HHsearch alignment for GI: 254780655 and conserved domain: PRK05444
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=1038.35 Aligned_cols=551 Identities=25% Similarity=0.379 Sum_probs=480.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
T Consensus 10 i~~p~dlk~l~~----~~l~~la~~iR~~~i~~v~~-~~GH~g~~lg~~e~~~aL~~---~f~~~------rDr~v~s~G 75 (576)
T PRK05444 10 INSPADLRKLSL----EELPQLADEIREFLIDSVSK-TGGHLGSNLGVVELTVALHY---VFDTP------KDRIIWDVG 75 (576)
T ss_pred CCCHHHHHCCCH----HHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHH---HCCCC------CCCEEEECC
T ss_conf 699899860999----99999999999999999976-58988857479999999985---26999------884898275
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
T Consensus 76 H~~---Y~hk~LtG~----~~~~~~~r~~~~-l~g~~~~~es~~d~~~~G~~g~gls~a~G~A~a~~l~~~-------~~ 140 (576)
T PRK05444 76 HQA---YPHKILTGR----RDRFDTLRQKGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGE-------DR 140 (576)
T ss_pred HHH---HHHHHHCCC----HHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------CC
T ss_conf 075---566886275----877631451499-889999987889877878762178899999999984699-------95
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHH
Q ss_conf 599984362114344557887652202233069996276322322355678217998864144444-4444406788888
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITST 239 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a 239 (673)
T Consensus 141 ~v~~~~GDG~l~eGis~EA~s~Ag~~~-~~liii~~DN~isI~~~vg~~~~~---~~Fea~Gw~~i~~iDGhd~~~i~~a 216 (576)
T PRK05444 141 KVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNY---TLFEELGFKYIGPIDGHDLDALVET 216 (576)
T ss_pred EEEEEECCHHHCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCC---HHHHHCCCEEECCCCCCCHHHHHHH
T ss_conf 499998140103314899997555338-876999977982007886543310---1789809948686589899999999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887511022102220133455570004-7711033437223321256634877785438978999999754333566887
Q gi|254780655|r 240 LRKAQLSDKPTMIACETVIGFGSPNRA-GTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRAD 318 (673)
Q Consensus 240 ~~~ak~~~kP~~I~~~T~kG~G~~~~e-~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~ 318 (673)
T Consensus 217 l~~ak~~~~P~lI~~kT~~G~G~~~~e~~~~~~Hg~~------------------~f~~~~~------------------ 260 (576)
T PRK05444 217 LKNAKDLKGPVLLHVVTKKGKGYAPAEADPIKYHGVG------------------KFDPETG------------------ 260 (576)
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCHHCCHHHCCCCC------------------CCCHHHC------------------
T ss_conf 9988866999899999705667781220512225668------------------8794434------------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64246763111110023001110776302355542000001355431013467888998865543322034555674000
Q gi|254780655|r 319 WQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTK 398 (673)
Q Consensus 319 w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~ 398 (673)
T Consensus 261 -----~~~----~--------~~~~--------------------~~~~~~f~~~L~~l~~~~~~iv~itaa~~~~t~l~ 303 (576)
T PRK05444 261 -----KQP----K--------KPGK--------------------PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLD 303 (576)
T ss_pred -----CCC----C--------CCCC--------------------CCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCC
T ss_conf -----346----7--------7665--------------------06999999999999874302003054214786644
Q ss_pred CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHHHHHCCCEEECCCCCCCCC
Q ss_conf 2666344543200100325762002356787998728876220010035553001245-411110000130245433333
Q gi|254780655|r 399 TSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LASLMGIRVIHVLTHDSIGLG 477 (673)
Q Consensus 399 ~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~al~~~~v~~v~th~gi~~G 477 (673)
T Consensus 304 ------~f~~~~P~R~~~~GIaEqhav~~aaGlA~-~G~~Pf~~~~stFl~Ra~dQi~~d~al~~l~V~~v~d~~Gl-vG 375 (576)
T PRK05444 304 ------EFSKRFPDRYFDVGIAEQHAVTFAAGLAT-EGLKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VG 375 (576)
T ss_pred ------HHHHHCCCCEEECCCHHHHHHHHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CC
T ss_conf ------36775876341157457779999745865-69986688821287776999987654127976899607866-78
Q ss_pred CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 33310100022210111012211211201245777765202567834999524444334566553221234737998569
Q gi|254780655|r 478 EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP 557 (673)
Q Consensus 478 ~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~ 557 (673)
T Consensus 376 eDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~~Al~~~~gP~~irl~R~~~~~~~~--~~~~~~~~Gk~~vl~-~ 452 (576)
T PRK05444 376 ADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPTAIRYPRGSGVGVEL--PELEPLPIGKGEVLR-E 452 (576)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCCEEEEEE-C
T ss_conf 9985100379999852699818996299999999999998578998899942788888787--765434465089996-2
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHC
Q ss_conf 97299995268899999999999973994399857465810008688999643679779997286-----0278999845
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAG-----LRQGWDAFIG 632 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g-----~~~g~~~~~~ 632 (673)
T Consensus 453 G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~~~ikPlD~---e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~ 529 (576)
T PRK05444 453 GSDVAILAFGTMLAEALEAAERLAAEGISATVVDARFVKPLDE---ELLLELAAKHELLVTVEENAIMGGFGSAVLEFLA 529 (576)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 8978999538799999999999985699879995587788799---9999999548979999389757658999999999
Q ss_pred CCC-------CEEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 798-------18983-5776768888999980999899999999984
Q gi|254780655|r 633 SDG-------SFIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 633 ~~~-------~~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L 671 (673)
T Consensus 530 ~~g~~~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e~I~~kI~~~L 576 (576)
T PRK05444 530 EHGLLKPVKVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILAWL 576 (576)
T ss_pred HCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 75997797469998488366889999999996939999999999659