BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate
Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(333 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 333
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV
Sbjct: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS
Sbjct: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY
Sbjct: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM
Sbjct: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV
Sbjct: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333
VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS
Sbjct: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333
>gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 335
Score = 26.9 bits (58), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 75 QVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKT--IVY 132
+ ++D + + D D+ + G V+ + + +NG + S+ + IV
Sbjct: 50 ETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVP 109
Query: 133 GVNHQ--SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTG 182
VN Q SL +++N +C+T LV + L + I++ +TT S +G
Sbjct: 110 EVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161
>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 578
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 28/107 (26%)
Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQ 297
+++++L TSR+ A Y+ GD+K+ VS D SI A Q
Sbjct: 265 ITVLNLSSKTSRE---SASGAVAPYYVWGDIKD---------VSKDGR-----SISVAPQ 307
Query: 298 TKVVSQNLLRVLVWYDNEWG-----------FSNRMLDTASAMANLS 333
++ + Q + V+ W+ + WG +NR+L + S LS
Sbjct: 308 SQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELS 354
>gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 69
Score = 24.6 bits (52), Expect = 2.1, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 171 KGYMTTVHSYTGDQHVLDAGHSDLYRS 197
KG + + S+ QH +D HS+++R+
Sbjct: 34 KGNLQPIISFLDAQHFIDPIHSEVFRA 60
>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 412
Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 77 TSIRDPQDLPWGDVDVAMECTG 98
T++R+P + P+ D D+ CTG
Sbjct: 186 TNVREPGNRPYTDFDIG-NCTG 206
>gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
[Candidatus Liberibacter asiaticus str. psy62]
Length = 171
Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 72 GPIQVTSIRDPQDLPWGDVDVAMECTG 98
G +Q +++D Q + +GD + +E TG
Sbjct: 142 GKVQDINVKDGQSVEYGDALLVLEKTG 168
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 115 QRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNA 149
+RV+++ P K T++ +NH ++ +++ N
Sbjct: 44 ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,006
Number of Sequences: 1233
Number of extensions: 8191
Number of successful extensions: 30
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 10
length of query: 333
length of database: 328,796
effective HSP length: 74
effective length of query: 259
effective length of database: 237,554
effective search space: 61526486
effective search space used: 61526486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)