HHsearch alignment for GI: 254780655 and conserved domain: cd00568
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.47 E-value=3.2e-13 Score=114.74 Aligned_cols=145 Identities=24% Similarity=0.317 Sum_probs=106.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 87799856520189999999707688998898640003887988988889987306888631479999999999998534
Q gi|254780655|r 72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLRE 151 (673)
Q Consensus 72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~ 151 (673)
T Consensus 13 ~~ivv~d~G~~~~~~~~~~~~----------------------~~~---~~~~~~~~~g~mG~~~p~AiGa~~a~p---- 63 (168)
T cd00568 13 DAIVVNDAGNSAYWAYRYLPL----------------------RRG---RRFLTSTGFGAMGYGLPAAIGAALAAP---- 63 (168)
T ss_pred CCEEEECCHHHHHHHHHHCCC----------------------CCC---CEEECCCCCCHHHHHHHHHHHHHHHCC----
T ss_conf 969998752769999997562----------------------899---959828987537779999999998789----
Q ss_pred HCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----------CCCCCCCHHHHHHH
Q ss_conf 2688767845999843621143445578876522022330699962763223223-----------55678217998864
Q gi|254780655|r 152 EFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI-----------SLADSTDQYARFRA 220 (673)
Q Consensus 152 ~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~-----------~~~~~~~~~~~~~a 220 (673)
T Consensus 64 -------~~~vv~i~GDG~f~~--~~~el~ta~~~~l~i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~ 134 (168)
T cd00568 64 -------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEA 134 (168)
T ss_pred -------CCEEEEEECCCCCEE--CCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf -------983999977974211--31766456531884269999776136779999850289876565888877899997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 144444444440678888888751102210222013
Q gi|254780655|r 221 SGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 221 ~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
T Consensus 135 ~G~~~~~v~--~~~el~~al~~a~~~~~p~li~V~t 168 (168)
T cd00568 135 YGAKGVRVE--DPEDLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred CCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 498699989--9999999999998389978999989