEECCCCCCHH
Q ss_conf 3278606--6433321220-01105842343303678-8-7348984-0553212222103305764102
Q gi|254780654|r 91 DVAMECT--GFFVTQEKAS-LHLSNGSQRVLVSAPCK-G-VKKTIVY-GVNHQSLNKEDKVVSNASCTTN 154 (333)
Q Consensus 91 DiViEcT--G~f~~~~~~~-~HL~~GakkVIiSaP~k-d-~~~tiV~-GvN~~~~~~~~~IiS~aSCTtn 154 (333)
.+..|.= +.+++...++ +--..|||. ++|=|.. + .++-..+ |++.- .-++||..=||=|
T Consensus 264 ~V~~ETcp~YL~Ld~~~yd~~p~~~~AKy-v~SPPLRP~~~~qd~Lw~~l~~G----~Lq~v~sDHC~F~ 328 (466)
T TIGR02033 264 PVYGETCPQYLLLDDTLYDDKPGFEAAKY-VLSPPLRPEKEDQDALWQALSSG----ALQTVSSDHCTFN 328 (466)
T ss_pred CEEEEEECCCCCCCHHHHCCCCCCCCCCE-ECCCCCCCCCCCHHHHHHHHHCC----CCCEEEECCCCCC
T ss_conf 08998606721134678158777265501-21800133876608999987618----5110330336635
No 239
>PRK01659 consensus
Probab=36.31 E-value=15 Score=17.49 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEE-CCCCCC-----------CEEEEEECCCCCCC--CCCEEECCCCCCHH
Q ss_conf 56327860664333212200110584234330-367887-----------34898405532122--22103305764102
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVS-APCKGV-----------KKTIVYGVNHQSLN--KEDKVVSNASCTTN 154 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiS-aP~kd~-----------~~tiV~GvN~~~~~--~~~~IiS~aSCTtn 154 (333)
++.+-+.--|--++.+.+...|+.||.||++. +-.++. .+.+|.++.-.... .+.++.+.+--...
T Consensus 72 ~~~ipi~vGGGIrs~e~~~~~l~~GadkViigs~a~~n~~~i~~~~~~~G~q~IvvsiD~k~~~~~~~~~i~~~g~~~~~ 151 (252)
T PRK01659 72 KVFIPLTVGGGISSVKDMKRLLRAGADKVSINSAAVLRPELITEGADHFGSQCIVVAIDAKYDAEAGKWNVYTHGGRVDT 151 (252)
T ss_pred HCCCCEEEECCEECHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEECCCCCCC
T ss_conf 56974799633200688889874488559831777529153214676468632699999897056886899968995767
Q ss_pred HHHHHHHHHH--HCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCEEE
Q ss_conf 3466888754--12102322100113453222355665453000--112365646453112456777762017-871043
Q gi|254780654|r 155 CLVPVVHVLD--KMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYR--SRAAAISMVPTSTGAAKAVELVLPNLK-GKLDGS 229 (333)
Q Consensus 155 ~laPvlk~l~--~~~gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr--~Raa~~niIPt~Tgaa~ai~~vlP~l~-gkl~g~ 229 (333)
- .++..++. +.+|+.+=.+|.|.-= -.+-|+--++-. .......+| ..|.......++--|+ +.++|.
T Consensus 152 ~-~~~~~~i~~~~~~g~geil~tdI~rD----G~~~G~dl~l~~~i~~~~~~PiI--asGGi~~~~di~~l~~~~~v~gv 224 (252)
T PRK01659 152 G-LDAIAWAKEAVRLGAGEILLTSMDAD----GTKNGFDLRLTKAISEAVSVPVI--ASGGAGNADHMVEVFQKTTADAA 224 (252)
T ss_pred C-CCHHHHHHHHHHCCCCEEEEEEECCC----CCCCCCCHHHHHHHHHHCCCCEE--EEECCCCHHHHHHHHHHCCCCEE
T ss_conf 7-77999999999769977999988145----85476898999999986899999--99179999999999974898265
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 431233531011234332012206788999987
Q gi|254780654|r 230 SIRVPTPNVSMVDLKCVTSRDVNIDEINATMKY 262 (333)
Q Consensus 230 a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~ 262 (333)
+. =.+....+.+.+++.+.+++
T Consensus 225 ~~-----------g~~~~~~~~sl~e~k~~L~~ 246 (252)
T PRK01659 225 LA-----------ASIFHYGETSIKEVKAKLRE 246 (252)
T ss_pred EE-----------HHHHHCCCCCHHHHHHHHHH
T ss_conf 57-----------54777799999999999998
No 240
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=35.55 E-value=12 Score=18.08 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=17.4
Q ss_pred HHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7777620178710434312335
Q gi|254780654|r 215 VELVLPNLKGKLDGSSIRVPTP 236 (333)
Q Consensus 215 i~~vlP~l~gkl~g~a~RVPt~ 236 (333)
|...-|+++|||+||=+-.|..
T Consensus 17 I~~~~p~~AgKITGMLLEmd~~ 38 (64)
T smart00517 17 VQALEPELAGKITGMLLEMDNS 38 (64)
T ss_pred HHHHCHHHCCCCHHHHHCCCHH
T ss_conf 9987865404402323068889
No 241
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=35.33 E-value=34 Score=15.21 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 66868899999999688887289
Q gi|254780654|r 9 GFGRIGRCILRAAVESRRDDVRI 31 (333)
Q Consensus 9 GfGRIGR~v~R~~~~~~~~~i~i 31 (333)
|-|=||..+.+.+++.....+.+
T Consensus 6 GaGFIGS~Lv~~Ll~~g~~~v~v 28 (280)
T pfam02719 6 GGGSIGSELCRQILKFNPKKIIL 28 (280)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 88679999999999689988999
No 242
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=35.08 E-value=35 Score=15.18 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=69.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH--HHHHCCCCCCCCCEEEEECCCC-CCCC-CCCCCCCC
Q ss_conf 898856686889999999968888728999606889999998--8751441255674089836530-0165-65421101
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAH--LLRYDSVHGRFPGEVKIIGDTI-DVGL-GPIQVTSI 79 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~--Ll~yDS~hG~~~~~v~~~~~~l-~in~-~~i~i~~~ 79 (333)
||-+-|.|-+|--+++.+.-..-..+.|+- .|..+..++.. |+..+.+ |+.+..+ ....+ .+|- -+|..+.+
T Consensus 1 KVlvvGaGglG~e~lk~La~~Gvg~i~ivD-~D~Ie~SNLnRQfLf~~~di-Gk~Ka~~--a~~~l~~~Np~v~I~~~~~ 76 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIID-LDTIDLSNLNRQFLFRKKHV-GKSKAQV--AKEAVLSFNPNVKIVAYHA 76 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCCCCHHHC-CCCHHHH--HHHHHHHHCCCCEEEEECC
T ss_conf 989988888899999999982898599971-99226101466827682218-8709999--9999998888967998616
Q ss_pred C--CCC-CC-CCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECC--CCCCCEEEEEECCCCCCCC--CCEEECCCC
Q ss_conf 2--333-33-4465632786066433321220011058423433-036--7887348984055321222--210330576
Q gi|254780654|r 80 R--DPQ-DL-PWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAP--CKGVKKTIVYGVNHQSLNK--EDKVVSNAS 150 (333)
Q Consensus 80 ~--~p~-~i-~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP--~kd~~~tiV~GvN~~~~~~--~~~IiS~aS 150 (333)
+ ++. .. -|++.|+|++|+--+.+|.-.....-.- .+-++ ++. .++-..+++.|.- +-|+- +..-.|...
T Consensus 77 ~i~~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~-~~PlIegGt~G~~Gqv~viiP~~T-~cY~c~~~~~~~~~P~ 154 (312)
T cd01489 77 NIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAA-DVPLIESGTTGFLGQVQVIKKGKT-ECYECQPKETPKTFPV 154 (312)
T ss_pred CCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCEEEEEEEECCCC-CCCCCCCCCCCCCCCE
T ss_conf 76686434988962999997667899999999999983-997597202464137999848975-6778878998888860
Q ss_pred CC
Q ss_conf 41
Q gi|254780654|r 151 CT 152 (333)
Q Consensus 151 CT 152 (333)
||
T Consensus 155 CT 156 (312)
T cd01489 155 CT 156 (312)
T ss_pred EE
T ss_conf 41
No 243
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771 This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=34.76 E-value=14 Score=17.80 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=36.7
Q ss_pred CCCCCCCCC-----CCEEEEECCCCCCCCCCCHH-HHCCCCEEEEECCCCC-CCEEEEEEC-----CCCCCC---CCCEE
Q ss_conf 333334465-----63278606643332122001-1058423433036788-734898405-----532122---22103
Q gi|254780654|r 81 DPQDLPWGD-----VDVAMECTGFFVTQEKASLH-LSNGSQRVLVSAPCKG-VKKTIVYGV-----NHQSLN---KEDKV 145 (333)
Q Consensus 81 ~p~~i~W~~-----vDiViEcTG~f~~~~~~~~H-L~~GakkVIiSaP~kd-~~~tiV~Gv-----N~~~~~---~~~~I 145 (333)
..+-+|..+ ||||+-|||+||+.=..+-- |+.= |=.+|-++. .+.+||--. .+..++ ...||
T Consensus 1067 ~~~L~PLe~LGRPRIDVvv~lSGIFRD~f~~q~~LLD~a---vk~AA~ADEP~emNfvRKHaL~~~~e~Gi~~e~Aa~R~ 1143 (1384)
T TIGR02025 1067 RYELIPLEKLGRPRIDVVVTLSGIFRDLFVNQMELLDEA---VKLAAKADEPLEMNFVRKHALAQAEEGGIDVEEAAARV 1143 (1384)
T ss_pred EEEECCHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 005534767379606888822844877899999999999---99985127784466167889999974597678886220
Q ss_pred ECCCCCC
Q ss_conf 3057641
Q gi|254780654|r 146 VSNASCT 152 (333)
Q Consensus 146 iS~aSCT 152 (333)
+|||+-+
T Consensus 1144 FsNA~G~ 1150 (1384)
T TIGR02025 1144 FSNAPGS 1150 (1384)
T ss_pred CCCCCCC
T ss_conf 4688987
No 244
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=34.57 E-value=35 Score=15.13 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=34.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC------------CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 96189885668688999999996888------------8728999606889999998875
Q gi|254780654|r 1 MVCKVAINGFGRIGRCILRAAVESRR------------DDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 1 M~ikIgINGfGRIGR~v~R~~~~~~~------------~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
|++++||.|.=-.|++-|..++-... |+.-+|.+-| ..++.++-+.+
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~ 59 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVK 59 (372)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC-HHHHHHHHHCC
T ss_conf 984267741898858889999974896424898542657732796473-67899987538
No 245
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.46 E-value=22 Score=16.45 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEC-CCCC
Q ss_conf 563278606643332122001105842343303-6788
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA-PCKG 125 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSa-P~kd 125 (333)
.+.+-+.--|-.++.+.++..++.||.||++.. ..++
T Consensus 71 ~~~~pi~vGGGIrs~~~~~~l~~~Ga~kvvi~s~~~~~ 108 (234)
T cd04732 71 AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN 108 (234)
T ss_pred HCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHC
T ss_conf 67956897377175999999986488718971401108
No 246
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=34.25 E-value=36 Score=15.10 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=47.4
Q ss_pred EEECCCHHHHH-HHHHHHHCCCCCEEE-EEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC--C----CCC
Q ss_conf 88566868899-999999688887289-996068899999988751441255674089836530016565--4----211
Q gi|254780654|r 6 AINGFGRIGRC-ILRAAVESRRDDVRI-VAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP--I----QVT 77 (333)
Q Consensus 6 gINGfGRIGR~-v~R~~~~~~~~~i~i-vaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~--i----~i~ 77 (333)
-|.||===||. +++.++..+ ++-++ |-+||+++...=..|++... ..-++..+++++-..+. . .+.
