HHsearch alignment for GI: 254780655 and conserved domain: cd07038
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.75 E-value=0.19 Score=29.51 Aligned_cols=110 Identities=22% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCC------CCC
Q ss_conf 620023567879987288762200-10035553001245411110000130245433-3333331010002------221
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVE------HLA 490 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~ie------dia 490 (673)
T Consensus 42 rhE~~A~~mAdgyaR~tg-~gv~~~t~GPG~tN~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (162)
T cd07038 42 CNELNAGYAADGYARVKG-LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 764889999999998549-6566655787188899999999983898799968877556525763001126521699999
Q ss_pred HHHHHCC--CCEEEECC-HHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 0111012--21121120-1245777765202567834999524
Q gi|254780655|r 491 ALRAIPD--LLVLRPAD-SIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 491 ~lr~iPn--l~v~~P~d-~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
T Consensus 121 ~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~l~iPr 162 (162)
T cd07038 121 MFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYIEIPR 162 (162)
T ss_pred HHHHHEEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf 998673288992999999999999999984289-888996388