HHsearch alignment for GI: 254780654 and conserved domain: pfam02774
>pfam02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerization domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=94.59 E-value=0.047 Score=33.92 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=65.6
Q ss_pred HHHHHHCC-CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHH---HHHHHH---------HCCCC
Q ss_conf 88754121-02322100113453222355665453000112365646453112-456---777762---------01787
Q gi|254780654|r 160 VHVLDKMF-GIEKGYMTTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGA-AKA---VELVLP---------NLKGK 225 (333)
Q Consensus 160 lk~l~~~~-gI~~g~~TTiH~~t~~Q~l~D~~~~d~Rr~Raa~~niIPt~Tga-a~a---i~~vlP---------~l~gk 225 (333)
T Consensus 1 L~PL~~~~~~i~~Iiv~t~qgvSGAG~~~----~~~~~~~~i~~N~~py~~~~~h~h~~Ei~eel~~~~e~~~~l~~~~~ 76 (167)
T pfam02774 1 LKPLRDALGGLERVIVDTYQAVSGAGKKA----KPGVFGAPIADNLIPYIDGEEHNGTPETREELKMVNETKKILGFTPK 76 (167)
T ss_pred CCCHHHHHCCCCEEEEEECCCCCCCCCCC----CCCCCCHHHHCCEEEECCCHHHCCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 92044644899799999211025067887----86786534328889425740304830688887774178367438986
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCCHHHHHHHHHH
Q ss_conf 10434312335310112343320-12206788999987
Q gi|254780654|r 226 LDGSSIRVPTPNVSMVDLKCVTS-RDVNIDEINATMKY 262 (333)
Q Consensus 226 l~g~a~RVPt~~vS~vDlt~~l~-k~~t~e~in~~~~~ 262 (333)
T Consensus 77 v~~T~~rVPv~rGh~~ti~v~~~~~~~~~~~~~~~~~~ 114 (167)
T pfam02774 77 VSATCVRVPVFRGHSETVTVKLKLKPIDVEEVYEAFYA 114 (167)
T ss_pred CCCEEEECCEEEEEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 33258981408468999999954881659999999973