HHsearch alignment for GI: 254780655 and conserved domain: cd07036

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.89  E-value=2.1e-23  Score=188.47  Aligned_cols=154  Identities=18%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHH
Q ss_conf             467888998865543322034555674000266634454320-01003257620023567879987288762200-1003
Q gi|254780655|r  369 SSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMV  446 (673)
Q Consensus       369 a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~  446 (673)
T Consensus         2 Ai~~al~~~~~~d~~v~~~g~dv~~~~g~~--~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl-~G~~Pvv~~~~~~   78 (167)
T cd07036           2 AINEALDEEMERDPRVVVLGEDVGDYGGVF--KVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAM-NGLRPIVEIMFAD   78 (167)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEHH
T ss_conf             799999999976989999957837477805--7747999985766323799688999999999998-5993798862255


Q ss_pred             HHHHHHHHHH-HHHH--------HHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf             5553001245-4111--------10000130245433333333101-000222101110122112112012457777652
Q gi|254780655|r  447 FSDYSRPAIR-LASL--------MGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVA  516 (673)
Q Consensus       447 F~~~~~~~ir-~~al--------~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~a  516 (673)
T Consensus        79 Fl~~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~--~~~~g~~Hs~~~~--a~~~~iPgl~V~~Ps~~~d~~~ll~~a  154 (167)
T cd07036          79 FALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLE--AWFAHIPGLKVVAPSTPYDAKGLLKAA  154 (167)
T ss_pred             HHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCHH--HHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             540059999977567612038940588899960667--7674530036879--998079996899729999999999999


Q ss_pred             HCCCCCCEEEEECC
Q ss_conf             02567834999524
Q gi|254780655|r  517 LKEKNRPSVLSLSR  530 (673)
Q Consensus       517 l~~~~gP~~ir~~R  530 (673)
T Consensus       155 ~~~-~~Pv~~~E~k  167 (167)
T cd07036         155 IRD-DDPVIFLEHK  167 (167)
T ss_pred             HHC-CCCEEEEECC
T ss_conf             839-9978999339