HHsearch alignment for GI: 254780655 and conserved domain: TIGR03336
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.20 E-value=0.0004 Score=48.92 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCC-C-CCC-----------CCHHHHCCC
Q ss_conf 56787998728876220010--0355530012454111100001302-454333-3-333-----------310100022
Q gi|254780655|r 425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIG-L-GED-----------GPTHQPVEH 488 (673)
Q Consensus 425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~-~-G~D-----------GpTHq~ied 488 (673)
T Consensus 409 ~~~~~G~~~~~~~~~v~a~iGDgTffHSG~~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~g~~~~~i~i~~ 488 (595)
T TIGR03336 409 IGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEE 488 (595)
T ss_pred HHHHEEECCCCCCCCEEEEECCCCCHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf 56531303257987379991366101056599999997699869999868850434899999866544688643223899
Q ss_pred CCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 210111012211211201245777765202567834999524
Q gi|254780655|r 489 LAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 489 ia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
T Consensus 489 ~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~-~GvsViI~~q 529 (595)
T TIGR03336 489 LCRASGVEFVEVVDPLNVKETIEVFKAALAA-EGVSVIIAKQ 529 (595)
T ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 8876699843687877989999999998618-9978999729