HHsearch alignment for GI: 254780655 and conserved domain: TIGR03336

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.20  E-value=0.0004  Score=48.92  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCC-C-CCC-----------CCHHHHCCC
Q ss_conf             56787998728876220010--0355530012454111100001302-454333-3-333-----------310100022
Q gi|254780655|r  425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIG-L-GED-----------GPTHQPVEH  488 (673)
Q Consensus       425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~-~-G~D-----------GpTHq~ied  488 (673)
T Consensus       409 ~~~~~G~~~~~~~~~v~a~iGDgTffHSG~~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~g~~~~~i~i~~  488 (595)
T TIGR03336       409 IGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEE  488 (595)
T ss_pred             HHHHEEECCCCCCCCEEEEECCCCCHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf             56531303257987379991366101056599999997699869999868850434899999866544688643223899


Q ss_pred             CCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             210111012211211201245777765202567834999524
Q gi|254780655|r  489 LAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       489 ia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
T Consensus       489 ~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~-~GvsViI~~q  529 (595)
T TIGR03336       489 LCRASGVEFVEVVDPLNVKETIEVFKAALAA-EGVSVIIAKQ  529 (595)
T ss_pred             HHHHCCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             8876699843687877989999999998618-9978999729