HHsearch alignment for GI: 254780655 and conserved domain: cd07035
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.16 E-value=0.079 Score=32.30 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=68.7
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-CH-HHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 0032576200235678799872887622001-00-355530012454111100001302454333333331010002221
Q gi|254780655|r 413 RYLHYGVREHAMAAAMNGIALHKGLAPYSGT-FM-VFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA 490 (673)
Q Consensus 413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f~-~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia 490 (673)
T Consensus 36 ~~i~~-~~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n-~~~~l~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~~ 112 (155)
T cd07035 36 RYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTN-AVTGLANAYLDSIPLLVITGQRPT-AGEGRGAFQEIDQVA 112 (155)
T ss_pred EEEEE-CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHHCCCCEEEEECCCCH-HHHCCCCCCCCCHHH
T ss_conf 79987-877999999999998659975999827768887-889999999838980899468886-772755654536476
Q ss_pred HHHHHCCCCEEEECCHHHHH----HHHHHHHCCCCCCEEEEECC
Q ss_conf 01110122112112012457----77765202567834999524
Q gi|254780655|r 491 ALRAIPDLLVLRPADSIETL----ECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 491 ~lr~iPnl~v~~P~d~~E~~----~~~~~al~~~~gP~~ir~~R 530 (673)
T Consensus 113 ~~~~~~-k~~~~i~~~~~~~~~i~~A~~~a~s~~~gPv~l~iP~ 155 (155)
T cd07035 113 LFRPIT-KWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HCCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 527766-3257889999999999999999745989458998087