Query gi|254780657|ref|YP_003065070.1| hypothetical protein CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 61 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 14:46:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780657.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2o8p_A 14-3-3 domain containi 22.9 27 0.00081 16.9 0.6 14 17-30 47-60 (113) 2 >2j01_N 50S ribosomal protein 20.3 25 0.00073 17.2 -0.0 13 34-46 15-27 (29) 3 >3efz_A 14-3-3 protein; 14-3-3 16.4 46 0.0014 15.7 0.6 13 17-29 63-75 (133) 4 >2c1n_A 14-3-3 protein zeta/de 15.8 51 0.0015 15.5 0.7 16 17-32 53-68 (120) 5 >2o02_A 14-3-3 protein zeta/de 15.4 53 0.0016 15.4 0.7 17 17-33 40-56 (107) 6 >1o9d_A 14-3-3-like protein C; 13.4 62 0.0018 15.0 0.6 14 17-30 47-60 (116) 7 >2br9_A 14-3-3E, 14-3-3 protei 13.1 64 0.0019 15.0 0.6 14 17-30 42-55 (111) 8 >1ukf_A Avirulence protein AVR 12.7 48 0.0014 15.6 -0.1 40 14-53 107-146 (188) 9 >1dxs_A P53-like transcription 12.6 68 0.002 14.8 0.6 26 18-45 28-53 (80) 10 >1rg6_A Second splice variant 12.0 74 0.0022 14.6 0.7 26 17-44 28-53 (75) No 1 >>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, structural genomics, structural genomics consortium; HET: MSE; 1.82A {Cryptosporidium parvum} (A:1-113) Probab=22.92 E-value=27 Score=16.94 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=11.1 Q ss_pred HHHHCCHHHHHHHH Q ss_conf 87522678775431 Q gi|254780657|r 17 ARNLLSPAYRHMKS 30 (61) Q Consensus 17 arnllspayrhmks 30 (61) -|||||-||.+.-+ T Consensus 47 ERnLLSvAYKNvvg 60 (113) T 2o8p_A 47 ERHLLTLCIKHKIS 60 (113) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999988764 No 2 >>2j01_N 50S ribosomal protein L13; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (N:64-92) Probab=20.28 E-value=25 Score=17.16 Aligned_cols=13 Identities=62% Similarity=0.654 Sum_probs=9.4 Q ss_pred HHHCCCCCCCCCC Q ss_conf 5404222755113 Q gi|254780657|r 34 ADLGAKKIPLEKK 46 (61) Q Consensus 34 adlgakkiplekk 46 (61) -.-|-|+||+||- T Consensus 15 y~gglk~ip~ekm 27 (29) T 2j01_N 15 YPGGLKKIPLEKM 27 (29) T ss_dssp SSSCCCCCBHHHH T ss_pred CCCCCCCCCHHHH T ss_conf 5676555557776 No 3 >>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} (A:1-133) Probab=16.38 E-value=46 Score=15.71 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=10.2 Q ss_pred HHHHCCHHHHHHH Q ss_conf 8752267877543 Q gi|254780657|r 17 ARNLLSPAYRHMK 29 (61) Q Consensus 17 arnllspayrhmk 29 (61) .|||||-||...- T Consensus 63 ERNLLSVAYKNvI 75 (133) T 3efz_A 63 LILLLAGSLRNRV 75 (133) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999986653 No 4 >>2c1n_A 14-3-3 protein zeta/delta; signaling protein/complex, phosphorylation, 14-3-3, acetylation, nucleosome, signaling protein; HET: SEP; 2.0A {Homo sapiens} (A:1-120) Probab=15.75 E-value=51 Score=15.47 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=12.4 Q ss_pred HHHHCCHHHHHHHHCC Q ss_conf 8752267877543101 Q gi|254780657|r 17 ARNLLSPAYRHMKSIS 32 (61) Q Consensus 17 arnllspayrhmksis 32 (61) .|||||-||.++-+.. T Consensus 53 ERnLLSvaYKn~ig~r 68 (120) T 2c1n_A 53 ERNLLSVAYKNVVGAR 68 (120) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999746079 No 5 >>2o02_A 14-3-3 protein zeta/delta; 14-3-3, adapter protein, pathogen, protein binding/toxin complex; 1.50A {Homo sapiens} (A:1-107) Probab=15.45 E-value=53 Score=15.40 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=12.5 Q ss_pred HHHHCCHHHHHHHHCCH Q ss_conf 87522678775431015 Q gi|254780657|r 17 ARNLLSPAYRHMKSISL 33 (61) Q Consensus 17 arnllspayrhmksisl 33 (61) -|||||-||.