T Consensus 4 iitGFLGaGKTTll~~lL~~~-~~~~~avIvNEfG~~~ID~~ll~~~~-----~~v~el~~GCiCCs~~~dl~~~l~~l~ 77 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ-HGRKIAVIENEFGEVGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALLDLL 77 (158)
T ss_pred EEEECCCCCHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCHHHHHCCC-----CEEEEECCCEEEEECCCHHHHHHHHHH
T ss_conf 998488899999999998478-89977999707655463166763788-----249993387146522515899999999
Q ss_pred CCCCCCCCCCCCCC-EEEEECCCCCCCCCCC
Q ss_conf 01233333446563-2786066433321220
Q gi|254780654|r 78 SIRDPQDLPWGDVD-VAMECTGFFVTQEKAS 107 (333)
Q Consensus 78 ~~~~p~~i~W~~vD-iViEcTG~f~~~~~~~ 107 (333)
+...|.+. ..| ++||+||...-.+-++
T Consensus 78 ~~~~~~~~---~~d~iiIE~SGla~P~~i~~ 105 (158)
T cd03112 78 ERLDAGKI---AFDRIVIETTGLADPGPVAQ 105 (158)
T ss_pred HHHHCCCC---CCCEEEEECCCCCCCHHHHH
T ss_conf 97651578---87889996368788289999
No 247
>PRK12688 flagellin; Reviewed
Probab=33.98 E-value=36 Score=15.07 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=34.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC--CCCCC-CC--CEEEEECCCC
Q ss_conf 412556740898365300165654211012333--33446-56--3278606643
Q gi|254780654|r 51 SVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDPQ--DLPWG-DV--DVAMECTGFF 100 (333)
Q Consensus 51 S~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p~--~i~W~-~v--DiViEcTG~f 100 (333)
-.||-+...--.+++.|.+|||.|.|-...-|. .++|+ +| .||-|..|.-
T Consensus 325 n~~ggl~~~~~adGttLtVNGkTITfk~~dap~~~~~~~Gsgv~g~i~tDg~gNs 379 (888)
T PRK12688 325 NTHGGLSTTAIADGTTLTVNGKTITFKTSDAPQGNNILTGSGVLGRIGTDGNGNS 379 (888)
T ss_pred CCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCE
T ss_conf 2346544445577877998675888724788864565535542341331488861
No 248
>TIGR01408 Ube1 ubiquitin-activating enzyme E1; InterPro: IPR000011 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation , , . Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade . The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction.; GO: 0008641 small protein activating enzyme activity, 0006464 protein modification process, 0006512 ubiquitin cycle.
Probab=33.82 E-value=15 Score=17.61 Aligned_cols=52 Identities=31% Similarity=0.367 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 0112365646453112456777762017871043431233531011234332012
Q gi|254780654|r 196 RSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRD 250 (333)
Q Consensus 196 r~Raa~~niIPt~Tgaa~ai~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~ 250 (333)
|-|--++ |+|+-||.|+..+=|.|+|||+++-=||=-..=.+-|=-|..+..
T Consensus 484 Rp~~igk---~KS~~Aa~A~~~iNp~~~GkI~a~~nrVgpetE~if~DeF~ekl~ 535 (1033)
T TIGR01408 484 RPRDIGK---AKSEVAADAVAVINPRLKGKIEAYQNRVGPETETIFDDEFYEKLD 535 (1033)
T ss_pred CCCCCCC---CHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHEECCE
T ss_conf 7420353---025689888988467765312433225065667643730100341
No 249
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=33.76 E-value=36 Score=15.05 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=118.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEE---ECCCCC-CCCCC-CCC-
Q ss_conf 189885668688999999996888872899960688999999887514412556740898---365300-16565-421-
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKI---IGDTID-VGLGP-IQV- 76 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~---~~~~l~-in~~~-i~i- 76 (333)
-.||+-|+|..|+.+.+.+.+. +++|..-|. +.+...-+++.-... +..+.. .++.+. +..-+ |-+
T Consensus 6 ~~IGiIGLGvMG~nmA~Nl~~~---G~~V~vynr--t~~k~~~~~~~~~~~---~~~i~~~~sl~e~v~sl~~pr~Iilm 77 (474)
T PTZ00142 6 SDIGLIGLAVMGQNLSLNMYSR---GFKVSVYNR--TTEKVEEFMKKAKEG---NKFVKGYHSLEELVNSLKRPRRVMLL 77 (474)
T ss_pred CCEEEEEEHHHHHHHHHHHHHC---CCEEEEECC--CHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHCCCCCEEEEE
T ss_conf 7466873638679999999978---987999779--879999999853224---67764667899999737999989998
Q ss_pred CCCCCC-----C-CCCC-CCCCEEEEECCCC-CCCCCCCHHHH-CCCCEEEEECCCC----CC--CEEEEEECCCCCCCC
Q ss_conf 101233-----3-3344-6563278606643-33212200110-5842343303678----87--348984055321222
Q gi|254780654|r 77 TSIRDP-----Q-DLPW-GDVDVAMECTGFF-VTQEKASLHLS-NGSQRVLVSAPCK----GV--KKTIVYGVNHQSLNK 141 (333)
Q Consensus 77 ~~~~~p-----~-~i~W-~~vDiViEcTG~f-~~~~~~~~HL~-~GakkVIiSaP~k----d~--~~tiV~GvN~~~~~~ 141 (333)
...-+| + -+|. +.=|+|||++-.+ ++..+-...|+ .|... +-+|.. ++ -|.+..|-+.+.|+.
T Consensus 78 v~aG~~Vd~vi~~L~~~L~~GDIIID~GNs~~~dt~rr~~~l~~kgI~f--ld~GVSGGe~GAr~GpsiMvGG~~~a~~~ 155 (474)
T PTZ00142 78 IKAGEAVDEFIDNILPHLEKGDIIIDGGNEWYNNSERRIKLCKEKGILY--IGMGVSGGEEGARYGPSLMPGGNPYAYDH 155 (474)
T ss_pred ECCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCE--ECCCCCCCHHHHHCCCEECCCCCHHHHHH
T ss_conf 2698259999999985088999898799888657999999998579918--64788843577733982135886889998
Q ss_pred CCEEECCCCCCH---HH--------HHHHHHHHHHCCCHHHHHCCCCC------------------------------CC
Q ss_conf 210330576410---23--------46688875412102322100113------------------------------45
Q gi|254780654|r 142 EDKVVSNASCTT---NC--------LVPVVHVLDKMFGIEKGYMTTVH------------------------------SY 180 (333)
Q Consensus 142 ~~~IiS~aSCTt---n~--------laPvlk~l~~~~gI~~g~~TTiH------------------------------~~ 180 (333)
-.+++..-++-. -| ....+|.+|. |||.|.|..|- +|
T Consensus 156 v~Pileaiaak~~~~~c~~~~G~~GaGH~vKMVHN--GIEY~~mq~iaE~y~il~~~~~~~~~~i~~vf~~Wn~g~l~sy 233 (474)
T PTZ00142 156 VKDIFQACSAKVGDSPCCDYVGPGSSGHYVKMVHN--GIEYGDMQLISEAYKLMKHILGMSNLELSEVFNKWNEGILDSY 233 (474)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHCC--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 76899997161699987103689871031001035--4038999999999999987359998999999999837653479
Q ss_pred C---------------CCCCCCC----C---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CEE-EEEECCCC
Q ss_conf 3---------------2223556----6---545300011236564645311245677776201787-104-34312335
Q gi|254780654|r 181 T---------------GDQHVLD----A---GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGK-LDG-SSIRVPTP 236 (333)
Q Consensus 181 t---------------~~Q~l~D----~---~~~d~Rr~Raa~~niIPt~Tgaa~ai~~vlP~l~gk-l~g-~a~RVPt~ 236 (333)
+ +.+.++| . ..+..+..-.|...=+|.+|=++....+.+..++.. ... .-+.-|.+
T Consensus 234 LieIt~~il~~~~~~~~~~~~ld~I~d~a~~kGTG~Wt~~~al~lgvp~p~i~~av~aR~lS~~k~~R~~~s~~~~~~~~ 313 (474)
T PTZ00142 234 LIEITADILAKKKDELPNNHLVDKILDIAGQKGTGKWTAIEALDRGIPVPLIAESVDARCISALKEERVKASTHLTGPEA 313 (474)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 99999999975236878982413200555688736989999998099927999999999975359999999974389975
Q ss_pred CCH--------HHHH--HHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 310--------1123--43320122067889999874100
Q gi|254780654|r 237 NVS--------MVDL--KCVTSRDVNIDEINATMKYFAEG 266 (333)
Q Consensus 237 ~vS--------~vDl--t~~l~k~~t~e~in~~~~~as~~ 266 (333)
... +-|| .+.+.+-+++-+=-..+++|++.
T Consensus 314 ~~~~~~~~~~~~~~l~~Aly~s~i~syaQGf~li~~as~~ 353 (474)
T PTZ00142 314 NKKFTGDKEKFEEDLLQALYACKIISYAQGFFLMKEASKE 353 (474)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4556555888999999999999999999999999999898
No 250
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=33.63 E-value=30 Score=15.63 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=3.9
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999998875144
Q gi|254780654|r 40 IETMAHLLRYDS 51 (333)
Q Consensus 40 ~~~~~~Ll~yDS 51 (333)
.+.+--.++.|.
T Consensus 28 ~~~i~~~~~~~~ 39 (941)
T TIGR00763 28 IKLIKEALRLKQ 39 (941)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999987211
No 251
>PRK08655 prephenate dehydrogenase; Provisional
Probab=33.47 E-value=37 Score=15.02 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=67.4
Q ss_pred EEEEEE-CCCHHHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHH--HCCC----CCCC-------C--------CE
Q ss_conf 189885-668688999999996888872899960-6889999998875--1441----2556-------7--------40
Q gi|254780654|r 3 CKVAIN-GFGRIGRCILRAAVESRRDDVRIVAIN-DLNSIETMAHLLR--YDSV----HGRF-------P--------GE 59 (333)
Q Consensus 3 ikIgIN-GfGRIGR~v~R~~~~~~~~~i~ivaIN-d~~~~~~~~~Ll~--yDS~----hG~~-------~--------~~ 59 (333)
|||+|- |+|..||.+.|.+-. .+++|+.-. |....+..+.-|. |.+. -... | .+
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~---sGyeV~I~gRd~~k~~~va~~LGv~~~~~~~e~~~~advVIvsVPI~~T~~VI~~ 77 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKD---KGYEVIVWGRDPKKGKEVAKELGVEYASDNIDAAKDGDIVIVSVPINVTEDVIRE 77 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHH---CCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 9799994798177999999986---7988999815731356788873862224478897249999998488999999999
Q ss_pred E--EEECCCCCCCCCCCC-----CCCCCCCCCC------CC-C-CC-----CEEEEECCCCCCCC---CCCHHHH-CCCC
Q ss_conf 8--983653001656542-----1101233333------44-6-56-----32786066433321---2200110-5842
Q gi|254780654|r 60 V--KIIGDTIDVGLGPIQ-----VTSIRDPQDL------PW-G-DV-----DVAMECTGFFVTQE---KASLHLS-NGSQ 115 (333)
Q Consensus 60 v--~~~~~~l~in~~~i~-----i~~~~~p~~i------~W-~-~v-----DiViEcTG~f~~~~---~~~~HL~-~Gak 115 (333)
+ ....++|..+=..++ -+.+..|.+. |- + ++ ..|+=|-+.-+..+ .+...|+ .||+
T Consensus 78 laP~l~~~~lL~DitSvK~~p~~aMl~~~~~~~~viglHPMFGP~v~sl~gQvVVvcP~~~~~~~~~~~l~~~l~~~Ga~ 157 (441)
T PRK08655 78 VAPHVKEGSLLMDVTSVKERPVEAMKEFAPEGVEILPTHPMFGPRTPSLRGQVVILTPTEKRSNPWFPKVRNFLEEEGAR 157 (441)
T ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCE
T ss_conf 74248999699983104177999999756578877454888799986657888999638987717799999999977988
Q ss_pred EEEEECCC-CCCCEE----------EEEECCCCCCCCC-CEEECCCCCCHHH
Q ss_conf 34330367-887348----------9840553212222-1033057641023
Q gi|254780654|r 116 RVLVSAPC-KGVKKT----------IVYGVNHQSLNKE-DKVVSNASCTTNC 155 (333)
Q Consensus 116 kVIiSaP~-kd~~~t----------iV~GvN~~~~~~~-~~IiS~aSCTtn~ 155 (333)
|..+-|- .|-... ++||.+-...+.+ .+..+-+|+.-.-
T Consensus 158 -v~~~tpeEHDr~MavVQ~LtHF~~i~~G~~L~~~~vDi~~~l~fsSPiYrL 208 (441)
T PRK08655 158 -VIITTPEEHDRIMSVVQGLTHFAYISIGSTLKRLGIDIKESRKFASPIYEL 208 (441)
T ss_pred -EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf -999488998676099999999999999999988199999997537908999
No 252
>KOG0455 consensus
Probab=33.43 E-value=37 Score=15.01 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=52.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC------CCEEEEEECCCCCHHHHHHHHHHCCCC----CCCCCE-EEEECCCCCCCC
Q ss_conf 189885668688999999996888------872899960688999999887514412----556740-898365300165
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRR------DDVRIVAINDLNSIETMAHLLRYDSVH----GRFPGE-VKIIGDTIDVGL 71 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~------~~i~ivaINd~~~~~~~~~Ll~yDS~h----G~~~~~-v~~~~~~l~in~ 71 (333)
+.|++.|-|-+||.++.++..-+. -.|++|++-|.-. ++.--|-.. ..|..+ ++..+..+..+.
