HHsearch alignment for GI: 254780655 and conserved domain: cd07034
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.12 E-value=0.017 Score=37.14 Aligned_cols=113 Identities=21% Similarity=0.149 Sum_probs=75.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCC
Q ss_conf 01003257620023567879987288762200100355530012454111100001302-45433333333101000222
Q gi|254780655|r 411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHL 489 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedi 489 (673)
T Consensus 41 ~~~~~~~e-~E~~A~~~~~Gas~-aG~r~~t~ts~~Gl~l~~e~l~~a~~~~~p~Vi~~~~r~g~~~~~~-~~~q--~D~ 115 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASA-AGARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQ--SDL 115 (160)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CCCC--HHH
T ss_conf 83899855-68999999999986-3987374306533988887999998478888999974588865455-5441--789
Q ss_pred CHHHHHC-CCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf 1011101-22112112012457777652025---678349995
Q gi|254780655|r 490 AALRAIP-DLLVLRPADSIETLECWQVALKE---KNRPSVLSL 528 (673)
Q Consensus 490 a~lr~iP-nl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~ 528 (673)
T Consensus 116 ~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~~ 158 (160)
T cd07034 116 MAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999679987999379999999999999999998689989953