HHsearch alignment for GI: 254780655 and conserved domain: cd02018
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.47 E-value=0.0015 Score=44.80 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC
Q ss_conf 8863147999999999999853426887678459998436211434455788765220223306999627632-----23
Q gi|254780655|r 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----ID 203 (673)
Q Consensus 129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~ 203 (673)
T Consensus 57 h~~hgra~a~AtGik~a~~~~~~~~~~~~~~~~Vv~~~GDGd~~-~IG~~~l~ha~~Rn~~i~~I~~dN~~Yg~TggQ~S 135 (237)
T cd02018 57 NSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATY-DIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRS 135 (237)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-HCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 00123318889999999987311110125788689995573576-50078899999828983999988813446788479
Q ss_pred CCCCC------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCCHHHHHCC
Q ss_conf 22355------------678217998864144444-4444406788888887511-02210222013
Q gi|254780655|r 204 GPISL------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKPTMIACET 256 (673)
Q Consensus 204 ~~~~~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP~~I~~~T 256 (673)
T Consensus 136 ptTp~G~~T~ttp~G~~~~~~~~~~ia~~~g~~yVAr~s~~~~~~~~k~~~~A~~~~~G~s~v~vls 202 (237)
T cd02018 136 GATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYT 202 (237)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 8998987130168997678879999998659958999855999999999999986599988999974