T Consensus 4 vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~-----~~~skD~~p~nl~sewk~~L~~st~~alsLda 78 (364)
T KOG0455 4 VNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES-----LVASKDVLPENLNSEWKSELIKSTGSALSLDA 78 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-----CCCCCCCCHHHHCHHHHHHHHHHCCCCCCHHH
T ss_conf 2089994560679999999877643116716999999941313-----50434457001045999999873378555899
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCC
Q ss_conf 654211012333334465632786066433321220011058423433036788
Q gi|254780654|r 72 GPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKG 125 (333)
Q Consensus 72 ~~i~i~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd 125 (333)
- |.... ..|. --+++|||--.-..+-..++++.|+ -|..|-|-
T Consensus 79 L-ia~L~-~sp~------p~ilVDntaS~~ia~~y~Kfv~~gi---~IatpNKK 121 (364)
T KOG0455 79 L-IAKLL-GSPT------PLILVDNTASMEIAEIYMKFVDLGI---CIATPNKK 121 (364)
T ss_pred H-HHHHC-CCCC------CEEEEECCCHHHHHHHHHHHHHCCC---EEECCCCC
T ss_conf 9-99970-8998------5499816517999999999986481---48348865
No 253
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=32.99 E-value=37 Score=14.97 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=28.9
Q ss_pred EC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 56-686889999999968888728999606889999998875
Q gi|254780654|r 8 NG-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 8 NG-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
-| -|-||++.+..+-.. ++.|+|+++.--.+.+.++...+
T Consensus 2 LGSTGSIG~~tL~Vi~~~-~~~f~V~~Lsa~~n~~~L~~q~~ 42 (392)
T PRK12464 2 LGSTGSIGTSTLDVVAAH-PERFKVVALTANYNIELLVQQIK 42 (392)
T ss_pred CCCCCHHHHHHHHHHHHC-CCCEEEEEEEECCCHHHHHHHHH
T ss_conf 595759899999999948-68708999993887999999999
No 254
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=32.88 E-value=38 Score=14.95 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCEEEEEEC----CCHHHHHHHHHHHHCCC-CCE-----EEEEECCC
Q ss_conf 961898856----68688999999996888-872-----89996068
Q gi|254780654|r 1 MVCKVAING----FGRIGRCILRAAVESRR-DDV-----RIVAINDL 37 (333)
Q Consensus 1 M~ikIgING----fGRIGR~v~R~~~~~~~-~~i-----~ivaINd~ 37 (333)
|++||-+.+ ||+=.+.++..+-+-.. .+| ..+|++|+
T Consensus 1 m~~ki~v~~l~kvfg~~~~~a~~~~~~g~~k~ei~~~tg~~vAv~dV 47 (400)
T PRK10070 1 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDA 47 (400)
T ss_pred CCCEEEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECC
T ss_conf 97459995479932989899999987699989999864999989740
No 255
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=32.48 E-value=21 Score=16.58 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCE---EEECCCCEEECCCE
Q ss_conf 8899998741000048574225873544348878621---68326846428977
Q gi|254780654|r 255 EINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSS---IFAADQTKVVSQNL 305 (333)
Q Consensus 255 ~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~---i~D~~~t~v~~~~~ 305 (333)
.|..+++++- ..++++-..|=.-+++||.|+|.|+ |.|..|.....++.
T Consensus 405 rii~~l~~a~--~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhy 456 (784)
T PRK10787 405 KLIQKMAKVG--VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHY 456 (784)
T ss_pred HHHHHHHHHC--CCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCE
T ss_conf 8999999748--988566500355522455899889999845976556400032
No 256
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit; InterPro: IPR012792 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the CoA-binding A subunit of family I CoA-transferases. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is an all parallel beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=32.22 E-value=38 Score=14.89 Aligned_cols=50 Identities=32% Similarity=0.445 Sum_probs=39.3
Q ss_pred EEEEECCCHHHH--HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 898856686889--99999996888872899960688999999887514412
Q gi|254780654|r 4 KVAINGFGRIGR--CILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH 53 (333)
Q Consensus 4 kIgINGfGRIGR--~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~h 53 (333)
.|-|-|||-+|. -++.++++.-..++.||.=|--...--++.||+--.|.
T Consensus 21 Ti~igGFG~~G~P~eLi~aLi~~g~k~LTivsNNAG~G~~GLa~Ll~ag~V~ 72 (222)
T TIGR02429 21 TILIGGFGTAGLPEELIDALIETGAKDLTIVSNNAGNGEIGLAALLKAGQVR 72 (222)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEE
T ss_conf 6986277988875899999997067777788637788036899998349702
No 257
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=32.02 E-value=39 Score=14.86 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=23.1
Q ss_pred EEEEECCCCCCCCC---CCCCCCCCCCCCC-CCCCCCEEEEECCCCC
Q ss_conf 08983653001656---5421101233333-4465632786066433
Q gi|254780654|r 59 EVKIIGDTIDVGLG---PIQVTSIRDPQDL-PWGDVDVAMECTGFFV 101 (333)
Q Consensus 59 ~v~~~~~~l~in~~---~i~i~~~~~p~~i-~W~~vDiViEcTG~f~ 101 (333)
.+..+.-.|.|+|. ++.++ -.+.... |-..+-.++||+|-=+
T Consensus 59 ~id~~~~~L~I~G~V~~p~~lt-l~dL~~~~p~~~v~a~lqCaGN~R 104 (367)
T cd02114 59 DIDPDAYTLTIDGKVRTPLTLS-LAELKRIEPRFEVVAVNQCSGNSR 104 (367)
T ss_pred CCCCCCCEEEEEEEECCCEEEE-HHHHHHCCCCEEEEEEEECCCCCC
T ss_conf 5470132999930408973878-999762289659999996178874
No 258
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=31.80 E-value=39 Score=14.84 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=67.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 1898856686889999999968888728999606889--99999887514412556740898365300165654211012
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS--IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
-||+|-|-|++|-.+...+....-. +++-+ |+.. .+-.+-=|.+-+.. +. ...++....
T Consensus 8 ~KV~IIGaG~VG~~~A~~l~~~~l~--eivLi-Di~~~~a~g~a~Dl~h~~~~--~~--------------~~~~v~~~~ 68 (322)
T PTZ00082 8 KKISLIGSGNIGGVMAYLIQLKNLA--DVVLF-DIVPNIPAGKALDIMHANVM--AG--------------SNCKVIGTN 68 (322)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCC--EEEEE-ECCCCCCHHHHHHHHCCCCC--CC--------------CCCEEEECC
T ss_conf 8299989698999999999638997--79999-78898008899987663644--68--------------885798379
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCC-----CH---------------HH-HCC--CCEEEEECCCCCCCEEEEEECCC-
Q ss_conf 33333446563278606643332122-----00---------------11-058--42343303678873489840553-
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKA-----SL---------------HL-SNG--SQRVLVSAPCKGVKKTIVYGVNH- 136 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~-----~~---------------HL-~~G--akkVIiSaP~kd~~~tiV~GvN~- 136 (333)
+.+++ ++.|+|+=+.|.-+..... +. -+ +.+ +.-+++|-|. |.- +.+ +..
T Consensus 69 dy~~~--~~aDiVVitAG~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~p~aiiivvsNPv-Dv~-t~~--~~k~ 142 (322)
T PTZ00082 69 SYDDI--AGSDVVIVTAGLAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYCPNAFVIVITNPL-DVM-VQL--LLKV 142 (322)
T ss_pred CHHHH--CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCH-HHH-HHH--HHHH
T ss_conf 99997--79999998988877899987656788999988999999999987409983599748926-999-999--9997
Q ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 2122221033057641023466888754121023221
Q gi|254780654|r 137 QSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGY 173 (333)
Q Consensus 137 ~~~~~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~ 173 (333)
..| |.++||..+.. -=-+=+-..|.++++|.-..
T Consensus 143 sg~-p~~rViG~Gt~--LDsaR~r~~ia~~l~v~~~~ 176 (322)
T PTZ00082 143 SGF-PKNKVVGMGGV--LDSSRMKYYIAQKLGVNPRD 176 (322)
T ss_pred HCC-CCCCEEEECCH--HHHHHHHHHHHHHHCCCHHH
T ss_conf 689-82248964123--88899999999984988777
No 259
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.72 E-value=22 Score=16.51 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCEEEE-ECCCCC
Q ss_conf 5632786066433321220011058423433-036788
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASLHLSNGSQRVLV-SAPCKG 125 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~HL~~GakkVIi-SaP~kd 125 (333)
.+.+-++--|-.++.+.++..|+.||.||++ |+..++
T Consensus 76 ~~~~pi~vGGGIrs~~~~~~~l~~Gadkvvigs~~~~~ 113 (233)
T cd04723 76 AWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHCCC
T ss_conf 78998899702276999999986072015245100499
No 260
>pfam00658 PABP Poly-adenylate binding protein, unique domain. The region featured in this family is found towards the C-terminus of poly(A)-binding proteins (PABPs). These are eukaryotic proteins that, through their binding of the 3' poly(A) tail on mRNA, have very important roles in the pathways of gene expression. They seem to provide a scaffold on which other proteins can bind and mediate processes such as export, translation and turnover of the transcripts. Moreover, they may act as antagonists to the binding of factors that allow mRNA degradation, regulating mRNA longevity. PABPs are also involved in nuclear transport. PABPs interact with poly(A) tails via RNA-recognition motifs (pfam00076). Note that the PABP C-terminal region is also found in members of the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains - these are also included in this family.
Probab=31.23 E-value=13 Score=18.06 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=17.0
Q ss_pred HHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7777620178710434312335
Q gi|254780654|r 215 VELVLPNLKGKLDGSSIRVPTP 236 (333)
Q Consensus 215 i~~vlP~l~gkl~g~a~RVPt~ 236 (333)
|...-|+++|||+||=+-.|..
