HHsearch alignment for GI: 254780655 and conserved domain: cd07034

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.12  E-value=0.017  Score=37.14  Aligned_cols=113  Identities=21%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCC
Q ss_conf             01003257620023567879987288762200100355530012454111100001302-45433333333101000222
Q gi|254780655|r  411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHL  489 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedi  489 (673)
T Consensus        41 ~~~~~~~e-~E~~A~~~~~Gas~-aG~r~~t~ts~~Gl~l~~e~l~~a~~~~~p~Vi~~~~r~g~~~~~~-~~~q--~D~  115 (160)
T cd07034          41 GGVVVQAE-SEHAAAEAAIGASA-AGARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQ--SDL  115 (160)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CCCC--HHH
T ss_conf             83899855-68999999999986-3987374306533988887999998478888999974588865455-5441--789


Q ss_pred             CHHHHHC-CCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf             1011101-22112112012457777652025---678349995
Q gi|254780655|r  490 AALRAIP-DLLVLRPADSIETLECWQVALKE---KNRPSVLSL  528 (673)
Q Consensus       490 a~lr~iP-nl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~  528 (673)
T Consensus       116 ~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~~  158 (160)
T cd07034         116 MAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9999679987999379999999999999999998689989953