HHsearch alignment for GI: 254780655 and conserved domain: smart00861
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=7.3e-31 Score=242.45 Aligned_cols=165 Identities=35% Similarity=0.522 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 10134678889988655-43322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r 365 ATRKSSELVLEVVNDCL-PELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT 443 (673)
Q Consensus 365 atr~a~g~~l~~i~~~~-p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t 443 (673)
T Consensus 1 ~~r~a~~~~l~~l~~~~~~~iv~~~~Dl~~~~~~~~~~~f~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~-G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALA-GLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHC-CCCCCCCH
T ss_conf 91899999999998569971999836748875775366104444569987564483789999987599875-99642102
Q ss_pred CHHHHHHHHHHHHHHHHHH-CCCEEECCC-CCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 0035553001245411110-000130245-43333333310100022210111012211211201245777765202567
Q gi|254780655|r 444 FMVFSDYSRPAIRLASLMG-IRVIHVLTH-DSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKN 521 (673)
Q Consensus 444 f~~F~~~~~~~ir~~al~~-~~v~~v~th-~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~ 521 (673)
T Consensus 80 ~~~f~~~a~~qi~~~~~~~~~~~--v~~~~~~~~~g~~G~tH~s~~~~~~~~~ip~~~v~~P~~~~e~~~~l~~a~~~~~ 157 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPV--VVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDD 157 (168)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCE--EEEEECEEEECCCCCHHCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 35788758999986534066773--7886010056688641104443888861799789970999999999999984889
Q ss_pred CCEEEEECCCC
Q ss_conf 83499952444
Q gi|254780655|r 522 RPSVLSLSRQN 532 (673)
Q Consensus 522 gP~~ir~~R~~ 532 (673)
T Consensus 158 ~p~~i~l~~~~ 168 (168)
T smart00861 158 GPPVIRLERKS 168 (168)
T ss_pred CCEEEEECCCC
T ss_conf 98899973899