HHsearch alignment for GI: 254780655 and conserved domain: cd02009

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.83  E-value=1.4e-08  Score=81.22  Aligned_cols=114  Identities=25%  Similarity=0.290  Sum_probs=83.9

Q ss_pred             CCCCCCHH--HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf             68886314--7999999999999853426887678459998436211434455788765220223306999627632232
Q gi|254780655|r  127 ATTGPLGQ--GIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG  204 (673)
Q Consensus       127 ~~tG~lG~--gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~  204 (673)
T Consensus        46 ~NRG~sGIdg~lstAiGaa~a~------------~~pvv~i~GDgsf~--~d~~eL~t~~~~~~pv~ivV~NN~GggIf~  111 (175)
T cd02009          46 ANRGASGIDGTLSTALGIALAT------------DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFS  111 (175)
T ss_pred             ECCCCCCCCCHHHHHHHHHHCC------------CCCEEEEEECHHHH--CCHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf             4688535220899999999658------------99889997026866--167899999866998299999489833999


Q ss_pred             ---------CCCCCCC----CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             ---------2355678----217998864144444444440678888888751102210222013
Q gi|254780655|r  205 ---------PISLADS----TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       205 ---------~~~~~~~----~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
T Consensus       112 ~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~~~gp~lIEV~t  174 (175)
T cd02009         112 LLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALAQDGPHVIEVKT  174 (175)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             98775036864312157776689999998699779849--9999999999998389989999968