RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780657|ref|YP_003065070.1| hypothetical protein
CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>gnl|CDD|180110 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase;
          Provisional.
          Length = 425

 Score = 25.5 bits (57), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 27 HMKSISLADLGAKKI 41
           +  ISLAD G K+I
Sbjct: 9  KVADISLADWGRKEI 23


>gnl|CDD|162988 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase. 
          This enzyme, 5,10-methenyltetrahydrofolate synthetase,
          is also called 5-formyltetrahydrofolate cycloligase.
          Function of bacterial proteins in this family was
          inferred originally from the known activity of
          eukaryotic homologs. Recently, activity was shown
          explicitly for the member from Mycoplasma pneumonia.
          Members of this family from alpha- and
          gamma-proteobacteria, designated ygfA, are often found
          in an operon with 6S structural RNA, and show a similar
          pattern of high expression during stationary phase. The
          function may be to deplete folate to slow 1-carbon
          biosynthetic metabolism.
          Length = 181

 Score = 24.5 bits (54), Expect = 6.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 7  KNLIRKKKMIARNLLSPAYRHMKS 30
          K  +RKK +  R  LS   R   S
Sbjct: 1  KKELRKKLLERRKALSSEERKAAS 24


>gnl|CDD|183057 PRK11249, katE, hydroperoxidase II; Provisional.
          Length = 752

 Score = 24.2 bits (53), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 17  ARNLLSPAYRHMKSISLA 34
           AR  L  AY+H+K I+LA
Sbjct: 680 ARYYLLEAYKHLKPIALA 697


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 943,850
Number of extensions: 42660
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 6
Length of query: 61
Length of database: 5,994,473
Length adjustment: 33
Effective length of query: 28
Effective length of database: 5,281,409
Effective search space: 147879452
Effective search space used: 147879452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)