T Consensus 27 V~~~~p~~AgKITGMLLEm~~~ 48 (71)
T pfam00658 27 IQAIEPELAGKITGMLLEMDNS 48 (71)
T ss_pred HHHHCHHHHHHHHHHHHCCCHH
T ss_conf 9987823320066877548889
No 261
>TIGR02349 DnaJ_bact chaperone protein DnaJ; InterPro: IPR012724 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold . DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation . Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. DnaJ comprises a 70-residue N-terminal domain (the J-domain); a 30-residue glycine-rich region (the G-domain); a central domain containing 4 repeats of a CxxCxGxG motif (the CRR-domain); and a 120-170 residue C-terminal region. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins , either together or separately. This entry mostly consists of bacterial forms of DnaJ. The three components of the DnaK-DnaJ-GrpE system are typically encoded by consecutive genes. DnaJ homologues occur in many genomes, typically not encoded near DnaK and GrpE-like genes. Most such proteins are not included in this family, though some chloroplast homologues are included; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0009408 response to heat.
Probab=31.17 E-value=28 Score=15.77 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=8.5
Q ss_pred CEEEEEC----CCCCCCCCCCHH
Q ss_conf 3278606----643332122001
Q gi|254780654|r 91 DVAMECT----GFFVTQEKASLH 109 (333)
Q Consensus 91 DiViEcT----G~f~~~~~~~~H 109 (333)
..|.-.. |.|.....+..-
T Consensus 198 Gqv~~~~~t~fG~f~~~~tC~~C 220 (386)
T TIGR02349 198 GQVRRQQGTPFGFFQQQQTCPTC 220 (386)
T ss_pred EEEEEECCCEEEEEEEEEECCCC
T ss_conf 89999714065899985877885
No 262
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.98 E-value=40 Score=14.75 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=74.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888-8728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
.||+|-|-|++|-.+...+....- .++-++-||.- -++-.+.=|.+.+. | .+ ..++....+
T Consensus 4 ~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~-~a~g~a~Dl~h~~~---~------------~~--~~~v~~~~d 65 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVED-KLKGEAMDLQHGSA---F------------LK--NPKIEADKD 65 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHHHHHCCC---C------------CC--CCEEEECCC
T ss_conf 869998978889999999996699887999938898-33268888660401---2------------79--855993799
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHH-HHCC-----------------CCEEEEECCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 3333446563278606643332122001-1058-----------------423433036788734898405532122221
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLH-LSNG-----------------SQRVLVSAPCKGVKKTIVYGVNHQSLNKED 143 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~H-L~~G-----------------akkVIiSaP~kd~~~tiV~GvN~~~~~~~~ 143 (333)
.+++ ++.|+|+=+.|..+....-+.- |... +.-+++|-|. |. .+.++ -....| +.+
T Consensus 66 ~~~~--~~aDvVVitAG~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivvsNPv-Dv-~t~~~-~k~sg~-p~~ 139 (312)
T cd05293 66 YSVT--ANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV-DI-MTYVA-WKLSGL-PKH 139 (312)
T ss_pred HHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCH-HH-HHHHH-HHHCCC-CCC
T ss_conf 9996--899999988999999898889999988999999999988419984699668918-99-99999-996299-822
Q ss_pred EEECCCC-CCHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 0330576-410234668887541210232210011345
Q gi|254780654|r 144 KVVSNAS-CTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 144 ~IiS~aS-CTtn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
++|..+. -.+ +=+-..|.+++|+....+ |+|
T Consensus 140 rviG~gt~LDs---~R~~~~la~~l~v~~~~V---~~~ 171 (312)
T cd05293 140 RVIGSGCNLDS---ARFRYLIAERLGVAPSSV---HGW 171 (312)
T ss_pred CEEEEEEHHHH---HHHHHHHHHHHCCCHHHC---CCE
T ss_conf 67872041878---999999999969894435---244
No 263
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.92 E-value=40 Score=14.75 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=69.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 189885668688999999996888-8728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
|||+|-|-|.+|-.+...++.+.. .++-++-||.- -++-.+.=|.+=+ .| .+ ..++. ..+
T Consensus 1 mKI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~-~a~g~a~DL~~a~---~~-------------~~-~~~i~-~~~ 61 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA-KAEGEAMDLAHGT---PF-------------VK-PVRIY-AGD 61 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHHHHHHC---CC-------------CC-CCEEE-ECC
T ss_conf 979999948889999999986799887999918898-4512568766241---03-------------68-81684-099
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCH-H--------------HH-CC--CCEEEEECCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 333344656327860664333212200-1--------------10-58--423433036788734898405532122221
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASL-H--------------LS-NG--SQRVLVSAPCKGVKKTIVYGVNHQSLNKED 143 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~-H--------------L~-~G--akkVIiSaP~kd~~~tiV~GvN~~~~~~~~ 143 (333)
.+++ ++.|+|+=+.|.-+....-+. . +. .+ +.-+++|-|. |.--.+.+ ....| +.+
T Consensus 62 ~~~l--~daDvVVitaG~~rk~g~tR~dll~~Na~I~~~i~~~i~~~~p~~ivivvsNPv-Dv~t~~~~--k~sg~-p~~ 135 (308)
T cd05292 62 YADC--KGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV-DVLTYVAY--KLSGL-PPN 135 (308)
T ss_pred HHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HHHHHHHH--HHCCC-CCH
T ss_conf 9997--799999989999999899878999888999999999998419980899727954-78999999--97299-802
Q ss_pred EEECCCCC-CHHHHHHHHHHHHHCCCHHHHHC
Q ss_conf 03305764-10234668887541210232210
Q gi|254780654|r 144 KVVSNASC-TTNCLVPVVHVLDKMFGIEKGYM 174 (333)
Q Consensus 144 ~IiS~aSC-Ttn~laPvlk~l~~~~gI~~g~~ 174 (333)
++|..|.. .| +=+-+.|.+++++....+
T Consensus 136 rViG~gt~LDs---~R~~~~la~~l~v~~~~V 164 (308)
T cd05292 136 RVIGSGTVLDT---ARFRYLLGEHLGVDPRSV 164 (308)
T ss_pred HEEECCCHHHH---HHHHHHHHHHHCCCHHHC
T ss_conf 26602446889---999999999849980006
No 264
>pfam03858 Crust_neuro_H Crustacean neurohormone H. These proteins are referred to as precursor-related peptides as they are typically co-transcribed and translated with the CHH neurohormone (pfam01147). However, in some species this neuropeptide is synthesized as a separate protein. Furthermore, neurohormone H can undergo proteolysis to give rise to 5 different neuropeptides.
Probab=30.80 E-value=22 Score=16.45 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred ECCCHHHHHHHH
Q ss_conf 566868899999
Q gi|254780654|r 8 NGFGRIGRCILR 19 (333)
Q Consensus 8 NGfGRIGR~v~R 19 (333)
-||||.+|++.-
T Consensus 4 ~G~GRMeRLLas 15 (41)
T pfam03858 4 EGYGRMERLLAS 15 (41)
T ss_pred CHHHHHHHHHHH
T ss_conf 014069999999
No 265
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=30.74 E-value=41 Score=14.73 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=21.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 18988566868899999999688887289996
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 34 (333)
|||+|-|.|.+|-...-.+.+ + +++|+.+
T Consensus 1 MkI~ViGlGyVGl~~a~~lA~-~--G~~V~g~ 29 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD-L--GHEVTGV 29 (411)
T ss_pred CEEEEECCCHHHHHHHHHHHH-C--CCCEEEE
T ss_conf 979998978779999999994-8--9948999
No 266
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.73 E-value=41 Score=14.72 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=35.5
Q ss_pred EEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 984055321222210330576410234668887541210232210011345322235566
Q gi|254780654|r 130 IVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDA 189 (333)
Q Consensus 130 iV~GvN~~~~~~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~t~~Q~l~D~ 189 (333)
++.|.|-..|-.+..= + ..-|+-+++-|.+--|+..--++++||+--+-.+++.
T Consensus 194 ~L~gqdv~aYG~D~~~---~---~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lIe~ 247 (437)
T COG0621 194 VLTGQDVNAYGKDLGG---G---KPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEA 247 (437)
T ss_pred EEEEEEHHHCCCCCCC---C---CCCHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHH
T ss_conf 9998811010446777---7---6689999999960799108999358800118899999
No 267
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.46 E-value=41 Score=14.70 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 1898856-68688999999996888-872899960688999999887514412556740898365300165654211012
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIR 80 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~ 80 (333)
|||+|-| -|++|-.+.-.+..+.. .++-++-|| ..+-.+-=|. |......+... ....
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~---~~~g~a~DL~----h~~~~~~v~~~-------------~~~~ 60 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---NTPGVAADLS----HINTPAKVTGY-------------LGPE 60 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC---CCHHHHHHHH----CCCCCCCEEEE-------------ECCC
T ss_conf 98999999981899999999729997769998277---4266755321----65656851257-------------0887
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCHHH-HC---------------C--CCEEEEECCCCCCCEE-EEEEC--CCCCC
Q ss_conf 333334465632786066433321220011-05---------------8--4234330367887348-98405--53212
Q gi|254780654|r 81 DPQDLPWGDVDVAMECTGFFVTQEKASLHL-SN---------------G--SQRVLVSAPCKGVKKT-IVYGV--NHQSL 139 (333)
Q Consensus 81 ~p~~i~W~~vDiViEcTG~f~~~~~~~~HL-~~---------------G--akkVIiSaP~kd~~~t-iV~Gv--N~~~~ 139 (333)
+..+ .-+|.|+|+=+.|.-+..-.-+.-| +. + +.-+++|-|. |. .+ +.+-+ .-..|
T Consensus 61 ~~~~-~l~daDiVVitAG~~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~p~aiiivvtNPv-D~-lt~i~~~~~k~~~~~ 137 (310)
T cd01337 61 ELKK-ALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV-NS-TVPIAAEVLKKAGVY 137 (310)
T ss_pred CHHH-HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCH-HH-HHHHHHHHHHHHCCC
T ss_conf 4667-74799999987898899798989998740788999999998209984999970834-77-999999999981799
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 22210330576410234668887541210232210011345
Q gi|254780654|r 140 NKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 (333)
Q Consensus 140 ~~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TTiH~~ 180 (333)
++ ++||.. |+=--|=+-..|.+++|+.... ||+|
T Consensus 138 p~-~rViG~---T~LDsaR~r~~la~~l~v~~~~---V~a~ 171 (310)
T cd01337 138 DP-KRLFGV---TTLDVVRANTFVAELLGLDPAK---VNVP 171 (310)
T ss_pred CC-CCEEEE---EEHHHHHHHHHHHHHHCCCHHH---CEEE
T ss_conf 81-207876---5088899999999995978777---0667
No 268
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.67 E-value=42 Score=14.61 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=66.7
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCC----CCEEEEEECCCCC----HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 18988566-8688999999996888----8728999606889----9999988751441255674089836530016565
Q gi|254780654|r 3 CKVAINGF-GRIGRCILRAAVESRR----DDVRIVAINDLNS----IETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP 73 (333)
Q Consensus 3 ikIgINGf-GRIGR~v~R~~~~~~~----~~i~ivaINd~~~----~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~ 73 (333)
|||.|-|= |.||..+.-.+...+- .++.+ ..-|+.. .+-++-=| .|+.+..+. .+....
