HHsearch alignment for GI: 254780655 and conserved domain: COG3962

Probab=97.96  E-value=1.8e-05  Score=58.64  Aligned_cols=89  Identities=24%  Similarity=0.305  Sum_probs=40.5

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHCCCCCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             14799-9999999999853426887678459998---4362114344557887652202233069996276322322355
Q gi|254780655|r  133 GQGIA-NAVGMAIAERKLREEFGDVLIDHYTYVL---VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISL  208 (673)
Q Consensus       133 G~gis-~a~G~A~a~k~~~~~~~~~~~d~~v~~i---iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~  208 (673)
T Consensus        65 EQgMAhaAiayaKq~~--R---------rr~~A~tsSiGPGA~N--mv-TaAalA~~NrlPvLllPgD--vf------A~  122 (617)
T COG3962          65 EQGMAHAAIAYAKQHR--R---------RRIYAVTSSIGPGAAN--MV-TAAALAHVNRLPVLLLPGD--VF------AT  122 (617)
T ss_pred             HHHHHHHHHHHHHHHH--H---------CEEEEEECCCCCCHHH--HH-HHHHHHHHHCCCEEEECCC--HH------CC
T ss_conf             7677889999999975--4---------2115774366885788--99-9999987604856750441--00------12


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCC------------CCHHHHHHHHHHH
Q ss_conf             6782179988641444444444------------4067888888875
Q gi|254780655|r  209 ADSTDQYARFRASGWNTLSVNG------------HDHHAITSTLRKA  243 (673)
Q Consensus       209 ~~~~~~~~~~~a~Gw~~~~vdG------------~d~~~i~~a~~~a  243 (673)
T Consensus       123 R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA  169 (617)
T COG3962         123 RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRA  169 (617)
T ss_pred             CCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf             69985888653035672220113434777766137999999999999