HHsearch alignment for GI: 254780655 and conserved domain: cd00568

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.47  E-value=3.2e-13  Score=114.74  Aligned_cols=145  Identities=24%  Similarity=0.317  Sum_probs=106.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             87799856520189999999707688998898640003887988988889987306888631479999999999998534
Q gi|254780655|r   72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLRE  151 (673)
Q Consensus        72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~  151 (673)
T Consensus        13 ~~ivv~d~G~~~~~~~~~~~~----------------------~~~---~~~~~~~~~g~mG~~~p~AiGa~~a~p----   63 (168)
T cd00568          13 DAIVVNDAGNSAYWAYRYLPL----------------------RRG---RRFLTSTGFGAMGYGLPAAIGAALAAP----   63 (168)
T ss_pred             CCEEEECCHHHHHHHHHHCCC----------------------CCC---CEEECCCCCCHHHHHHHHHHHHHHHCC----
T ss_conf             969998752769999997562----------------------899---959828987537779999999998789----


Q ss_pred             HCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----------CCCCCCCHHHHHHH
Q ss_conf             2688767845999843621143445578876522022330699962763223223-----------55678217998864
Q gi|254780655|r  152 EFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI-----------SLADSTDQYARFRA  220 (673)
Q Consensus       152 ~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~-----------~~~~~~~~~~~~~a  220 (673)
T Consensus        64 -------~~~vv~i~GDG~f~~--~~~el~ta~~~~l~i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~  134 (168)
T cd00568          64 -------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEA  134 (168)
T ss_pred             -------CCEEEEEECCCCCEE--CCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             -------983999977974211--31766456531884269999776136779999850289876565888877899997


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             144444444440678888888751102210222013
Q gi|254780655|r  221 SGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       221 ~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
T Consensus       135 ~G~~~~~v~--~~~el~~al~~a~~~~~p~li~V~t  168 (168)
T cd00568         135 YGAKGVRVE--DPEDLEAALAEALAAGGPALIEVKT  168 (168)
T ss_pred             CCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             498699989--9999999999998389978999989