RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780657|ref|YP_003065070.1| hypothetical protein CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62] (61 letters) >gnl|CDD|180110 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional. Length = 425 Score = 25.5 bits (57), Expect = 3.1 Identities = 8/15 (53%), Positives = 10/15 (66%) Query: 27 HMKSISLADLGAKKI 41 + ISLAD G K+I Sbjct: 9 KVADISLADWGRKEI 23 >gnl|CDD|162988 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. Length = 181 Score = 24.5 bits (54), Expect = 6.4 Identities = 9/24 (37%), Positives = 11/24 (45%) Query: 7 KNLIRKKKMIARNLLSPAYRHMKS 30 K +RKK + R LS R S Sbjct: 1 KKELRKKLLERRKALSSEERKAAS 24 >gnl|CDD|183057 PRK11249, katE, hydroperoxidase II; Provisional. Length = 752 Score = 24.2 bits (53), Expect = 8.2 Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 17 ARNLLSPAYRHMKSISLA 34 AR L AY+H+K I+LA Sbjct: 680 ARYYLLEAYKHLKPIALA 697 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.132 0.370 Gapped Lambda K H 0.267 0.0749 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 943,850 Number of extensions: 42660 Number of successful extensions: 72 Number of sequences better than 10.0: 1 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 6 Length of query: 61 Length of database: 5,994,473 Length adjustment: 33 Effective length of query: 28 Effective length of database: 5,281,409 Effective search space: 147879452 Effective search space used: 147879452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.0 bits)