++-+..- T Consensus 40 ERnLlsvayKn~i~~~R 56 (107) T 2o02_A 40 ERNLLSVAYKNVVGARR 56 (107) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999987551499 No 6 >>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} (A:1-116) Probab=13.44 E-value=62 Score=15.04 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=10.1 Q ss_pred HHHHCCHHHHHHHH Q ss_conf 87522678775431 Q gi|254780657|r 17 ARNLLSPAYRHMKS 30 (61) Q Consensus 17 arnllspayrhmks 30 (61) .|||||-||.++-+ T Consensus 47 ERnLLSvaYKn~i~ 60 (116) T 1o9d_A 47 ERNLLSVAYKNVIG 60 (116) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999988644 No 7 >>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural genomics consortium, SGC; HET: SEP; 1.75A {Homo sapiens} PDB: 2o98_A* (A:1-111) Probab=13.12 E-value=64 Score=14.96 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=10.1 Q ss_pred HHHHCCHHHHHHHH Q ss_conf 87522678775431 Q gi|254780657|r 17 ARNLLSPAYRHMKS 30 (61) Q Consensus 17 arnllspayrhmks 30 (61) .|||||-||.++-+ T Consensus 42 ERnLLSvayKn~ig 55 (111) T 2br9_A 42 ERNLLSVAYKNVIG 55 (111) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999887 No 8 >>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} (A:) Probab=12.67 E-value=48 Score=15.62 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=28.8 Q ss_pred HHHHHHHCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCEEE Q ss_conf 8888752267877543101554042227551139631388 Q gi|254780657|r 14 KMIARNLLSPAYRHMKSISLADLGAKKIPLEKKKPKSQLF 53 (61) Q Consensus 14 kmiarnllspayrhmksisladlgakkiplekkkpksqlf 53 (61) +-+++-++.+.+.|.++|++++-||.-|-.-...-+--+| T Consensus 107 ~~~~~aI~~~g~~~l~~i~f~~~~aHava~~~~~~~vtfF 146 (188) T 1ukf_A 107 QTVAHDVAQSGRKHLLSLRFANVQGHAIACSCEGSQFKLF 146 (188) T ss_dssp HHHHHHHCSTTCEEEEEEEETTTEEEEEEEEEETTEEEEE T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCEEEEE T ss_conf 8899987457987279999238984279998669907998 No 9 >>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} (A:) Probab=12.62 E-value=68 Score=14.83 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=18.6 Q ss_pred HHHCCHHHHHHHHCCHHHHCCCCCCCCC Q ss_conf 7522678775431015540422275511 Q gi|254780657|r 18 RNLLSPAYRHMKSISLADLGAKKIPLEK 45 (61) Q Consensus 18 rnllspayrhmksisladlgakkiplek 45 (61) +||.| --|...+++.||++-|||-.- T Consensus 28 qgl~s--i~qL~~~tlEDL~~mkIp~q~ 53 (80) T 1dxs_A 28 QGLQS--IYHLQNLTIEDLGALKIPEQY 53 (80) T ss_dssp TTCCC--HHHHHTCCHHHHHHTTCCTTT T ss_pred CCCHH--HHHHHHCCHHHHHCCCCCHHH T ss_conf 25205--998851689888717773888 No 10 >>1rg6_A Second splice variant P63; P73 SAM-like domain, gene regulation; NMR {Homo sapiens} (A:) Probab=11.97 E-value=74 Score=14.62 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.9 Q ss_pred HHHHCCHHHHHHHHCCHHHHCCCCCCCC Q ss_conf 8752267877543101554042227551 Q gi|254780657|r 17 ARNLLSPAYRHMKSISLADLGAKKIPLE 44 (61) Q Consensus 17 arnllspayrhmksisladlgakkiple 44 (61) .++|.| --|...+++.||++-|||-. T Consensus 28 ~qgl~s--i~qL~~~tlEDL~~mkIp~q 53 (75) T 1rg6_A 28 TQGLTT--IYQIEHYSMDDLASLKIPEQ 53 (75) T ss_dssp HHTCCS--GGGGSSCCHHHHHTTTCCTH T ss_pred HCCCHH--HHHHHHCCHHHHHCCCCCHH T ss_conf 825215--99885168988862777377 Done!