T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l-~L~Di~~~~~~~~G~~mdl-~~~a~~~~~-~v~~~~--------- 68 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVIL-HLLDIPPAMKALEGVVMEL-QDCAFPLLK-GVVITT--------- 68 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEE-EEECCCCCCCCCHHHHHHH-HHCCCCCCC-CEEECC---------
T ss_conf 9899989997899999999972863699860089-9975888655531487866-534665558-748428---------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCC-------------------CCCCHHHHCCCCEEEEECCCCCCCEEEEEEC
Q ss_conf 421101233333446563278606643332-------------------1220011058423433036788734898405
Q gi|254780654|r 74 IQVTSIRDPQDLPWGDVDVAMECTGFFVTQ-------------------EKASLHLSNGSQRVLVSAPCKGVKKTIVYGV 134 (333)
Q Consensus 74 i~i~~~~~p~~i~W~~vDiViEcTG~f~~~-------------------~~~~~HL~~GakkVIiSaP~kd~~~tiV~Gv 134 (333)
+ ..-+.++.|+||=+.|.-+.. +...+|-..+++=+++|-|. |....+++
T Consensus 69 -------~-~~~~~~~aDvViitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvsNPv-D~~~~v~~-- 137 (323)
T cd00704 69 -------D-PEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA-NTNALIAL-- 137 (323)
T ss_pred -------C-HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHH--
T ss_conf -------8-589837998899827878899982799998748999999999985179983899957864-68999999--
Q ss_pred CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 53212222103305764102346688875412102322100
Q gi|254780654|r 135 NHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMT 175 (333)
Q Consensus 135 N~~~~~~~~~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~T 175 (333)
.....-+..+|.+.+.-.+ +-.-..|.+++++....+.
T Consensus 138 k~sg~~~~~~i~~~t~LDs---aR~r~~la~~l~v~~~~V~ 175 (323)
T cd00704 138 KNAPNLPPKNFTALTRLDH---NRAKAQVARKLGVRVSDVK 175 (323)
T ss_pred HHCCCCCCCEEEEEEEHHH---HHHHHHHHHHHCCCHHHCE
T ss_conf 9769998247999652799---9999999999783978927
No 269
>KOG4169 consensus
Probab=29.09 E-value=43 Score=14.55 Aligned_cols=39 Identities=28% Similarity=0.483 Sum_probs=28.2
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHH
Q ss_conf 885668688999999996888872899960688-999999887
Q gi|254780654|r 6 AINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLL 47 (333)
Q Consensus 6 gINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~~~Ll 47 (333)
-.-|+|-|||.+..++++. ++.+.+|-|.- .++..+.|-
T Consensus 10 vtggagGIGl~~sk~Ll~k---gik~~~i~~~~En~~a~akL~ 49 (261)
T KOG4169 10 VTGGAGGIGLATSKALLEK---GIKVLVIDDSEENPEAIAKLQ 49 (261)
T ss_pred EECCCCHHHHHHHHHHHHC---CCHHEEEHHHHHCHHHHHHHH
T ss_conf 9637863669999999976---715406104014789999886
No 270
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=29.05 E-value=43 Score=14.54 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEECCCHHHH-HHHHHHHHCCCCCEEE-EEECCCCCHHHHH-HHHHHCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 8856686889-9999999688887289-9960688999999-88751441255674-08983653001656542110123
Q gi|254780654|r 6 AINGFGRIGR-CILRAAVESRRDDVRI-VAINDLNSIETMA-HLLRYDSVHGRFPG-EVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 6 gINGfGRIGR-~v~R~~~~~~~~~i~i-vaINd~~~~~~~~-~Ll~yDS~hG~~~~-~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
-|-||===|+ .+++.+++++. +-++ |-+|++++...-. -++. .... -++..+++++..-+.-.+-....
T Consensus 5 vitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~------~~~e~~~El~nGCICCT~r~dl~~~~~~ 77 (323)
T COG0523 5 VITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDGGALLS------DTGEEVVELTNGCICCTVRDDLLPALER 77 (323)
T ss_pred EEEECCCCCHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCCCCCC------CCCCCEEEECCCCEEEECCCHHHHHHHH
T ss_conf 9811677998999999985458-98079998557402216776413------4897579836970787034215899999
Q ss_pred CCCCCCCCCC-EEEEECCCCCCCCCCCHHHH
Q ss_conf 3333446563-27860664333212200110
Q gi|254780654|r 82 PQDLPWGDVD-VAMECTGFFVTQEKASLHLS 111 (333)
Q Consensus 82 p~~i~W~~vD-iViEcTG~f~~~~~~~~HL~ 111 (333)
..+. -+..| ++||+||.---..-++..+.
T Consensus 78 L~~~-~~~~D~ivIEtTGlA~P~pv~~t~~~ 107 (323)
T COG0523 78 LLRR-RDRPDRLVIETTGLADPAPVIQTFLT 107 (323)
T ss_pred HHHC-CCCCCEEEEECCCCCCCHHHHHHHHC
T ss_conf 9852-56899899968877786999998606
No 271
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR010136 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry represents bacterial N-acetyl-gamma-glutamyl-phosphate reductases, an enzyme catalysing the third step of arginine biosynthesis from glutamate.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=28.94 E-value=44 Score=14.53 Aligned_cols=243 Identities=18% Similarity=0.281 Sum_probs=135.3
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECC--CCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC----CCCC
Q ss_conf 1898856-686889999999968888728999606--88999999887514412556740898365300165----6542
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAIND--LNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGL----GPIQ 75 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd--~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~----~~i~ 75 (333)
=||-|-| =|=-|-.+.-.+-+ |.|||++.|.. ..|.+.+|.||+ | .+|. -|+.-+ -.|.
T Consensus 2 pKvFiDGeaGTTGLqi~~rL~~--R~DleLlsI~~~rRKDa~~RA~lLN--a------aDva----iLCLPDdAarEAVS 67 (314)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSG--RDDLELLSIAPDRRKDAAERAKLLN--A------ADVA----ILCLPDDAAREAVS 67 (314)
T ss_pred CCEEECCCCCCHHHHHHHHHCC--CCCHHEEEECCCCCCCHHHHHHHHH--H------HHHH----HHCCCCHHHHHCEE
T ss_conf 9536417888626789886247--7620003106332679799887754--6------7323----33486245543000
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEECCC------CCCCCCCEEECCC
Q ss_conf 1101233333446563278606643332122001105842343303678873489840553------2122221033057
Q gi|254780654|r 76 VTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNH------QSLNKEDKVVSNA 149 (333)
Q Consensus 76 i~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVIiSaP~kd~~~tiV~GvN~------~~~~~~~~IiS~a 149 (333)
+. .+|. -.+||+|=.||+.+. =|||.-| +++. ..+-|||.
T Consensus 68 Lv--~np~-------~~ilDASTAyRt~~d------------------------W~YGfpEL~~eQREki~-~sk~vanP 113 (314)
T TIGR01851 68 LV--DNPN-------TKILDASTAYRTADD------------------------WVYGFPELAPEQREKIR-NSKRVANP 113 (314)
T ss_pred CC--CCCC-------CEEEECCCCCCCCCC------------------------CCCCCCCCCCCCCHHHH-HCCEECCC
T ss_conf 02--6877-------247515400004877------------------------41146457877524676-05541189
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHC-CCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---------
Q ss_conf 6410234668887541210232210-0113453222----3556654530001123656464531124567---------
Q gi|254780654|r 150 SCTTNCLVPVVHVLDKMFGIEKGYM-TTVHSYTGDQ----HVLDAGHSDLYRSRAAAISMVPTSTGAAKAV--------- 215 (333)
Q Consensus 150 SCTtn~laPvlk~l~~~~gI~~g~~-TTiH~~t~~Q----~l~D~~~~d~Rr~Raa~~niIPt~Tgaa~ai--------- 215 (333)
-|=..+..-++..|=++ ||.=+.+ -|+.+++.|- .+++.+ ..+...-+....--|-..=+-.--
T Consensus 114 GCY~tg~~aL~rPLv~~-GilPA~fPv~~~a~sGYsGGGk~li~~y-~sfh~~~a~~~~~~~f~~YgL~L~HKHlpEm~~ 191 (314)
T TIGR01851 114 GCYPTGFIALLRPLVEA-GILPADFPVTINAVSGYSGGGKALIAKY-ESFHEESADNSKKQPFIIYGLALEHKHLPEMRV 191 (314)
T ss_pred CCCHHHHHHHHHHHHHC-CCCCCCCCEEEEEECCCCCHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 85178999997438765-7776557634556315443158999988-645554125533578732111123774533320
Q ss_pred -------HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC-
Q ss_conf -------777620178710434312335310112343320122067889999874100004857422587354434887-
Q gi|254780654|r 216 -------ELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHT- 287 (333)
Q Consensus 216 -------~~vlP~l~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~- 287 (333)
+-..|..=+=..||.+.||-+= -+|..++|.++|-++|++.=+|+. ++.+-+-. =...
T Consensus 192 ~sgL~~~PiFtP~VG~f~qGm~V~iPLHL-------~~L~~~vS~~~ih~al~~yY~Ge~--Fv~Va~~~-----~~~~L 257 (314)
T TIGR01851 192 HSGLALPPIFTPAVGNFAQGMLVTIPLHL-------ATLDSKVSAADIHAALAEYYQGEQ--FVKVAPLD-----DAETL 257 (314)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEECCCCH-------HHHCCCCCHHHHHHHHHHHHCCCC--EEEEECCC-----CCHHH
T ss_conf 36556888012565730066067638855-------762789898999999999717774--38861244-----70000
Q ss_pred CCCEEEECCCCEEECCCEEEEEEE
Q ss_conf 862168326846428977999998
Q gi|254780654|r 288 SYSSIFAADQTKVVSQNLLRVLVW 311 (333)
Q Consensus 288 ~~s~i~D~~~t~v~~~~~~Ki~~W 311 (333)
....++|.+. +-+-|.++++.+
T Consensus 258 ~~G~~LD~~g--~NgTN~~~lFVF 279 (314)
T TIGR01851 258 DDGTFLDPQG--LNGTNRLELFVF 279 (314)
T ss_pred CCCCEECCCC--CCCCCEEEEEEE
T ss_conf 1685116023--788414778871
No 272
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=28.85 E-value=28 Score=15.81 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCEEEEEC-CCCC
Q ss_conf 63278606643332122001105842343303-6788
Q gi|254780654|r 90 VDVAMECTGFFVTQEKASLHLSNGSQRVLVSA-PCKG 125 (333)
Q Consensus 90 vDiViEcTG~f~~~~~~~~HL~~GakkVIiSa-P~kd 125 (333)
+.+=+.--|-.++.+.++..|+.||.||++.. ..++
T Consensus 72 ~~~pi~vgGGIrs~e~~~~~l~~Ga~kvvigs~~~~~ 108 (229)
T pfam00977 72 VFIPVQVGGGIRSLEDAERLLSAGADKVIIGTAAVKN 108 (229)
T ss_pred CCCCEEEECCEEEHHHHHHHHHCCCCEEEECCCHHHC
T ss_conf 6987899645611899999997699899958604309
No 273
>KOG1403 consensus
Probab=28.63 E-value=24 Score=16.21 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=10.6
Q ss_pred CCEEEEE-ECCCCCHHHHHHHHHHC
Q ss_conf 8728999-60688999999887514
Q gi|254780654|r 27 DDVRIVA-INDLNSIETMAHLLRYD 50 (333)
Q Consensus 27 ~~i~iva-INd~~~~~~~~~Ll~yD 50 (333)
|++.++. +|.-+....+|--|.+|
T Consensus 100 PeLsvc~F~NSGSEANDLALRLAR~ 124 (452)
T KOG1403 100 PELSVCFFVNSGSEANDLALRLARN 124 (452)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 7851899966886155899999875
No 274
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=28.61 E-value=44 Score=14.49 Aligned_cols=102 Identities=22% Similarity=0.103 Sum_probs=52.4
Q ss_pred EEEEEECCCHHHHH-HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEC--CCCCCCCCCCCCCCC
Q ss_conf 18988566868899-999999688887289996068899999988751441255674089836--530016565421101
Q gi|254780654|r 3 CKVAINGFGRIGRC-ILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIG--DTIDVGLGPIQVTSI 79 (333)
Q Consensus 3 ikIgINGfGRIGR~-v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~--~~l~in~~~i~i~~~ 79 (333)
++|||-|-||.||. ++|+.- ...+.-+|... +++-... | --+|+--+.++.... ..+.+-..+-..+.+
T Consensus 11 ~~v~~igtGrl~ra~~~ra~h----~~~~cs~i~sr-S~~~a~~-L--aE~~~a~p~d~~~~ael~~~vfv~vpd~~~~~ 82 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADH----VVVACSAISSR-SRDRAQN-L--AETYVAPPLDVAKSAELLLLVFVDVPDALYSG 82 (289)
T ss_pred EEEEEEECCHHHHHHHHHHHH----HHEEEHHHHHC-CHHHHHH-H--HHHCCCCCCCHHHCHHHHCEEEECCCHHHHHH
T ss_conf 588876044278999987400----32121134321-7899862-0--44217995101207345154786260888888
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCC
Q ss_conf 23333344656327860664333212200110584
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGS 114 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~Ga 114 (333)
-....-|..=-+|+-|||. ...+-+.+-=+.|+
T Consensus 83 -vaa~~~~rpg~iv~HcSga-~~~~il~~~gr~g~ 115 (289)
T COG5495 83 -VAATSLNRPGTIVAHCSGA-NGSGILAPLGRQGC 115 (289)
T ss_pred -HHHHCCCCCCEEEEECCCC-CCHHHHHHHHHCCC
T ss_conf -8876046898389974688-74045425421587
No 275
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=27.79 E-value=46 Score=14.40 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=17.7
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 898856-6868899999999688
Q gi|254780654|r 4 KVAING-FGRIGRCILRAAVESR 25 (333)
Q Consensus 4 kIgING-fGRIGR~v~R~~~~~~ 25 (333)
+|-|-| -|=||..+.|+++++.
