HHsearch alignment for GI: 254780655 and conserved domain: PRK12315
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=1010.79 Aligned_cols=553 Identities=20% Similarity=0.290 Sum_probs=473.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
T Consensus 6 i~~p~dlk~l~~----~~L~~la~~iR~~~i~~v~-~~~GH~g~~lg~~el~~alh~---~f~--~p----~Dr~v~s~G 71 (581)
T PRK12315 6 INSPKDIKKLSL----EELEQLATEIRTALLEKDS-AHGGHVGPNLGVVELTIALHY---VFN--SP----KDKIVWDVS 71 (581)
T ss_pred CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHH---HCC--CC----CCCEEEECC
T ss_conf 899899862999----9999999999999999974-438867857689999999998---528--98----887477376
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
T Consensus 72 H~s---Y~~~~Ltgr~~-~~~~~~~~~---~-l~g~~~~~e~~~d~~~tG~~g~gls~avGmA~A~~~~~~-------~~ 136 (581)
T PRK12315 72 HQS---YPHKMLTGRKE-AFLDPDHYD---D-VTGYTNPEESEHDFFTVGHTSTSIALATGMAKARDLKGE-------KE 136 (581)
T ss_pred CHH---HHHHHHHCCCC-CCCCCHHCC---C-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-------CC
T ss_conf 178---99999956601-168612128---8-889898988889877877637899999999999997299-------98
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC----------CCHHHHHHHCCCCCCCC-C
Q ss_conf 599984362114344557887652202233069996276322322355678----------21799886414444444-4
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS----------TDQYARFRASGWNTLSV-N 229 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~----------~~~~~~~~a~Gw~~~~v-d 229 (673)
T Consensus 137 ~v~~v~GDG~l~eG~~~EA~~~Ag~~~-~nlivi~ddN~isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~D 215 (581)
T PRK12315 137 NIIAVIGDGSLSGGLAFEGLNNAAELK-SNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVED 215 (581)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCC
T ss_conf 489998551344016799987634589-8559999768802358730777777887750375501069984986882579
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4406788888887511022102220133455570-004771103343722332125663487778543897899999975
Q gi|254780655|r 230 GHDHHAITSTLRKAQLSDKPTMIACETVIGFGSP-NRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLA 308 (673)
Q Consensus 230 G~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~-~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~ 308 (673)
T Consensus 216 Ghd~~~i~~al~~ak~~~~P~~I~v~T~kG~G~~~a~~~~~~~H~~------------------~pf~~~~g-------- 269 (581)
T PRK12315 216 GNDLESLIELFKEVKDIDHPIVLHIHTLKGKGYKPAEENKEAFHWH------------------MPFDLETG-------- 269 (581)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCC------------------CCCCCCCC--------
T ss_conf 9999999999999863699979999967863666110357763665------------------67661346--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 43335668876424676311111002300111077630235554200000135543101346788899886554332203
Q gi|254780655|r 309 GLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGS 388 (673)
Q Consensus 309 ~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~s 388 (673)
T Consensus 270 ------------------~~~--------~----~~-----------------~~~~~~~~~~~~l~~~~~~~~~ivai~ 302 (581)
T PRK12315 270 ------------------QSK--------V----PA-----------------SGESYSSVVLDYLLKKIEEGKPVVAIN 302 (581)
T ss_pred ------------------CCC--------C----CC-----------------CCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf ------------------545--------6----78-----------------756989999999999987464415421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHHHHHCCCEE
Q ss_conf 45556740002666344543200100325762002356787998728876220010035553001245-41111000013
Q gi|254780655|r 389 ADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LASLMGIRVIH 467 (673)
Q Consensus 389 ADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~al~~~~v~~ 467 (673)
T Consensus 303 a~~~~~~gl~------~f~~~~P~R~i~~GIaEq~mv~~a~GlA~-~G~~P~~~~fstFl~ra~dqi~~dial~~lpv~~ 375 (581)
T PRK12315 303 AAIPGVFGLK------EFRKKYPDRYVDVGIAEQHSVAFASGMAA-AGARPVIFVNSTFLQRAYDQLSHDLAINNNPAVM 375 (581)
T ss_pred CCCCCCCCCC------HHHHHCCCCEEECCHHHHHHHHHHHHHHH-CCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 3578765753------13241850167516088899999878975-7996468884423314688998999983699899
Q ss_pred ECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 02454333333331010002221011101221121120124577776520256783499952444433456655322123
Q gi|254780655|r 468 VLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCA 547 (673)
Q Consensus 468 v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~ 547 (673)
T Consensus 376 ~~~~~~i--gedGpTHq~iedia~lR~iPN~~V~~PaD~~E~~~~~~~Al~~~~gP~~iR~pr~~~~~~~---~~~~~~~ 450 (581)
T PRK12315 376 IVFGGSI--SGNSVTHQGSFDIAMISNIPNLVYLAPTSKEELIAMLEWALTQHEHPVAIRVPEHVLESGP---TVDTDYS 450 (581)
T ss_pred EEECCCC--CCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---CCCCCCC
T ss_conf 9961777--8999875147788997256883899319999999999999971699589993787677787---6555555
Q ss_pred CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCC----
Q ss_conf 473799856997299995268899999999999973-994399857465810008688999643679779997286----
Q gi|254780655|r 548 LGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAG---- 622 (673)
Q Consensus 548 ~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g---- 622 (673)
T Consensus 451 ~g~~~v~~-~G~dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~~vkPlD~~---~l~~~~~~~~~ivtvEeh~~~G 526 (581)
T PRK12315 451 TLNYEVAK-AGEKVAILALGDFYELGEKVAKKLKEKLGIDATLINPKFITGLDEE---LLENLKEDHELVVTLEDGILDG 526 (581)
T ss_pred CCCEEEEE-CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH---HHHHHHHCCCEEEEEECCCCCC
T ss_conf 44189975-5898899986077899999999987512998799957724887999---9999982498799992797664
Q ss_pred -CHHHHHHHHCCCCC---EEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf -02789998457981---8983-57767688889999809998999999999848
Q gi|254780655|r 623 -LRQGWDAFIGSDGS---FIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 623 -~~~g~~~~~~~~~~---~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
T Consensus 527 GlGs~v~~~l~~~~~~v~~~Gi~d~F~~sg~~~el~~~~Glt~e~I~~~I~~~Lk 581 (581)
T PRK12315 527 GFGEKIARYYGNSDMKVLNYGAKKEFADRVPVEELYKRYHLTPEQIVEDILSVLK 581 (581)
T ss_pred CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 5899999999767990899835886768899999999949699999999999859