HHsearch alignment for GI: 254780655 and conserved domain: cd07038

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.75  E-value=0.19  Score=29.51  Aligned_cols=110  Identities=22%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCC------CCC
Q ss_conf             620023567879987288762200-10035553001245411110000130245433-3333331010002------221
Q gi|254780655|r  419 VREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVE------HLA  490 (673)
Q Consensus       419 IaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~ie------dia  490 (673)
T Consensus        42 rhE~~A~~mAdgyaR~tg-~gv~~~t~GPG~tN~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
T cd07038          42 CNELNAGYAADGYARVKG-LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK  120 (162)
T ss_pred             CCHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             764889999999998549-6566655787188899999999983898799968877556525763001126521699999


Q ss_pred             HHHHHCC--CCEEEECC-HHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             0111012--21121120-1245777765202567834999524
Q gi|254780655|r  491 ALRAIPD--LLVLRPAD-SIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       491 ~lr~iPn--l~v~~P~d-~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
T Consensus       121 ~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~l~iPr  162 (162)
T cd07038         121 MFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYIEIPR  162 (162)
T ss_pred             HHHHHEEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf             998673288992999999999999999984289-888996388