RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780657|ref|YP_003065070.1| hypothetical protein
CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.3 bits (68), Expect = 0.11
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 37/77 (48%)

Query: 7   KNLIRKK--KMIAR-N--LLSPAYRHMKSISL---------------------------- 33
            NL +++    + + N  L  PA + +  ISL                            
Sbjct: 342 SNLTQEQVQDYVNKTNSHL--PAGKQV-EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398

Query: 34  -ADLGAKKIPLEKKKPK 49
            + L   +IP  ++K K
Sbjct: 399 PSGLDQSRIPFSERKLK 415


>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family protein; 10-
          methenyltetrahydrofolate synthetase, MTHFS, folate
          metabolism, structural genomics; HET: ADP; 1.6A
          {Bacillus anthracis}
          Length = 200

 Score = 26.4 bits (57), Expect = 1.7
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 4  REHKNLIRKKKMIARNLLSPAYRHMKSISLADLGAKKIPLEKKK 47
          RE K  +RK+ +   N LS       S  +     ++    + K
Sbjct: 10 REEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAK 53


>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of
          dimers, NAD binding domain, 37 amino acid insertional
          region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis
          H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
          Length = 494

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 5/32 (15%)

Query: 15 MIARNLLSPAYRH-----MKSISLADLGAKKI 41
          ++ +N L+P  R+     +  +SLAD G K++
Sbjct: 4  LVTKNSLTPDVRNGIDFKIADLSLADFGRKEL 35


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 489,808
Number of extensions: 17521
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 9
Length of query: 61
Length of database: 5,693,230
Length adjustment: 32
Effective length of query: 29
Effective length of database: 4,917,422
Effective search space: 142605238
Effective search space used: 142605238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)