HHsearch alignment for GI: 254780655 and conserved domain: pfam01855
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=96.07 E-value=0.018 Score=36.93 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf 620023567879987288762200100355530012454111100001302-4543333333310100022210111012
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHLAALRAIPD 497 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedia~lr~iPn 497 (673)
T Consensus 43 e~E~~A~~~~~GAs~-aGara~taTs~~Gl~lm~e~l~~aag~~~P~V~~v~~R~~~~~g--l~~~~eq~D~~~~rd~-g 118 (230)
T pfam01855 43 ESEIGAISAVIGAAA-AGARAMTATSGQGLLLMIENLGKAAGEELPIVIHVVARAGPSPG--LSIFGDQGDLMAARDT-G 118 (230)
T ss_pred CCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHC-C
T ss_conf 887999999999998-48620440267527675678889987368859999966789987--7666513789999856-9
Q ss_pred CCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf 2112112012457777652025---678349995
Q gi|254780655|r 498 LLVLRPADSIETLECWQVALKE---KNRPSVLSL 528 (673)
Q Consensus 498 l~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~ 528 (673)
T Consensus 119 ~~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~ 152 (230)
T pfam01855 119 WIVLAPENVQEAFDLALVAFNLAEKVRTPVIHLF 152 (230)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 0899469999999999999999999889989982