HHsearch alignment for GI: 254780655 and conserved domain: cd02006
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.87 E-value=1.1e-08 Score=81.91 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf 88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG--- 204 (673)
Q Consensus 128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~--- 204 (673)
T Consensus 55 ~~g~mG~glPaAiGaklA~P-----------dr~Vv~i~GDGsf~--m~~~EL~Ta~r~~lpii~vV~NN~~~g~ir~~q 121 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP-----------DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQ 121 (202)
T ss_pred CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHH
T ss_conf 98703318999999998769-----------98599997684055--129999999996998399999795568999999
Q ss_pred -------CCC-----------CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCC
Q ss_conf -------235-----------56782179988641444444444406788888887511----02210222013
Q gi|254780655|r 205 -------PIS-----------LADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQL----SDKPTMIACET 256 (673)
Q Consensus 205 -------~~~-----------~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T 256 (673)
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~kiAea~G~~g~rV~--~~~eL~~Al~~A~~~~~~~~~P~lIevii 193 (202)
T cd02006 122 RAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 9853474423254666885446789899999997899899979--99999999999998751479978999997