HHsearch alignment for GI: 254780655 and conserved domain: cd07035

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.16  E-value=0.079  Score=32.30  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-CH-HHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             0032576200235678799872887622001-00-355530012454111100001302454333333331010002221
Q gi|254780655|r  413 RYLHYGVREHAMAAAMNGIALHKGLAPYSGT-FM-VFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA  490 (673)
Q Consensus       413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f~-~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia  490 (673)
T Consensus        36 ~~i~~-~~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n-~~~~l~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~~  112 (155)
T cd07035          36 RYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTN-AVTGLANAYLDSIPLLVITGQRPT-AGEGRGAFQEIDQVA  112 (155)
T ss_pred             EEEEE-CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHHCCCCEEEEECCCCH-HHHCCCCCCCCCHHH
T ss_conf             79987-877999999999998659975999827768887-889999999838980899468886-772755654536476


Q ss_pred             HHHHHCCCCEEEECCHHHHH----HHHHHHHCCCCCCEEEEECC
Q ss_conf             01110122112112012457----77765202567834999524
Q gi|254780655|r  491 ALRAIPDLLVLRPADSIETL----ECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       491 ~lr~iPnl~v~~P~d~~E~~----~~~~~al~~~~gP~~ir~~R  530 (673)
T Consensus       113 ~~~~~~-k~~~~i~~~~~~~~~i~~A~~~a~s~~~gPv~l~iP~  155 (155)
T cd07035         113 LFRPIT-KWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK  155 (155)
T ss_pred             HCCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             527766-3257889999999999999999745989458998087