T Consensus 6 ~ILVTGGaGfIGS~lv~~Ll~~~ 28 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENY 28 (324)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99990797799999999999729
No 276
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=27.78 E-value=34 Score=15.21 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=54.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH---CCCCCCCCCEEEEECCCC-CCCCC-CCCCC
Q ss_conf 18988566868899999999688887289996068899999988751---441255674089836530-01656-54211
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRY---DSVHGRFPGEVKIIGDTI-DVGLG-PIQVT 77 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~y---DS~hG~~~~~v~~~~~~l-~in~~-~i~i~ 77 (333)
-||.|-|.|=+|--+...+...-=..+.++- +|.-++.++..-+-| ++--|+.+.+ .....| .+|-. +|..+
T Consensus 20 s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD-~D~Ve~sNL~RQ~l~~~~~~diG~~Ka~--~a~~~l~~lNp~v~i~~~ 96 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVD-HRLVSTEDLGSNFFLDAEVSNSGMNRAA--ASYEFLQELNPNVKLSIV 96 (198)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCEEECCCCCCCCCCHHH--HHHHHHHHHCCCCEEEEE
T ss_conf 9899987788999999999974998699995-9963533577575026541116872999--999999977999779998
Q ss_pred CCC---CCCCC-C-CCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 012---33333-4-465632786066433321220011
Q gi|254780654|r 78 SIR---DPQDL-P-WGDVDVAMECTGFFVTQEKASLHL 110 (333)
Q Consensus 78 ~~~---~p~~i-~-W~~vDiViEcTG~f~~~~~~~~HL 110 (333)
.+. +.++. + .++.|+|++||-.|.++-......
T Consensus 97 ~~~~~~~~~n~~~~~~~~DlVvd~~dn~~~r~~in~~c 134 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVC 134 (198)
T ss_pred ECCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH
T ss_conf 22445778689999848999999999999999999999
No 277
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=27.74 E-value=46 Score=14.39 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=49.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 18988566868899999999688887289996068-89999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDL-NSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~-~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
-||-+-|.|-+|+++++.+.+..-.++ .-.|-. ...+.++.-+ +++.+.+. .-
T Consensus 179 ~~vLviGaGem~~l~~~~L~~~g~~~i--~v~nRt~~ra~~la~~~----------------------g~~~~~~~--~l 232 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEI--TIANRTYERAEELAKEL----------------------GGNAVPLD--EL 232 (311)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEE--EEECCCHHHHHHHHHHC----------------------CCEEECHH--HH
T ss_conf 679998687999999999996599825--99768678999999974----------------------98997299--99
Q ss_pred CCCCCCCCCCEEEEECCCCCC---CCCCCHHHHCCCCEEEE--ECCCCCCCEEE
Q ss_conf 333344656327860664333---21220011058423433--03678873489
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVT---QEKASLHLSNGSQRVLV--SAPCKGVKKTI 130 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~---~~~~~~HL~~GakkVIi--SaP~kd~~~ti 130 (333)
++.+ .+.|+||=|||.-.- .+.+... ..+-+.+|+ +-| .|.+|.+
T Consensus 233 ~~~l--~~~DvvisaT~s~~~~~~~~~~~~~-~~~~~~~iiDLavP-Rdid~~v 282 (311)
T cd05213 233 LELL--NEADVVISATGAPHYAKIVERAMKK-RSGKPRLIVDLAVP-RDIEPEV 282 (311)
T ss_pred HHHH--HHCCEEEEECCCCCCHHHHHHHHHH-CCCCCEEEEEECCC-CCCCHHH
T ss_conf 9999--7689999927999620359999753-47997699991799-9877334
No 278
>COG0246 MtlD Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.55 E-value=46 Score=14.37 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCEEEEEECCCHHHHH----HHHHHHHCCCC--CEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9618988566868899----99999968888--72899960688999999887514412
Q gi|254780654|r 1 MVCKVAINGFGRIGRC----ILRAAVESRRD--DVRIVAINDLNSIETMAHLLRYDSVH 53 (333)
Q Consensus 1 M~ikIgINGfGRIGR~----v~R~~~~~~~~--~i~ivaINd~~~~~~~~~Ll~yDS~h 53 (333)
|..+|.=.|+|.|||. ++-.+++.... +|..|-+|+ .+...-|=++|+.|
T Consensus 14 ~~~~ivHFG~Gnf~Rahqa~~i~~ll~~~~~~~~I~~v~~~~---~~~~d~L~~Qd~ly 69 (473)
T COG0246 14 MKPGIVHFGAGNFHRAHQAVFIDDLLAEGGFNDGIVFVDLND---DDVRDALNAQDGLY 69 (473)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC---HHHHHHHHHCCCCE
T ss_conf 677728962842411289999999996489877669995784---44689874058826
No 279
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=26.25 E-value=42 Score=14.62 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=6.9
Q ss_pred HHCCCCEEEEECCC
Q ss_conf 10584234330367
Q gi|254780654|r 110 LSNGSQRVLVSAPC 123 (333)
Q Consensus 110 L~~GakkVIiSaP~ 123 (333)
|+.| .||.||.|.
T Consensus 262 LKpG-DKv~~sGPf 274 (425)
T TIGR01941 262 LKPG-DKVTVSGPF 274 (425)
T ss_pred CCCC-CEEEEECCC
T ss_conf 4798-777997788
No 280
>KOG3896 consensus
Probab=25.79 E-value=43 Score=14.59 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0112365646453
Q gi|254780654|r 196 RSRAAAISMVPTS 208 (333)
Q Consensus 196 r~Raa~~niIPt~ 208 (333)
|-|-+-.|+|--.
T Consensus 264 RCr~CEhnLiKpe 276 (449)
T KOG3896 264 RCRECEHNLIKPE 276 (449)
T ss_pred EHHHHHHCCCCCC
T ss_conf 0555552345666
No 281
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.64 E-value=50 Score=14.15 Aligned_cols=143 Identities=16% Similarity=0.265 Sum_probs=66.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 89885668688999999996888-87289996068899999988751441255674089836530016565421101233
Q gi|254780654|r 4 KVAINGFGRIGRCILRAAVESRR-DDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 (333)
Q Consensus 4 kIgINGfGRIGR~v~R~~~~~~~-~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~p 82 (333)
||+|-|-|++|-.+...++.+.. .++-++-+|+-. .+..+- |--|+. .+.+.+.......+.
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~-a~g~a~----Dl~h~~------------~~~~~~~~~~~~~~y 63 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV-AEGEAL----DFHHAT------------ALTYSTNTKIRAGDY 63 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHH----HHHHHC------------CCCCCCCEEECCCCH
T ss_conf 989999698999999999856998879999288982-379999----876120------------358998658667998
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCC--CH---------------HH-HCC--CCEEEEECCCCCCCEEEEEECCCCCCCCC
Q ss_conf 333446563278606643332122--00---------------11-058--42343303678873489840553212222
Q gi|254780654|r 83 QDLPWGDVDVAMECTGFFVTQEKA--SL---------------HL-SNG--SQRVLVSAPCKGVKKTIVYGVNHQSLNKE 142 (333)
Q Consensus 83 ~~i~W~~vDiViEcTG~f~~~~~~--~~---------------HL-~~G--akkVIiSaP~kd~~~tiV~GvN~~~~~~~ 142 (333)
+++ ++.|+|+=+.|.-+....- +. -+ +.+ +.-+++|-|. |.. |.+. -....| +.
T Consensus 64 ~~~--~~aDiVVitaG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv-Dvm-t~~~-~k~sg~-p~ 137 (307)
T cd05290 64 DDC--ADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL-DIA-VYIA-ATEFDY-PA 137 (307)
T ss_pred HHH--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH-HHH-HHHH-HHHHCC-CC
T ss_conf 994--69999998677765899983588888857899999999986139974999847938-899-9999-998489-93
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 10330576410234668887541210232
Q gi|254780654|r 143 DKVVSNASCTTNCLVPVVHVLDKMFGIEK 171 (333)
Q Consensus 143 ~~IiS~aSCTtn~laPvlk~l~~~~gI~~ 171 (333)
+++|..| |+-=-+=+-+.|.+++|+..
T Consensus 138 ~rViG~G--t~LDsaR~r~~la~~l~v~~ 164 (307)
T cd05290 138 NKVIGTG--TMLDTARLRRIVADKYGVDP 164 (307)
T ss_pred CCEEECC--CHHHHHHHHHHHHHHHCCCC
T ss_conf 5787202--21778999999999849993
No 282
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=23.70 E-value=54 Score=13.91 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=49.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC------CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 618988566868899999999688------88728999606889999998875144125567408983653001656542
Q gi|254780654|r 2 VCKVAINGFGRIGRCILRAAVESR------RDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQ 75 (333)
Q Consensus 2 ~ikIgINGfGRIGR~v~R~~~~~~------~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~ 75 (333)
.+.|+|-|-|-||..+++|+.+.+ +-+++|++|-+.. ..||..|- +..+.-+-.
T Consensus 465 ~i~i~l~G~G~vG~~ll~qi~~q~~~l~~~~i~l~v~gianS~-----~~l~~~~G---------------i~l~~w~~~ 524 (817)
T PRK09436 465 VIDVFVIGVGGVGGALLEQIKRQQQWLKKKHIDLRVCGIANSR-----KMLLDEHG---------------IDLDNWREE 524 (817)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-----EEEECCCC---------------CCHHHHHHH
T ss_conf 4779998447287999999999999885269449999997576-----05766899---------------898999999
Q ss_pred CCCCCCCCCC----CCC---C--CCEEEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 1101233333----446---5--63278606643332122001105842
Q gi|254780654|r 76 VTSIRDPQDL----PWG---D--VDVAMECTGFFVTQEKASLHLSNGSQ 115 (333)
Q Consensus 76 i~~~~~p~~i----~W~---~--vDiViEcTG~f~~~~~~~~HL~~Gak 115 (333)
+.....|.++ .|- + --+++|||.--.-.+.....|++|..
