HHsearch alignment for GI: 254780655 and conserved domain: cd07036
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.89 E-value=2.1e-23 Score=188.47 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHH
Q ss_conf 467888998865543322034555674000266634454320-01003257620023567879987288762200-1003
Q gi|254780655|r 369 SSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMV 446 (673)
Q Consensus 369 a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~ 446 (673)
T Consensus 2 Ai~~al~~~~~~d~~v~~~g~dv~~~~g~~--~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl-~G~~Pvv~~~~~~ 78 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVF--KVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAM-NGLRPIVEIMFAD 78 (167)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEHH
T ss_conf 799999999976989999957837477805--7747999985766323799688999999999998-5993798862255
Q ss_pred HHHHHHHHHH-HHHH--------HHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf 5553001245-4111--------10000130245433333333101-000222101110122112112012457777652
Q gi|254780655|r 447 FSDYSRPAIR-LASL--------MGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVA 516 (673)
Q Consensus 447 F~~~~~~~ir-~~al--------~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~a 516 (673)
T Consensus 79 Fl~~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~--~~~~g~~Hs~~~~--a~~~~iPgl~V~~Ps~~~d~~~ll~~a 154 (167)
T cd07036 79 FALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLE--AWFAHIPGLKVVAPSTPYDAKGLLKAA 154 (167)
T ss_pred HHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCHH--HHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 540059999977567612038940588899960667--7674530036879--998079996899729999999999999
Q ss_pred HCCCCCCEEEEECC
Q ss_conf 02567834999524
Q gi|254780655|r 517 LKEKNRPSVLSLSR 530 (673)
Q Consensus 517 l~~~~gP~~ir~~R 530 (673)
T Consensus 155 ~~~-~~Pv~~~E~k 167 (167)
T cd07036 155 IRD-DDPVIFLEHK 167 (167)
T ss_pred HHC-CCCEEEEECC
T ss_conf 839-9978999339