T Consensus 525 l~~~~~~~~~~~~~~~~~~~~~~n~v~vD~Tas~~~~~~Y~~~l~~g~~ 573 (817)
T PRK09436 525 LAEAGEPFDLDRLIRLVKEYHLLNPVIVDCTSSAAVADQYADFLAAGFH 573 (817)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 9856787779999999996389884899888876889999999985996
No 283
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.42 E-value=55 Score=13.88 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=25.8
Q ss_pred EEEEEECCCHHHHHH-HHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 189885668688999-9999968888728999606889999998875
Q gi|254780654|r 3 CKVAINGFGRIGRCI-LRAAVESRRDDVRIVAINDLNSIETMAHLLR 48 (333)
Q Consensus 3 ikIgINGfGRIGR~v-~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~ 48 (333)
-||-+-|.|.+|..- .|.+.+ .+.+| ...|..+.....+|.+
T Consensus 9 k~ih~iGigG~GmsalA~~l~~---~G~~V-~gsD~~~~~~~~~L~~ 51 (459)
T PRK00421 9 KRIHFVGIGGIGMSGLAEVLLN---LGYKV-SGSDLKESAVTQRLLE 51 (459)
T ss_pred CEEEEEEECHHHHHHHHHHHHH---CCCEE-EEECCCCCHHHHHHHH
T ss_conf 8899998668889999999996---89939-9988989978999997
No 284
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=23.20 E-value=55 Score=13.85 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=27.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCC-CHHH
Q ss_conf 1898856686889999999968888-72899960688-9999
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLN-SIET 42 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~-~i~ivaINd~~-~~~~ 42 (333)
|+-.++|||.+=+.++...+++... +..| -|||++ .|..
T Consensus 44 I~Tsv~Gf~~~W~av~~~f~~~~~~~~~~i-~InD~GATP~V 84 (99)
T PRK01220 44 VVTSVNGSAARWKALFERFFTAQTPPAANI-DIHDFGATPGV 84 (99)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCCHH
T ss_conf 994455928999999999985078866379-99569998452
No 285
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=22.98 E-value=56 Score=13.82 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCC---CCCC-----------CC-EEEE---ECCCCCCC
Q ss_conf 66868899999999688887289996068899999988751441---2556-----------74-0898---36530016
Q gi|254780654|r 9 GFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSV---HGRF-----------PG-EVKI---IGDTIDVG 70 (333)
Q Consensus 9 GfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~---hG~~-----------~~-~v~~---~~~~l~in 70 (333)
|-|-|=|.+.|++-+..-+.-++|.+..++=...+.++++.|+. |||- |. .|-+ ++|.+.|+
T Consensus 23 G~g~Il~~l~~A~~elg~~~~~~vvvsGIGCS~r~~~Y~~~~~~ht~HGRala~AtGiK~AnPdl~Viv~~GDGD~~aIG 102 (281)
T PRK09628 23 GDGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVNCNTVHTTHGRAVAYATGIKLANPSKHVIVVSGDGDGLAIG 102 (281)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCEEHHHCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCH
T ss_conf 76899999999999819995548999478735303371763726311125088899999868997699981574042030
Q ss_pred CCCC
Q ss_conf 5654
Q gi|254780654|r 71 LGPI 74 (333)
Q Consensus 71 ~~~i 74 (333)
++..
T Consensus 103 gnH~ 106 (281)
T PRK09628 103 GNHT 106 (281)
T ss_pred HHHH
T ss_conf 8899
No 286
>TIGR02069 cyanophycinase cyanophycinase; InterPro: IPR011811 This entry describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.; GO: 0016787 hydrolase activity, 0044260 cellular macromolecule metabolic process.
Probab=22.76 E-value=55 Score=13.89 Aligned_cols=78 Identities=18% Similarity=0.448 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCC-------CCEEEEECCCCCCC-C--------------------CCCHHHHCCCCE
Q ss_conf 01656542110123---33334465-------63278606643332-1--------------------220011058423
Q gi|254780654|r 68 DVGLGPIQVTSIRD---PQDLPWGD-------VDVAMECTGFFVTQ-E--------------------KASLHLSNGSQR 116 (333)
Q Consensus 68 ~in~~~i~i~~~~~---p~~i~W~~-------vDiViEcTG~f~~~-~--------------------~~~~HL~~Gakk 116 (333)
+++=++|++..-.+ ..+..|.+ ...|=+|||+|-|- + .+++-...| |
T Consensus 65 vlGv~ev~il~~~~tPavDesRWR~~A~~~~~~~~~~~a~gIFFtGGDQlRits~l~tHqGGdTpl~~~lr~r~~~G--~ 142 (297)
T TIGR02069 65 VLGVKEVKILDVEETPAVDESRWREDASDEEAIALLSNATGIFFTGGDQLRITSLLGTHQGGDTPLLDRLRKRVEEG--K 142 (297)
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--E
T ss_conf 32200036873488886432002002213788988741977998474489999986215889876899999886387--5
Q ss_pred EEEECCCCCC----CEEEEEECC----------CCCCCCCCEEECCC
Q ss_conf 4330367887----348984055----------32122221033057
Q gi|254780654|r 117 VLVSAPCKGV----KKTIVYGVN----------HQSLNKEDKVVSNA 149 (333)
Q Consensus 117 VIiSaP~kd~----~~tiV~GvN----------~~~~~~~~~IiS~a 149 (333)
+++-.+|.++ ++|||-|=+ ++. |..-+++.|
T Consensus 143 ~~~~GTSAGAaVMs~~MIV~G~sPaaLvLPvGa~e~--P~~~~~~Ma 187 (297)
T TIGR02069 143 IILGGTSAGAAVMSDTMIVEGDSPAALVLPVGAEES--PRKETVDMA 187 (297)
T ss_pred EEEEECCCCHHHCCCCEEEECCCCCEEEEECCCCCC--CCCCCHHHC
T ss_conf 899964730222889616426898347762255778--663503004
No 287
>TIGR01029 rpsG_bact ribosomal protein S7; InterPro: IPR005717 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=22.72 E-value=23 Score=16.39 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCC---CCCEEEEEECCCCC
Q ss_conf 456777762017---87104343123353
Q gi|254780654|r 212 AKAVELVLPNLK---GKLDGSSIRVPTPN 237 (333)
Q Consensus 212 a~ai~~vlP~l~---gkl~g~a~RVPt~~ 237 (333)
-+||..|-|.++ =++.|..++|||..
T Consensus 62 ~~AlenVkP~~EVk~RRVGGaTYQVP~EV 90 (159)
T TIGR01029 62 EKALENVKPLLEVKSRRVGGATYQVPVEV 90 (159)
T ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 99986278724676456548665022255
No 288
>pfam00174 Oxidored_molyb Oxidoreductase molybdopterin binding domain. This domain is found in a variety of oxidoreductases. This domain binds to a molybdopterin cofactor. Xanthine dehydrogenases, that also bind molybdopterin, have essentially no similarity.
Probab=22.46 E-value=57 Score=13.76 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=23.4
Q ss_pred EEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 898365300165---654211012333334465632786066433
Q gi|254780654|r 60 VKIIGDTIDVGL---GPIQVTSIRDPQDLPWGDVDVAMECTGFFV 101 (333)
Q Consensus 60 v~~~~~~l~in~---~~i~i~~~~~p~~i~W~~vDiViEcTG~f~ 101 (333)
+..++-.|.|.| ++..++ -.+..++|-.++-..++|.|.+.
T Consensus 9 id~~~w~L~V~G~V~~p~~~t-l~dL~~~p~~~~~~~~~Cv~~ws 52 (156)
T pfam00174 9 VDPDDWRLRVDGLVENPLTLT-LDELKALPQVERVATLHCVGNWS 52 (156)
T ss_pred CCCCCCEEEEEEECCCCEEEE-HHHHHCCCCEEEEEEEEECCCCC
T ss_conf 178682999988729970877-99986789889999998447886
No 289
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=22.39 E-value=50 Score=14.15 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=10.5
Q ss_pred CEEEEECCCE-EEECCCCCCCCEEEEC
Q ss_conf 8574225873-5443488786216832
Q gi|254780654|r 270 NILGYVTLPL-VSVDFNHTSYSSIFAA 295 (333)
Q Consensus 270 ~il~~~~~~l-VS~D~ig~~~s~i~D~ 295 (333)
|++=|..|+= |-+==-|.-+|++|.-
T Consensus 260 G~~IY~~dqqdV~AGGSG~ACSAvV~y 286 (331)
T TIGR02845 260 GVMIYRPDQQDVFAGGSGCACSAVVTY 286 (331)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHEEHH
T ss_conf 467533887810577856650332113
No 290
>TIGR00069 hisD histidinol dehydrogenase; InterPro: IPR001692 Histidinol dehydrogenase (1.1.1.23 from EC) (HDH) catalyses the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His . The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules . By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme . A Cys residue has been implicated in the catalytic mechanism of the second oxidative step . In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast .; GO: 0004399 histidinol dehydrogenase activity, 0000105 histidine biosynthetic process.
Probab=22.36 E-value=45 Score=14.46 Aligned_cols=86 Identities=13% Similarity=0.256 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHC--CCCCCCCCEEEEECC---------------CCCCCCCCCCCCCCCCCCCCCCC-C--CCE----
Q ss_conf 88999999887514--412556740898365---------------30016565421101233333446-5--632----
Q gi|254780654|r 37 LNSIETMAHLLRYD--SVHGRFPGEVKIIGD---------------TIDVGLGPIQVTSIRDPQDLPWG-D--VDV---- 92 (333)
Q Consensus 37 ~~~~~~~~~Ll~yD--S~hG~~~~~v~~~~~---------------~l~in~~~i~i~~~~~p~~i~W~-~--vDi---- 92 (333)
-+|-.-+.|-=||| -+-= + ..++..+ .|..--..|.-|+...-....|. + -++
T Consensus 37 ~GD~Al~~yt~kFDfaGv~~--~-~l~Vs~eE~eeA~~~ld~~l~~A~~~A~~NI~~FH~~Q~~~~~~~~e~~~Gv~~g~ 113 (435)
T TIGR00069 37 EGDEALREYTRKFDFAGVEL--E-NLRVSAEEIEEAYKSLDDELKEALEQAKENIEKFHAAQMPSPKWLVEIQPGVMCGQ 113 (435)
T ss_pred HHHHHHHHHHHHHCCCCEEE--C-CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
T ss_conf 42399999988518654156--3-65368789999873145889999999999899986742787432102278737633
Q ss_pred ---EEEECCCCCCCCCCCHH----------HHCCCCEEEEECCC-CC
Q ss_conf ---78606643332122001----------10584234330367-88
Q gi|254780654|r 93 ---AMECTGFFVTQEKASLH----------LSNGSQRVLVSAPC-KG 125 (333)
Q Consensus 93 ---ViEcTG~f~~~~~~~~H----------L~~GakkVIiSaP~-kd 125 (333)
=|||-|.|-=.-++.-. .-+|+||++++.|| ||
T Consensus 114 ~~rPi~~VG~YiPGG~A~yPStvLM~~iPA~vAGvekIV~ctPP~KD 160 (435)
T TIGR00069 114 VVRPIEKVGLYIPGGRAAYPSTVLMLAIPAKVAGVEKIVLCTPPDKD 160 (435)
T ss_pred EECCCCCCCEECCCCCCCCCHHHHHHCCCCEECCEEEEEEECCCCCC
T ss_conf 51450423204588865640003542034113136789986586998
No 291
>KOG2305 consensus
Probab=22.35 E-value=35 Score=15.17 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=64.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC------CHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC---
Q ss_conf 189885668688999999996888872899960688------99999988751441255674089836530016565---
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN------SIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGP--- 73 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~------~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~--- 73 (333)
-||||.|-|-+|+....... + .+++|.- -|+. -++++-.=|+.=--||-+.+.+..++....|.+..
T Consensus 4 ~ki~ivgSgl~g~~WAmlFA-s--~GyqVql-YDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305 4 GKIAIVGSGLVGSSWAMLFA-S--SGYQVQL-YDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred CCEEEEECCCCCCHHHHHHH-C--CCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH
T ss_conf 50467623231225999986-0--6726997-623599999999999999999997210126764888888870886499
Q ss_pred -----CCCCCCCCCCCCCCC-----CCCEEEEECCCCCCCC--CCCHHHHCC---CCEEEEECCC
Q ss_conf -----421101233333446-----5632786066433321--220011058---4234330367
Q gi|254780654|r 74 -----IQVTSIRDPQDLPWG-----DVDVAMECTGFFVTQE--KASLHLSNG---SQRVLVSAPC 123 (333)
Q Consensus 74 -----i~i~~~~~p~~i~W~-----~vDiViEcTG~f~~~~--~~~~HL~~G---akkVIiSaP~ 123 (333)
-...+|--|++++.+ ..|-++|-+-+..+.. -....+.+| .++++++.|.
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPv 144 (313)
T KOG2305 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPV 144 (313)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHEEEECCC
T ss_conf 99863346886165766789999999987548865872264425767775666524432574579
No 292
>PRK10834 hypothetical protein; Provisional
Probab=21.95 E-value=58 Score=13.73 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCC----------CCCCHHHHC-CCCEEEEECCC-C---CCCE-----EEEEECCCCCC
Q ss_conf 233333446563278606643332----------122001105-84234330367-8---8734-----89840553212
Q gi|254780654|r 80 RDPQDLPWGDVDVAMECTGFFVTQ----------EKASLHLSN-GSQRVLVSAPC-K---GVKK-----TIVYGVNHQSL 139 (333)
Q Consensus 80 ~~p~~i~W~~vDiViEcTG~f~~~----------~~~~~HL~~-GakkVIiSaP~-k---d~~~-----tiV~GvN~~~~ 139 (333)
.+++++|-.++.+|+-++..+.+. +.+....++ -++++|+|+-- . |+.. .+-.||-++.+
T Consensus 37 ~~i~~vP~~~valVLGtak~~~~G~pn~~~~~RldaA~~LY~~GKv~~iLvSGDn~~~~YnEp~~Mk~~Li~~GVP~e~I 116 (239)
T PRK10834 37 DELQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPADI 116 (239)
T ss_pred CCHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHE
T ss_conf 68747798756999457646789981989999999999999869974898668999888982899999999859989995
Q ss_pred CCCC-EEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf 2221-033057641023466888754121023221001
Q gi|254780654|r 140 NKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176 (333)
Q Consensus 140 ~~~~-~IiS~aSCTtn~laPvlk~l~~~~gI~~g~~TT 176 (333)
--++ -.=..-||- .. .+-||+++..+-|
T Consensus 117 ~~D~AGfrT~DS~v--------RA-k~VF~~~~~iIVT 145 (239)
T PRK10834 117 VLDYAGFRTLDSIV--------RT-RKVFDTNDFIIIT 145 (239)
T ss_pred ECCCCCCCHHHHHH--------HH-HHHHCCCCEEEEE
T ss_conf 05667654899999--------99-9980998289994
No 293
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=21.92 E-value=46 Score=14.39 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCE---EEECCCCEEECC
Q ss_conf 899998741000048574225873544348878621---683268464289
Q gi|254780654|r 256 INATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSS---IFAADQTKVVSQ 303 (333)
Q Consensus 256 in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~---i~D~~~t~v~~~ 303 (333)
|...++++-. .++++-..|=.-.|+||.|+|.|+ |.|+.|..-..+
T Consensus 407 IiQ~mkka~~--~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~D 455 (782)
T COG0466 407 IIQGMKKAGV--KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSD 455 (782)
T ss_pred HHHHHHHHCC--CCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHH
T ss_conf 9999998677--687478640333167777886888886269765676122
No 294
>PRK04333 50S ribosomal protein L14e; Validated
Probab=21.05 E-value=44 Score=14.51 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=22.7
Q ss_pred ECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 12335310112343320122067889999874
Q gi|254780654|r 232 RVPTPNVSMVDLKCVTSRDVNIDEINATMKYF 263 (333)
Q Consensus 232 RVPt~~vS~vDlt~~l~k~~t~e~in~~~~~a 263 (333)
++|.-...+.|+.+.+.+.++.+++.++++++
T Consensus 47 ~~n~k~l~lT~~kv~i~~~a~~~~V~kA~e~a 78 (83)
T PRK04333 47 RCNIKHLEPTDKKVDIEKGASDEEVKAALEAA 78 (83)
T ss_pred EEECCCEEECCEEEECCCCCCHHHHHHHHHHC
T ss_conf 76022046246599866889837999999885
No 295
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.05 E-value=61 Score=13.57 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCE-EEEEECCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 961-898856686889999999968888728999
Q gi|254780654|r 1 MVC-KVAINGFGRIGRCILRAAVESRRDDVRIVA 33 (333)
Q Consensus 1 M~i-kIgINGfGRIGR~v~R~~~~~~~~~i~iva 33 (333)
|.| ||++-|-|.+|+.+.-.+... +++|+.
T Consensus 1 M~i~~VaViGaG~MG~gIA~~~a~~---G~~V~l 31 (288)
T PRK08293 1 MTIKKVTVAGAGVLGSQIAFQTAFK---GFDVTI 31 (288)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCCEEE
T ss_conf 9957899989788999999999957---992899
No 296
>COG4253 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.01 E-value=61 Score=13.57 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=40.7
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCC-CCEEEEECCCCCCCE
Q ss_conf 898365300165654211012333334465632786066433321220011058-423433036788734
Q gi|254780654|r 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNG-SQRVLVSAPCKGVKK 128 (333)
Q Consensus 60 v~~~~~~l~in~~~i~i~~~~~p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~G-akkVIiSaP~kd~~~ 128 (333)
+...++.+.|+.++....+. .=+-|.|.+-.|.++..|.|..|..-..|...+ ...++=..|....++
T Consensus 154 ~~s~~~~V~i~Ak~~i~l~a-gGayitl~~g~Ie~g~~G~~~~KaA~h~~~Gp~~~~~~~p~~~~~~~~~ 222 (278)
T COG4253 154 LTSTQDEIDITAKKRITLNA-GGAYITLDGGNIEVGTPGEFTVKAAGHSFVGPASRPADLPALPASAVKP 222 (278)
T ss_pred EEECCCEEEEEEEEEEEEEC-CCCEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97405479998533799956-8227997298079637753588337765348887875376677556686
No 297
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=20.49 E-value=63 Score=13.50 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=52.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH--HHHHCCCCCCCCCEEEEECCCCCCCCCCCCC--CC
Q ss_conf 1898856686889999999968888728999606889999998--8751441255674089836530016565421--10
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAH--LLRYDSVHGRFPGEVKIIGDTIDVGLGPIQV--TS 78 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~--Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i--~~ 78 (333)
-||.|-|.|-+|-.+...+...--..+.++- .|.-+..++.. |+..+. =|+.+.++ ....|.--+-.+++ ..
T Consensus 22 s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD-~d~v~~snL~RQ~l~~~~d-iG~~Ka~~--a~~~l~~lNp~v~i~~~~ 97 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILD-DRTVTEEDLGAQFLIPAED-LGQNRAEA--SLERLRALNPRVKVSVDT 97 (197)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCHHHCCCCEECCCCC-CCCCHHHH--HHHHHHHHCCCCEEEEEE
T ss_conf 9599988788999999999983798699998-9918777739786032334-78885999--999999738997289870
Q ss_pred CC-CCCCCCC-CCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 12-3333344-656327860664333212200110
Q gi|254780654|r 79 IR-DPQDLPW-GDVDVAMECTGFFVTQEKASLHLS 111 (333)
Q Consensus 79 ~~-~p~~i~W-~~vDiViEcTG~f~~~~~~~~HL~ 111 (333)
+. +....+| ++.|+|++||--|.++-.......
T Consensus 98 ~~~~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~ 132 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELSRAELVKINELCR 132 (197)
T ss_pred CCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 45857689998289999999999999999999999
No 298
>KOG2558 consensus
Probab=20.39 E-value=45 Score=14.44 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=14.9
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 79999983871467999999999975
Q gi|254780654|r 305 LLRVLVWYDNEWGFSNRMLDTASAMA 330 (333)
Q Consensus 305 ~~Ki~~WYDNEwgYs~rlidl~~~ia 330 (333)
.--+++.|.| ||-.++.+.+...
T Consensus 361 tteVVavy~n---~s~~LlqLfeqF~ 383 (532)
T KOG2558 361 TTEVVAVYPN---YSVNLLQLFEQFN 383 (532)
T ss_pred EEEEEEECCC---CHHHHHHHHHHHH
T ss_conf 3689998056---4689999999987
No 299
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=20.21 E-value=63 Score=13.46 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=28.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCCC-CHHHH
Q ss_conf 1898856686889999999968888-72899960688-99999
Q gi|254780654|r 3 CKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLN-SIETM 43 (333)
Q Consensus 3 ikIgINGfGRIGR~v~R~~~~~~~~-~i~ivaINd~~-~~~~~ 43 (333)
|+-.++|||.+=+.++....++... +..| -|||.+ .+...
T Consensus 48 I~Tsv~Gf~~~Wqav~~~f~~r~~~~~~~i-~InD~GATP~VV 89 (105)
T PRK02103 48 IRTAAVGFGAVWQAVVADFVERRSPGGLRI-SINDGGARPDVV 89 (105)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCCHHH
T ss_conf 994456918999999999996088866379-994699983653
No 300
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=20.12 E-value=64 Score=13.45 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCEEEECCCC-EEECCCEEEEEEEECCCHHHHH
Q ss_conf 234332012206788999987410000485742258735443488786216832684-6428977999998387146799
Q gi|254780654|r 242 DLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQT-KVVSQNLLRVLVWYDNEWGFSN 320 (333)
Q Consensus 242 Dlt~~l~k~~t~e~in~~~~~as~~~~~~il~~~~~~lVS~D~ig~~~s~i~D~~~t-~v~~~~~~Ki~~WYDNEwgYs~ 320 (333)
.+-+.|.+.+|+++|.+.|+=..- ++-++++-+. -+.|+..+++|-=-|..=+ ..+. -.|+--|--|.
T Consensus 422 ~vgi~LDETtT~~dv~~L~~Vf~g---~dN~~l~~~~-L~~dv~~dsrSfp~~~~R~deiL~---~~VFn~yHSET---- 490 (965)
T TIGR00461 422 EVGIALDETTTKEDVLDLLKVFAG---EDNLGLSSEE-LSEDVSNDSRSFPAELLRDDEILR---DEVFNRYHSET---- 490 (965)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCHHH-HHHHHHHCCCCCCHHHCCCHHHHC---CCCCCCCCCHH----
T ss_conf 411221423438999999998504---5889988777-778762001346754335114430---40002557468----
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999997504
Q gi|254780654|r 321 RMLDTASAMANL 332 (333)
Q Consensus 321 rlidl~~~ia~~ 332 (333)
+|++||.+|
T Consensus 491 ---emlRYlH~L 499 (965)
T TIGR00461 491 ---EMLRYLHRL 499 (965)
T ss_pred ---HHHHHHHHH
T ss_conf ---999987642
No 301
>pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Probab=20.09 E-value=61 Score=13.59 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=13.9
Q ss_pred CCCEEEEECCCCCCCCCCCH
Q ss_conf 56327860664333212200
Q gi|254780654|r 89 DVDVAMECTGFFVTQEKASL 108 (333)
Q Consensus 89 ~vDiViEcTG~f~~~~~~~~ 108 (333)
+.|+|+-|.|-..|.|.+.+
T Consensus 34 ePDVVlA~aGd~pT~E~LAA 53 (203)
T pfam09363 34 EPDVVMACAGDVPTLETLAA 53 (203)
T ss_pred CCCEEEECCCCCCCHHHHHH
T ss_conf 99999981787211999999
Done!